ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 2128 |
| Acc65I | GGTACC | 1 cut(s) | 817 |
| AccB1I | GGYRCC | 3 cut(s) | 817, 1307, 1474 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1131 |
| AccBSI | CCGCTC | 1 cut(s) | 2323 |
| AccI | GTMKAC | 2 cut(s) | 748, 1317 |
| AccII | CGCG | 6 cut(s) | 592, 1034, 1209, 1788, 2356, 2452 |
| AccIII | TCCGGA | 2 cut(s) | 67, 598 |
| AclWI | GGATC | 2 cut(s) | 36, 1953 |
| AcoI | YGGCCR | 4 cut(s) | 1554, 1675, 1935, 2398 |
| AcsI | RAATTY | 5 cut(s) | 85, 145, 256, 674, 1502 |
| AcuI | CTGAAG | 2 cut(s) | 1103, 2368 |
| AcvI | CACGTG | 1 cut(s) | 626 |
| AcyI | GRCGYC | 1 cut(s) | 2438 |
| AfaI | GTAC | 6 cut(s) | 5, 130, 595, 630, 819, 1634 |
| AfeI | AGCGCT | 2 cut(s) | 1217, 1960 |
| AflII | CTTAAG | 1 cut(s) | 251 |
| AflIII | ACRYGT | 2 cut(s) | 623, 625 |
| AgsI | TTSAA | 5 cut(s) | 20, 59, 83, 151, 680 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1720 |
| AjnI | CCWGG | 2 cut(s) | 820, 1491 |
| AleI | CACNNNNGTG | 2 cut(s) | 788, 2001 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2285, 2317 |
| Alw21I | GWGCWC | 4 cut(s) | 705, 785, 1172, 2469 |
| Alw44I | GTGCAC | 1 cut(s) | 781 |
| AlwI | GGATC | 2 cut(s) | 36, 1953 |
| Aor13HI | TCCGGA | 2 cut(s) | 67, 598 |
| Aor51HI | AGCGCT | 2 cut(s) | 1217, 1960 |
| ApaI | GGGCCC | 1 cut(s) | 2176 |
| ApaLI | GTGCAC | 1 cut(s) | 781 |
| ApeKI | GCWGC | 7 cut(s) | 1190, 1193, 1235, 1375, 1650, 1961, 2446 |
| ApoI | RAATTY | 5 cut(s) | 85, 145, 256, 674, 1502 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1611 |
| Asp718I | GGTACC | 1 cut(s) | 817 |
| AsuC2I | CCSGG | 4 cut(s) | 1012, 1362, 1770, 1942 |
| AsuHPI | GGTGA | 7 cut(s) | 286, 768, 1193, 1381, 1891, 2083, 2258 |
| AsuII | TTCGAA | 1 cut(s) | 1797 |
| AsuNHI | GCTAGC | 1 cut(s) | 1238 |
| AvaII | GGWCC | 4 cut(s) | 225, 1737, 1810, 2006 |
| BaeGI | GKGCMC | 2 cut(s) | 785, 2176 |
| BalI | TGGCCA | 2 cut(s) | 1556, 2400 |
| BanI | GGYRCC | 3 cut(s) | 817, 1307, 1474 |
| BanII | GRGCYC | 5 cut(s) | 705, 1172, 1367, 2176, 2469 |
| BauI | CACGAG | 1 cut(s) | 1436 |
| BbrPI | CACGTG | 1 cut(s) | 626 |
| BbsI | GAAGAC | 2 cut(s) | 688, 2216 |
| Bbv12I | GWGCWC | 4 cut(s) | 705, 785, 1172, 2469 |
| BbvI | GCAGC | 7 cut(s) | 1177, 1180, 1222, 1362, 1637, 1948, 2458 |
| BccI | CCATC | 5 cut(s) | 967, 1133, 1298, 1801, 2319 |
| BceAI | ACGGC | 9 cut(s) | 647, 1298, 1404, 1415, 1950, 2139, 2163, 2225, 2379 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1297, 1331 |
| BciT130I | CCWGG | 2 cut(s) | 822, 1493 |
| BclI | TGATCA | 3 cut(s) | 106, 187, 1698 |
| BcnI | CCSGG | 4 cut(s) | 1012, 1362, 1770, 1942 |
| BfaI | CTAG | 6 cut(s) | 686, 1173, 1203, 1239, 2342, 2491 |
| BfmI | CTRYAG | 2 cut(s) | 562, 1752 |
| BfoI | RGCGCY | 6 cut(s) | 1219, 1645, 1691, 1962, 2105, 2237 |
| BfrI | CTTAAG | 1 cut(s) | 251 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2198 |
| BlpI | GCTNAGC | 3 cut(s) | 328, 402, 483 |
| BmcAI | AGTACT | 1 cut(s) | 130 |
| Bme1390I | CCNGG | 6 cut(s) | 822, 1012, 1362, 1493, 1770, 1942 |
| Bme18I | GGWCC | 4 cut(s) | 225, 1737, 1810, 2006 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1720 |
| BmrFI | CCNGG | 6 cut(s) | 822, 1012, 1362, 1493, 1770, 1942 |
| BmsI | GCATC | 2 cut(s) | 1398, 1977 |
| BmtI | GCTAGC | 1 cut(s) | 1242 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2078 |
| BpiI | GAAGAC | 2 cut(s) | 688, 2216 |
| BplI | GAGNNNNNCTC | 8 cut(s) | 1388, 1420, 1449, 1481, 2240, 2272, 2289, 2321 |
| BpmI | CTGGAG | 2 cut(s) | 322, 2126 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2468 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 328, 402, 483 |
| Bpu14I | TTCGAA | 1 cut(s) | 1797 |
| BpuEI | CTTGAG | 4 cut(s) | 145, 191, 523, 1690 |
| BpuMI | CCSGG | 4 cut(s) | 1012, 1362, 1770, 1942 |
| Bsa29I | ATCGAT | 1 cut(s) | 769 |
| BsaAI | YACGTR | 3 cut(s) | 557, 626, 1636 |
| BsaHI | GRCGYC | 1 cut(s) | 2438 |
| BsaI | GGTCTC | 1 cut(s) | 710 |
| BsaJI | CCNNGG | 8 cut(s) | 577, 648, 1645, 1851, 1911, 1941, 2049, 2450 |
| BsaWI | WCCGGW | 5 cut(s) | 67, 598, 1335, 1353, 1812 |
| Bse118I | RCCGGY | 2 cut(s) | 1677, 2026 |
| Bse1I | ACTGG | 5 cut(s) | 305, 372, 1733, 1906, 2063 |
| BseAI | TCCGGA | 2 cut(s) | 67, 598 |
| BseBI | CCWGG | 2 cut(s) | 822, 1493 |
| BseCI | ATCGAT | 1 cut(s) | 769 |
| BseDI | CCNNGG | 8 cut(s) | 577, 648, 1645, 1851, 1911, 1941, 2049, 2450 |
| BseGI | GGATG | 6 cut(s) | 190, 978, 1125, 1344, 1399, 1992 |
| BseMII | CTCAG | 9 cut(s) | 342, 416, 497, 800, 882, 914, 1943, 2118, 2482 |
| BseNI | ACTGG | 5 cut(s) | 305, 372, 1733, 1906, 2063 |
| BseRI | GAGGAG | 2 cut(s) | 1412, 2069 |
| BseSI | GKGCMC | 2 cut(s) | 785, 2176 |
| BseX3I | CGGCCG | 1 cut(s) | 1935 |
| BseXI | GCAGC | 7 cut(s) | 1177, 1180, 1222, 1362, 1637, 1948, 2458 |
| BseYI | CCCAGC | 5 cut(s) | 634, 911, 1414, 1866, 2087 |
| Bsh1236I | CGCG | 6 cut(s) | 592, 1034, 1209, 1788, 2356, 2452 |
| Bsh1285I | CGRYCG | 3 cut(s) | 773, 789, 1938 |
| BshNI | GGYRCC | 3 cut(s) | 817, 1307, 1474 |
| BshVI | ATCGAT | 1 cut(s) | 769 |
| BsiEI | CGRYCG | 3 cut(s) | 773, 789, 1938 |
| BsiHKAI | GWGCWC | 4 cut(s) | 705, 785, 1172, 2469 |
| BslFI | GGGAC | 5 cut(s) | 211, 535, 1727, 1750, 1939 |
| BsmBI | CGTCTC | 4 cut(s) | 348, 422, 1883, 2145 |
| BsmFI | GGGAC | 5 cut(s) | 211, 535, 1727, 1750, 1939 |
| BsmI | GAATGC | 2 cut(s) | 1282, 1793 |
| Bso31I | GGTCTC | 1 cut(s) | 710 |
| Bsp119I | TTCGAA | 1 cut(s) | 1797 |
| Bsp120I | GGGCCC | 1 cut(s) | 2172 |
| Bsp1286I | GDGCHC | 6 cut(s) | 705, 785, 1172, 1367, 2176, 2469 |
| Bsp13I | TCCGGA | 2 cut(s) | 67, 598 |
| Bsp1407I | TGTACA | 1 cut(s) | 3 |
| Bsp143I | GATC | 7 cut(s) | 12, 28, 106, 187, 770, 1698, 1945 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 328, 402, 483 |
| Bsp68I | TCGCGA | 1 cut(s) | 1788 |
| BspCNI | CTCAG | 9 cut(s) | 341, 415, 496, 801, 883, 915, 1942, 2119, 2481 |
| BspDI | ATCGAT | 1 cut(s) | 769 |
| BspEI | TCCGGA | 2 cut(s) | 67, 598 |
| BspFNI | CGCG | 6 cut(s) | 592, 1034, 1209, 1788, 2356, 2452 |
| BspOI | GCTAGC | 1 cut(s) | 1242 |
| BspPI | GGATC | 2 cut(s) | 36, 1953 |
| BspQI | GCTCTTC | 1 cut(s) | 2457 |
| BspT104I | TTCGAA | 1 cut(s) | 1797 |
| BspT107I | GGYRCC | 3 cut(s) | 817, 1307, 1474 |
| BspTI | CTTAAG | 1 cut(s) | 251 |
| BspTNI | GGTCTC | 1 cut(s) | 710 |
| BsrBI | CCGCTC | 1 cut(s) | 2323 |
| BsrFI | RCCGGY | 2 cut(s) | 1677, 2026 |
| BsrGI | TGTACA | 1 cut(s) | 3 |
| BsrI | ACTGG | 5 cut(s) | 305, 372, 1733, 1906, 2063 |
| BssAI | RCCGGY | 2 cut(s) | 1677, 2026 |
| BssECI | CCNNGG | 8 cut(s) | 577, 648, 1645, 1851, 1911, 1941, 2049, 2450 |
| BssMI | GATC | 7 cut(s) | 12, 28, 106, 187, 770, 1698, 1945 |
| BssNAI | GTATAC | 1 cut(s) | 749 |
| BssNI | GRCGYC | 1 cut(s) | 2438 |
| BssSI | CACGAG | 1 cut(s) | 1436 |
| BssT1I | CCWWGG | 2 cut(s) | 648, 2049 |
| Bst1107I | GTATAC | 1 cut(s) | 749 |
| Bst2BI | CACGAG | 1 cut(s) | 1436 |
| Bst2UI | CCWGG | 2 cut(s) | 822, 1493 |
| Bst6I | CTCTTC | 4 cut(s) | 1251, 2139, 2312, 2457 |
| BstACI | GRCGYC | 1 cut(s) | 2438 |
| BstAFI | CTTAAG | 1 cut(s) | 251 |
| BstAUI | TGTACA | 1 cut(s) | 3 |
| BstBAI | YACGTR | 3 cut(s) | 557, 626, 1636 |
| BstBI | TTCGAA | 1 cut(s) | 1797 |
| BstDSI | CCRYGG | 1 cut(s) | 2450 |
| BstF5I | GGATG | 6 cut(s) | 190, 978, 1125, 1344, 1399, 1992 |
| BstFNI | CGCG | 6 cut(s) | 592, 1034, 1209, 1788, 2356, 2452 |
| BstH2I | RGCGCY | 6 cut(s) | 1219, 1645, 1691, 1962, 2105, 2237 |
| BstKTI | GATC | 7 cut(s) | 15, 31, 109, 190, 773, 1701, 1948 |
| BstMBI | GATC | 7 cut(s) | 12, 28, 106, 187, 770, 1698, 1945 |
| BstMCI | CGRYCG | 3 cut(s) | 773, 789, 1938 |
| BstNI | CCWGG | 2 cut(s) | 822, 1493 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2078 |
| BstSCI | CCNGG | 6 cut(s) | 820, 1010, 1360, 1491, 1768, 1940 |
| BstSFI | CTRYAG | 2 cut(s) | 562, 1752 |
| BstSLI | GKGCMC | 2 cut(s) | 785, 2176 |
| BstSNI | TACGTA | 1 cut(s) | 557 |
| BstUI | CGCG | 6 cut(s) | 592, 1034, 1209, 1788, 2356, 2452 |
| BstV1I | GCAGC | 7 cut(s) | 1177, 1180, 1222, 1362, 1637, 1948, 2458 |
| BstV2I | GAAGAC | 2 cut(s) | 688, 2216 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2003 |
| BstZ17I | GTATAC | 1 cut(s) | 749 |
| BstZI | CGGCCG | 1 cut(s) | 1935 |
| Bsu15I | ATCGAT | 1 cut(s) | 769 |
| BsuTUI | ATCGAT | 1 cut(s) | 769 |
| BtgI | CCRYGG | 1 cut(s) | 2450 |
| BtgZI | GCGATG | 1 cut(s) | 1820 |
| BtsCI | GGATG | 6 cut(s) | 190, 978, 1125, 1344, 1399, 1992 |
| BtsI | GCAGTG | 2 cut(s) | 1006, 1088 |
| BtsIMutI | CAGTG | 6 cut(s) | 6, 365, 806, 1006, 1088, 2070 |
| BtuMI | TCGCGA | 1 cut(s) | 1788 |
| Cfr10I | RCCGGY | 2 cut(s) | 1677, 2026 |
| Cfr42I | CCGCGG | 1 cut(s) | 2453 |
| ClaI | ATCGAT | 1 cut(s) | 769 |
| CseI | GACGC | 4 cut(s) | 1052, 1735, 1799, 2427 |
| Csp6I | GTAC | 6 cut(s) | 4, 129, 594, 629, 818, 1633 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 795, 830 |
| CviAII | CATG | 5 cut(s) | 110, 1076, 1558, 1843, 2420 |
| CviQI | GTAC | 6 cut(s) | 4, 129, 594, 629, 818, 1633 |
| DpnI | GATC | 7 cut(s) | 14, 30, 108, 189, 772, 1700, 1947 |
| DpnII | GATC | 7 cut(s) | 12, 28, 106, 187, 770, 1698, 1945 |
| DraI | TTTAAA | 1 cut(s) | 166 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2128 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1720 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2128 |
| EaeI | YGGCCR | 4 cut(s) | 1554, 1675, 1935, 2398 |
| EagI | CGGCCG | 1 cut(s) | 1935 |
| Eam1104I | CTCTTC | 4 cut(s) | 1251, 2139, 2312, 2457 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1720 |
| EarI | CTCTTC | 4 cut(s) | 1251, 2139, 2312, 2457 |
| EciI | GGCGGA | 5 cut(s) | 548, 1406, 1439, 1619, 2045 |
| Ecl136II | GAGCTC | 3 cut(s) | 703, 1170, 2467 |
| EclXI | CGGCCG | 1 cut(s) | 1935 |
| Eco105I | TACGTA | 1 cut(s) | 557 |
| Eco130I | CCWWGG | 2 cut(s) | 648, 2049 |
| Eco147I | AGGCCT | 1 cut(s) | 1403 |
| Eco24I | GRGCYC | 5 cut(s) | 705, 1172, 1367, 2176, 2469 |
| Eco31I | GGTCTC | 1 cut(s) | 710 |
| Eco47I | GGWCC | 4 cut(s) | 225, 1737, 1810, 2006 |
| Eco47III | AGCGCT | 2 cut(s) | 1217, 1960 |
| Eco52I | CGGCCG | 1 cut(s) | 1935 |
| Eco53kI | GAGCTC | 3 cut(s) | 703, 1170, 2467 |
| Eco57I | CTGAAG | 2 cut(s) | 1103, 2368 |
| Eco72I | CACGTG | 1 cut(s) | 626 |
| EcoICRI | GAGCTC | 3 cut(s) | 703, 1170, 2467 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1592, 1737, 2172 |
| EcoRII | CCWGG | 2 cut(s) | 820, 1491 |
| EcoT14I | CCWWGG | 2 cut(s) | 648, 2049 |
| EcoT38I | GRGCYC | 5 cut(s) | 705, 1172, 1367, 2176, 2469 |
| ErhI | CCWWGG | 2 cut(s) | 648, 2049 |
| Esp3I | CGTCTC | 4 cut(s) | 348, 422, 1883, 2145 |
| FaeI | CATG | 5 cut(s) | 113, 1079, 1561, 1846, 2423 |
| FaqI | GGGAC | 5 cut(s) | 211, 535, 1727, 1750, 1939 |
| FatI | CATG | 5 cut(s) | 109, 1075, 1557, 1842, 2419 |
| FbaI | TGATCA | 3 cut(s) | 106, 187, 1698 |
| FblI | GTMKAC | 2 cut(s) | 748, 1317 |
| FokI | GGATG | 6 cut(s) | 177, 985, 1112, 1351, 1406, 1999 |
| FriOI | GRGCYC | 5 cut(s) | 705, 1172, 1367, 2176, 2469 |
| FspBI | CTAG | 6 cut(s) | 686, 1173, 1203, 1239, 2342, 2491 |
| GsaI | CCCAGC | 5 cut(s) | 638, 915, 1418, 1870, 2091 |
| GsuI | CTGGAG | 2 cut(s) | 322, 2126 |
| HaeII | RGCGCY | 6 cut(s) | 1219, 1645, 1691, 1962, 2105, 2237 |
| HgaI | GACGC | 4 cut(s) | 1052, 1735, 1799, 2427 |
| Hin1I | GRCGYC | 1 cut(s) | 2438 |
| Hin1II | CATG | 5 cut(s) | 113, 1079, 1561, 1846, 2423 |
| HincII | GTYRAC | 2 cut(s) | 1318, 1333 |
| HindII | GTYRAC | 2 cut(s) | 1318, 1333 |
| HindIII | AAGCTT | 1 cut(s) | 739 |
| HpaI | GTTAAC | 1 cut(s) | 1333 |
| HphI | GGTGA | 7 cut(s) | 286, 768, 1193, 1381, 1891, 2083, 2258 |
| Hpy188III | TCNNGA | 8 cut(s) | 68, 124, 599, 1163, 1436, 1702, 1787, 2135 |
| HpyAV | CCTTC | 6 cut(s) | 57, 1750, 1972, 2182, 2282, 2392 |
| HpyCH4IV | ACGT | 5 cut(s) | 556, 625, 981, 1635, 1892 |
| HpyCH4V | TGCA | 7 cut(s) | 783, 803, 1079, 1486, 1653, 2023, 2273 |
| HpySE526I | ACGT | 5 cut(s) | 556, 625, 981, 1635, 1892 |
| Hsp92I | GRCGYC | 1 cut(s) | 2438 |
| Hsp92II | CATG | 5 cut(s) | 113, 1079, 1561, 1846, 2423 |
| Kpn2I | TCCGGA | 2 cut(s) | 67, 598 |
| KpnI | GGTACC | 1 cut(s) | 821 |
| KroI | GCCGGC | 1 cut(s) | 1677 |
| KroNI | GCCGGC | 1 cut(s) | 1679 |
| Ksp22I | TGATCA | 3 cut(s) | 106, 187, 1698 |
| KspAI | GTTAAC | 1 cut(s) | 1333 |
| KspI | CCGCGG | 1 cut(s) | 2453 |
| Kzo9I | GATC | 7 cut(s) | 12, 28, 106, 187, 770, 1698, 1945 |
| LguI | GCTCTTC | 1 cut(s) | 2457 |
| LmnI | GCTCC | 7 cut(s) | 708, 1250, 1416, 1685, 2056, 2206, 2293 |
| Lsp1109I | GCAGC | 7 cut(s) | 1177, 1180, 1222, 1362, 1637, 1948, 2458 |
| LweI | GCATC | 2 cut(s) | 1398, 1977 |
| MaeI | CTAG | 6 cut(s) | 686, 1173, 1203, 1239, 2342, 2491 |
| MaeII | ACGT | 5 cut(s) | 556, 625, 981, 1635, 1892 |
| MalI | GATC | 7 cut(s) | 14, 30, 108, 189, 772, 1700, 1947 |
| MbiI | CCGCTC | 1 cut(s) | 2323 |
| MboI | GATC | 7 cut(s) | 12, 28, 106, 187, 770, 1698, 1945 |
| MfeI | CAATTG | 2 cut(s) | 93, 2367 |
| MhlI | GDGCHC | 6 cut(s) | 705, 785, 1172, 1367, 2176, 2469 |
| MlsI | TGGCCA | 2 cut(s) | 1556, 2400 |
| MluCI | AATT | 8 cut(s) | 85, 93, 145, 256, 674, 1502, 1828, 2367 |
| MluNI | TGGCCA | 2 cut(s) | 1556, 2400 |
| MlyI | GAGTC | 5 cut(s) | 1709, 1792, 1921, 2101, 2138 |
| MmeI | TCCRAC | 2 cut(s) | 6, 936 |
| Mox20I | TGGCCA | 2 cut(s) | 1556, 2400 |
| MroI | TCCGGA | 2 cut(s) | 67, 598 |
| MroNI | GCCGGC | 1 cut(s) | 1677 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1611 |
| MscI | TGGCCA | 2 cut(s) | 1556, 2400 |
| MseI | TTAA | 3 cut(s) | 165, 252, 1332 |
| MslI | CAYNNNNRTG | 3 cut(s) | 788, 1620, 2001 |
| Msp20I | TGGCCA | 2 cut(s) | 1556, 2400 |
| MspCI | CTTAAG | 1 cut(s) | 251 |
| MspR9I | CCNGG | 6 cut(s) | 822, 1012, 1362, 1493, 1770, 1942 |
| MunI | CAATTG | 2 cut(s) | 93, 2367 |
| Mva1269I | GAATGC | 2 cut(s) | 1282, 1793 |
| MvaI | CCWGG | 2 cut(s) | 822, 1493 |
| MvnI | CGCG | 6 cut(s) | 592, 1034, 1209, 1788, 2356, 2452 |
| NaeI | GCCGGC | 1 cut(s) | 1679 |
| NciI | CCSGG | 4 cut(s) | 1012, 1362, 1770, 1942 |
| NdeII | GATC | 7 cut(s) | 12, 28, 106, 187, 770, 1698, 1945 |
| NgoMIV | GCCGGC | 1 cut(s) | 1677 |
| NheI | GCTAGC | 1 cut(s) | 1238 |
| NlaIII | CATG | 5 cut(s) | 113, 1079, 1561, 1846, 2423 |
| NmeAIII | GCCGAG | 4 cut(s) | 1670, 1876, 2290, 2369 |
| NmuCI | GTSAC | 5 cut(s) | 34, 211, 774, 2044, 2071 |
| NruI | TCGCGA | 1 cut(s) | 1788 |
| NspV | TTCGAA | 1 cut(s) | 1797 |
| OliI | CACNNNNGTG | 2 cut(s) | 788, 2001 |
| PceI | AGGCCT | 1 cut(s) | 1403 |
| PciSI | GCTCTTC | 1 cut(s) | 2457 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 696, 1064, 1156, 1755 |
| PctI | GAATGC | 2 cut(s) | 1282, 1793 |
| PdiI | GCCGGC | 1 cut(s) | 1679 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1611 |
| PfeI | GAWTC | 5 cut(s) | 1007, 1055, 1283, 1480, 1705 |
| PflFI | GACNNNGTC | 3 cut(s) | 340, 414, 495 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1131 |
| Ple19I | CGATCG | 1 cut(s) | 773 |
| PleI | GAGTC | 5 cut(s) | 1709, 1791, 1921, 2100, 2137 |
| PmaCI | CACGTG | 1 cut(s) | 626 |
| PmlI | CACGTG | 1 cut(s) | 626 |
| PpsI | GAGTC | 5 cut(s) | 1709, 1791, 1921, 2100, 2137 |
| Ppu21I | YACGTR | 3 cut(s) | 557, 626, 1636 |
| PpuMI | RGGWCCY | 1 cut(s) | 1737 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2078 |
| Psp124BI | GAGCTC | 3 cut(s) | 705, 1172, 2469 |
| Psp5II | RGGWCCY | 1 cut(s) | 1737 |
| Psp6I | CCWGG | 2 cut(s) | 820, 1491 |
| PspCI | CACGTG | 1 cut(s) | 626 |
| PspFI | CCCAGC | 5 cut(s) | 634, 911, 1414, 1866, 2087 |
| PspGI | CCWGG | 2 cut(s) | 820, 1491 |
| PspOMI | GGGCCC | 1 cut(s) | 2172 |
| PspPPI | RGGWCCY | 1 cut(s) | 1737 |
| PsyI | GACNNNGTC | 3 cut(s) | 340, 414, 495 |
| PvuI | CGATCG | 1 cut(s) | 773 |
| RruI | TCGCGA | 1 cut(s) | 1788 |
| RsaI | GTAC | 6 cut(s) | 5, 130, 595, 630, 819, 1634 |
| RsaNI | GTAC | 6 cut(s) | 4, 129, 594, 629, 818, 1633 |
| RseI | CAYNNNNRTG | 3 cut(s) | 788, 1620, 2001 |
| SacI | GAGCTC | 3 cut(s) | 705, 1172, 2469 |
| SacII | CCGCGG | 1 cut(s) | 2453 |
| SalI | GTCGAC | 1 cut(s) | 1316 |
| SapI | GCTCTTC | 1 cut(s) | 2457 |
| SaqAI | TTAA | 3 cut(s) | 165, 252, 1332 |
| Sau3AI | GATC | 7 cut(s) | 12, 28, 106, 187, 770, 1698, 1945 |
| ScaI | AGTACT | 1 cut(s) | 130 |
| SchI | GAGTC | 5 cut(s) | 1709, 1792, 1921, 2101, 2138 |
| ScrFI | CCNGG | 6 cut(s) | 822, 1012, 1362, 1493, 1770, 1942 |
| SduI | GDGCHC | 6 cut(s) | 705, 785, 1172, 1367, 2176, 2469 |
| SfaNI | GCATC | 2 cut(s) | 1398, 1977 |
| SfcI | CTRYAG | 2 cut(s) | 562, 1752 |
| Sfr303I | CCGCGG | 1 cut(s) | 2453 |
| SfuI | TTCGAA | 1 cut(s) | 1797 |
| SgrBI | CCGCGG | 1 cut(s) | 2453 |
| SgrDI | CGTCGACG | 1 cut(s) | 1316 |
| SinI | GGWCC | 4 cut(s) | 225, 1737, 1810, 2006 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 788, 1620, 2001 |
| SmlI | CTYRAG | 5 cut(s) | 124, 170, 251, 502, 1669 |
| SmoI | CTYRAG | 5 cut(s) | 124, 170, 251, 502, 1669 |
| SnaBI | TACGTA | 1 cut(s) | 557 |
| Sse9I | AATT | 8 cut(s) | 85, 93, 145, 256, 674, 1502, 1828, 2367 |
| SseBI | AGGCCT | 1 cut(s) | 1403 |
| SspI | AATATT | 1 cut(s) | 799 |
| SspMI | CTAG | 6 cut(s) | 686, 1173, 1203, 1239, 2342, 2491 |
| SstI | GAGCTC | 3 cut(s) | 705, 1172, 2469 |
| StuI | AGGCCT | 1 cut(s) | 1403 |
| StyD4I | CCNGG | 6 cut(s) | 820, 1010, 1360, 1491, 1768, 1940 |
| StyI | CCWWGG | 2 cut(s) | 648, 2049 |
| TaiI | ACGT | 5 cut(s) | 559, 628, 984, 1638, 1895 |
| TaqII | GACCGA | 1 cut(s) | 734 |
| TasI | AATT | 8 cut(s) | 85, 93, 145, 256, 674, 1502, 1828, 2367 |
| TatI | WGTACW | 2 cut(s) | 3, 128 |
| TfiI | GAWTC | 5 cut(s) | 1007, 1055, 1283, 1480, 1705 |
| Tru1I | TTAA | 3 cut(s) | 165, 252, 1332 |
| Tru9I | TTAA | 3 cut(s) | 165, 252, 1332 |
| TscAI | CASTG | 6 cut(s) | 13, 372, 813, 1006, 1095, 2070 |
| TseFI | GTSAC | 5 cut(s) | 34, 211, 774, 2044, 2071 |
| TseI | GCWGC | 7 cut(s) | 1190, 1193, 1235, 1375, 1650, 1961, 2446 |
| Tsp45I | GTSAC | 5 cut(s) | 34, 211, 774, 2044, 2071 |
| TspDTI | ATGAA | 3 cut(s) | 252, 1355, 1574 |
| TspGWI | ACGGA | 3 cut(s) | 695, 1056, 1832 |
| TspRI | CASTG | 6 cut(s) | 13, 372, 813, 1006, 1095, 2070 |
| Tth111I | GACNNNGTC | 3 cut(s) | 340, 414, 495 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1131 |
| Vha464I | CTTAAG | 1 cut(s) | 251 |
| VneI | GTGCAC | 1 cut(s) | 781 |
| VpaK11BI | GGWCC | 4 cut(s) | 225, 1737, 1810, 2006 |
| XapI | RAATTY | 5 cut(s) | 85, 145, 256, 674, 1502 |
| XmiI | GTMKAC | 2 cut(s) | 748, 1317 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1611 |
| XspI | CTAG | 6 cut(s) | 686, 1173, 1203, 1239, 2342, 2491 |
| ZrmI | AGTACT | 1 cut(s) | 130 |