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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 590 |
| AccB1I | GGYRCC | 3 cut(s) | 338, 374, 590 |
| AccBSI | CCGCTC | 2 cut(s) | 16, 145 |
| AccI | GTMKAC | 1 cut(s) | 354 |
| AccII | CGCG | 5 cut(s) | 131, 410, 553, 619, 621 |
| AclWI | GGATC | 2 cut(s) | 93, 640 |
| AcoI | YGGCCR | 2 cut(s) | 72, 267 |
| AcuI | CTGAAG | 1 cut(s) | 342 |
| AcyI | GRCGYC | 3 cut(s) | 51, 339, 375 |
| AfaI | GTAC | 1 cut(s) | 592 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 81 |
| AflIII | ACRYGT | 2 cut(s) | 357, 546 |
| AgsI | TTSAA | 2 cut(s) | 281, 289 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 606 |
| AjiI | CACGTC | 1 cut(s) | 547 |
| AluBI | AGCT | 5 cut(s) | 64, 169, 292, 326, 395 |
| AluI | AGCT | 5 cut(s) | 64, 169, 292, 326, 395 |
| Alw26I | GTCTC | 3 cut(s) | 112, 431, 593 |
| AlwI | GGATC | 2 cut(s) | 93, 640 |
| Ama87I | CYCGRG | 2 cut(s) | 458, 579 |
| AoxI | GGCC | 2 cut(s) | 72, 267 |
| ApeKI | GCWGC | 7 cut(s) | 57, 133, 136, 181, 326, 480, 571 |
| Asp718I | GGTACC | 1 cut(s) | 590 |
| AspLEI | GCGC | 8 cut(s) | 133, 341, 377, 412, 571, 576, 619, 621 |
| AspS9I | GGNCC | 3 cut(s) | 497, 513, 624 |
| AsuC2I | CCSGG | 2 cut(s) | 580, 581 |
| AsuHPI | GGTGA | 1 cut(s) | 239 |
| AvaI | CYCGRG | 2 cut(s) | 458, 579 |
| AvaII | GGWCC | 3 cut(s) | 497, 513, 624 |
| BaeGI | GKGCMC | 1 cut(s) | 472 |
| BanI | GGYRCC | 3 cut(s) | 338, 374, 590 |
| BbvI | GCAGC | 7 cut(s) | 69, 120, 123, 193, 313, 492, 583 |
| BccI | CCATC | 3 cut(s) | 83, 386, 581 |
| BceAI | ACGGC | 2 cut(s) | 260, 630 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 449, 483 |
| BcnI | CCSGG | 2 cut(s) | 580, 581 |
| BcoDI | GTCTC | 3 cut(s) | 112, 431, 593 |
| BfaI | CTAG | 2 cut(s) | 89, 606 |
| BfmI | CTRYAG | 1 cut(s) | 137 |
| BfoI | RGCGCY | 2 cut(s) | 342, 378 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 266 |
| Bme1390I | CCNGG | 2 cut(s) | 580, 581 |
| Bme18I | GGWCC | 3 cut(s) | 497, 513, 624 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 606 |
| BmeT110I | CYCGRG | 2 cut(s) | 458, 579 |
| BmgBI | CACGTC | 1 cut(s) | 547 |
| BmgT120I | GGNCC | 3 cut(s) | 497, 513, 624 |
| BmiI | GGNNCC | 6 cut(s) | 340, 376, 514, 515, 592, 625 |
| BmrFI | CCNGG | 2 cut(s) | 580, 581 |
| BmsI | GCATC | 2 cut(s) | 435, 664 |
| BpuMI | CCSGG | 2 cut(s) | 580, 581 |
| BsaHI | GRCGYC | 3 cut(s) | 51, 339, 375 |
| BsaI | GGTCTC | 1 cut(s) | 593 |
| BsaJI | CCNNGG | 2 cut(s) | 459, 579 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 81 |
| Bse1I | ACTGG | 1 cut(s) | 207 |
| BseDI | CCNNGG | 2 cut(s) | 459, 579 |
| BseGI | GGATG | 6 cut(s) | 75, 211, 426, 470, 529, 592 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 81 |
| BseNI | ACTGG | 1 cut(s) | 207 |
| BsePI | GCGCGC | 1 cut(s) | 617 |
| BseSI | GKGCMC | 1 cut(s) | 472 |
| BseX3I | CGGCCG | 1 cut(s) | 267 |
| BseXI | GCAGC | 7 cut(s) | 69, 120, 123, 193, 313, 492, 583 |
| BsgI | GTGCAG | 1 cut(s) | 200 |
| Bsh1236I | CGCG | 5 cut(s) | 131, 410, 553, 619, 621 |
| Bsh1285I | CGRYCG | 1 cut(s) | 270 |
| BshFI | GGCC | 2 cut(s) | 74, 269 |
| BshNI | GGYRCC | 3 cut(s) | 338, 374, 590 |
| BsiEI | CGRYCG | 1 cut(s) | 270 |
| BsiHKCI | CYCGRG | 2 cut(s) | 458, 579 |
| BsiSI | CCGG | 2 cut(s) | 79, 580 |
| BslFI | GGGAC | 2 cut(s) | 33, 499 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 81 |
| BsmAI | GTCTC | 3 cut(s) | 112, 431, 593 |
| BsmFI | GGGAC | 2 cut(s) | 33, 499 |
| BsnI | GGCC | 2 cut(s) | 74, 269 |
| Bso31I | GGTCTC | 1 cut(s) | 593 |
| BsoBI | CYCGRG | 2 cut(s) | 458, 579 |
| Bsp1286I | GDGCHC | 1 cut(s) | 472 |
| Bsp143I | GATC | 4 cut(s) | 85, 126, 628, 645 |
| BspANI | GGCC | 2 cut(s) | 74, 269 |
| BspFNI | CGCG | 5 cut(s) | 131, 410, 553, 619, 621 |
| BspLI | GGNNCC | 6 cut(s) | 340, 376, 514, 515, 592, 625 |
| BspMAI | CTGCAG | 1 cut(s) | 141 |
| BspPI | GGATC | 2 cut(s) | 93, 640 |
| BspT107I | GGYRCC | 3 cut(s) | 338, 374, 590 |
| BspTNI | GGTCTC | 1 cut(s) | 593 |
| BsrBI | CCGCTC | 2 cut(s) | 16, 145 |
| BsrI | ACTGG | 1 cut(s) | 207 |
| BssECI | CCNNGG | 2 cut(s) | 459, 579 |
| BssHII | GCGCGC | 1 cut(s) | 617 |
| BssMI | GATC | 4 cut(s) | 85, 126, 628, 645 |
| BssNI | GRCGYC | 3 cut(s) | 51, 339, 375 |
| Bst4CI | ACNGT | 2 cut(s) | 227, 448 |
| BstACI | GRCGYC | 3 cut(s) | 51, 339, 375 |
| BstC8I | GCNNGC | 5 cut(s) | 55, 62, 337, 555, 619 |
| BstF5I | GGATG | 6 cut(s) | 75, 211, 426, 470, 529, 592 |
| BstFNI | CGCG | 5 cut(s) | 131, 410, 553, 619, 621 |
| BstH2I | RGCGCY | 2 cut(s) | 342, 378 |
| BstHHI | GCGC | 8 cut(s) | 133, 341, 377, 412, 571, 576, 619, 621 |
| BstKTI | GATC | 4 cut(s) | 88, 129, 631, 648 |
| BstMAI | GTCTC | 3 cut(s) | 112, 431, 593 |
| BstMBI | GATC | 4 cut(s) | 85, 126, 628, 645 |
| BstMCI | CGRYCG | 1 cut(s) | 270 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 142, 266, 272, 281, 332, 409 |
| BstNSI | RCATGY | 1 cut(s) | 361 |
| BstSCI | CCNGG | 2 cut(s) | 578, 579 |
| BstSFI | CTRYAG | 1 cut(s) | 137 |
| BstSLI | GKGCMC | 1 cut(s) | 472 |
| BstUI | CGCG | 5 cut(s) | 131, 410, 553, 619, 621 |
| BstV1I | GCAGC | 7 cut(s) | 69, 120, 123, 193, 313, 492, 583 |
| BstX2I | RGATCY | 1 cut(s) | 85 |
| BstYI | RGATCY | 1 cut(s) | 85 |
| BstZI | CGGCCG | 1 cut(s) | 267 |
| BsuRI | GGCC | 2 cut(s) | 74, 269 |
| BtgZI | GCGATG | 1 cut(s) | 329 |
| BtrI | CACGTC | 1 cut(s) | 547 |
| BtsCI | GGATG | 6 cut(s) | 75, 211, 426, 470, 529, 592 |
| BtsIMutI | CAGTG | 1 cut(s) | 660 |
| Cac8I | GCNNGC | 5 cut(s) | 55, 62, 337, 555, 619 |
| CciNI | GCGGCCGC | 1 cut(s) | 267 |
| CfoI | GCGC | 8 cut(s) | 133, 341, 377, 412, 571, 576, 619, 621 |
| Cfr13I | GGNCC | 3 cut(s) | 497, 513, 624 |
| Cfr9I | CCCGGG | 1 cut(s) | 579 |
| CseI | GACGC | 2 cut(s) | 59, 416 |
| Csp6I | GTAC | 1 cut(s) | 591 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 433, 468 |
| CviAII | CATG | 1 cut(s) | 358 |
| CviQI | GTAC | 1 cut(s) | 591 |
| DinI | GGCGCC | 2 cut(s) | 340, 376 |
| DpnI | GATC | 4 cut(s) | 87, 128, 630, 647 |
| DpnII | GATC | 4 cut(s) | 85, 126, 628, 645 |
| DriI | GACNNNNNGTC | 1 cut(s) | 606 |
| EaeI | YGGCCR | 2 cut(s) | 72, 267 |
| EagI | CGGCCG | 1 cut(s) | 267 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 606 |
| EciI | GGCGGA | 5 cut(s) | 20, 47, 314, 510, 599 |
| EclXI | CGGCCG | 1 cut(s) | 267 |
| Eco31I | GGTCTC | 1 cut(s) | 593 |
| Eco47I | GGWCC | 3 cut(s) | 497, 513, 624 |
| Eco52I | CGGCCG | 1 cut(s) | 267 |
| Eco57I | CTGAAG | 1 cut(s) | 342 |
| Eco88I | CYCGRG | 2 cut(s) | 458, 579 |
| EcoO109I | RGGNCCY | 1 cut(s) | 513 |
| EgeI | GGCGCC | 2 cut(s) | 340, 376 |
| EheI | GGCGCC | 2 cut(s) | 340, 376 |
| FaeI | CATG | 1 cut(s) | 361 |
| FaiI | YATR | 5 cut(s) | 45, 306, 359, 503, 596 |
| FaqI | GGGAC | 2 cut(s) | 33, 499 |
| FatI | CATG | 1 cut(s) | 357 |
| FauI | CCCGC | 5 cut(s) | 9, 62, 75, 177, 614 |
| FblI | GTMKAC | 1 cut(s) | 354 |
| FokI | GGATG | 6 cut(s) | 62, 218, 413, 477, 516, 599 |
| FspBI | CTAG | 2 cut(s) | 89, 606 |
| GlaI | GCGC | 8 cut(s) | 132, 340, 376, 411, 570, 575, 618, 620 |
| HaeII | RGCGCY | 2 cut(s) | 342, 378 |
| HaeIII | GGCC | 2 cut(s) | 74, 269 |
| HapII | CCGG | 2 cut(s) | 79, 580 |
| HgaI | GACGC | 2 cut(s) | 59, 416 |
| HhaI | GCGC | 8 cut(s) | 133, 341, 377, 412, 571, 576, 619, 621 |
| Hin1I | GRCGYC | 3 cut(s) | 51, 339, 375 |
| Hin1II | CATG | 1 cut(s) | 361 |
| Hin6I | GCGC | 8 cut(s) | 131, 339, 375, 410, 569, 574, 617, 619 |
| HinP1I | GCGC | 8 cut(s) | 131, 339, 375, 410, 569, 574, 617, 619 |
| HindIII | AAGCTT | 2 cut(s) | 62, 393 |
| HinfI | GANTC | 2 cut(s) | 188, 637 |
| HpaII | CCGG | 2 cut(s) | 79, 580 |
| HphI | GGTGA | 1 cut(s) | 239 |
| Hpy166II | GTNNAC | 1 cut(s) | 355 |
| Hpy188I | TCNGA | 3 cut(s) | 544, 612, 628 |
| Hpy188III | TCNNGA | 3 cut(s) | 89, 388, 458 |
| Hpy8I | GTNNAC | 1 cut(s) | 355 |
| Hpy99I | CGWCG | 2 cut(s) | 544, 616 |
| HpyAV | CCTTC | 4 cut(s) | 325, 364, 503, 674 |
| HpyCH4III | ACNGT | 2 cut(s) | 227, 448 |
| HpyCH4IV | ACGT | 2 cut(s) | 351, 546 |
| HpyCH4V | TGCA | 2 cut(s) | 139, 181 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 142, 266, 272, 281, 332, 409 |
| HpySE526I | ACGT | 2 cut(s) | 351, 546 |
| Hsp92I | GRCGYC | 3 cut(s) | 51, 339, 375 |
| Hsp92II | CATG | 1 cut(s) | 361 |
| HspAI | GCGC | 8 cut(s) | 131, 339, 375, 410, 569, 574, 617, 619 |
| KasI | GGCGCC | 2 cut(s) | 338, 374 |
| KflI | GGGWCCC | 1 cut(s) | 513 |
| KpnI | GGTACC | 1 cut(s) | 594 |
| Kzo9I | GATC | 4 cut(s) | 85, 126, 628, 645 |
| LmnI | GCTCC | 2 cut(s) | 142, 460 |
| Lsp1109I | GCAGC | 7 cut(s) | 69, 120, 123, 193, 313, 492, 583 |
| LweI | GCATC | 2 cut(s) | 435, 664 |
| MaeI | CTAG | 2 cut(s) | 89, 606 |
| MaeII | ACGT | 2 cut(s) | 351, 546 |
| MaeIII | GTNAC | 1 cut(s) | 638 |
| MalI | GATC | 4 cut(s) | 87, 128, 630, 647 |
| MbiI | CCGCTC | 2 cut(s) | 16, 145 |
| MboI | GATC | 4 cut(s) | 85, 126, 628, 645 |
| MboII | GAAGA | 1 cut(s) | 683 |
| MflI | RGATCY | 1 cut(s) | 85 |
| MhlI | GDGCHC | 1 cut(s) | 472 |
| Mly113I | GGCGCC | 2 cut(s) | 339, 375 |
| MlyI | GAGTC | 2 cut(s) | 197, 646 |
| MmeI | TCCRAC | 2 cut(s) | 522, 635 |
| MnlI | CCTC | 5 cut(s) | 87, 223, 357, 454, 537 |
| MseI | TTAA | 1 cut(s) | 66 |
| MslI | CAYNNNNRTG | 1 cut(s) | 176 |
| MspA1I | CMGCKG | 2 cut(s) | 184, 483 |
| MspI | CCGG | 2 cut(s) | 79, 580 |
| MspR9I | CCNGG | 2 cut(s) | 580, 581 |
| MteI | GCGCNGCGC | 1 cut(s) | 572 |
| MvnI | CGCG | 5 cut(s) | 131, 410, 553, 619, 621 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 142, 266, 272, 281, 332, 409 |
| NarI | GGCGCC | 2 cut(s) | 339, 375 |
| NciI | CCSGG | 2 cut(s) | 580, 581 |
| NdeII | GATC | 4 cut(s) | 85, 126, 628, 645 |
| NlaIII | CATG | 1 cut(s) | 361 |
| NlaIV | GGNNCC | 6 cut(s) | 340, 376, 514, 515, 592, 625 |
| NmuCI | GTSAC | 1 cut(s) | 638 |
| NotI | GCGGCCGC | 1 cut(s) | 267 |
| NspI | RCATGY | 1 cut(s) | 361 |
| PauI | GCGCGC | 1 cut(s) | 617 |
| PciI | ACATGT | 1 cut(s) | 357 |
| PleI | GAGTC | 2 cut(s) | 196, 645 |
| PluTI | GGCGCC | 2 cut(s) | 342, 378 |
| PpsI | GAGTC | 2 cut(s) | 196, 645 |
| PpuMI | RGGWCCY | 1 cut(s) | 513 |
| PscI | ACATGT | 1 cut(s) | 357 |
| Psp5II | RGGWCCY | 1 cut(s) | 513 |
| PspN4I | GGNNCC | 6 cut(s) | 340, 376, 514, 515, 592, 625 |
| PspPI | GGNCC | 3 cut(s) | 497, 513, 624 |
| PspPPI | RGGWCCY | 1 cut(s) | 513 |
| PstI | CTGCAG | 1 cut(s) | 141 |
| PsuI | RGATCY | 1 cut(s) | 85 |
| PteI | GCGCGC | 1 cut(s) | 617 |
| RsaI | GTAC | 1 cut(s) | 592 |
| RsaNI | GTAC | 1 cut(s) | 591 |
| RseI | CAYNNNNRTG | 1 cut(s) | 176 |
| SaqAI | TTAA | 1 cut(s) | 66 |
| Sau3AI | GATC | 4 cut(s) | 85, 126, 628, 645 |
| Sau96I | GGNCC | 3 cut(s) | 497, 513, 624 |
| SchI | GAGTC | 2 cut(s) | 197, 646 |
| ScrFI | CCNGG | 2 cut(s) | 580, 581 |
| SduI | GDGCHC | 1 cut(s) | 472 |
| SfaNI | GCATC | 2 cut(s) | 435, 664 |
| SfcI | CTRYAG | 1 cut(s) | 137 |
| SfoI | GGCGCC | 2 cut(s) | 340, 376 |
| SinI | GGWCC | 3 cut(s) | 497, 513, 624 |
| SmaI | CCCGGG | 1 cut(s) | 581 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 176 |
| SspDI | GGCGCC | 2 cut(s) | 338, 374 |
| SspMI | CTAG | 2 cut(s) | 89, 606 |
| StyD4I | CCNGG | 2 cut(s) | 578, 579 |
| TaaI | ACNGT | 2 cut(s) | 227, 448 |
| TaiI | ACGT | 2 cut(s) | 354, 549 |
| TaqI | TCGA | 3 cut(s) | 12, 381, 644 |
| Tru1I | TTAA | 1 cut(s) | 66 |
| Tru9I | TTAA | 1 cut(s) | 66 |
| TscAI | CASTG | 1 cut(s) | 667 |
| TseFI | GTSAC | 1 cut(s) | 638 |
| TseI | GCWGC | 7 cut(s) | 57, 133, 136, 181, 326, 480, 571 |
| Tsp45I | GTSAC | 1 cut(s) | 638 |
| TspDTI | ATGAA | 2 cut(s) | 114, 227 |
| TspMI | CCCGGG | 1 cut(s) | 579 |
| TspRI | CASTG | 1 cut(s) | 667 |
| VpaK11BI | GGWCC | 3 cut(s) | 497, 513, 624 |
| XbaI | TCTAGA | 1 cut(s) | 88 |
| XceI | RCATGY | 1 cut(s) | 361 |
| XmaI | CCCGGG | 1 cut(s) | 579 |
| XmiI | GTMKAC | 1 cut(s) | 354 |
| XspI | CTAG | 2 cut(s) | 89, 606 |