Putative gypsy type transposon
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 180 |
| AccB1I | GGYRCC | 3 cut(s) | 647, 835, 1447 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 327, 471 |
| AccBSI | CCGCTC | 4 cut(s) | 1689, 1765, 2044, 2056 |
| AccI | GTMKAC | 1 cut(s) | 1802 |
| AccII | CGCG | 5 cut(s) | 230, 374, 791, 1443, 1543 |
| AclI | AACGTT | 1 cut(s) | 2031 |
| AclWI | GGATC | 4 cut(s) | 217, 361, 844, 1224 |
| AcoI | YGGCCR | 1 cut(s) | 171 |
| AcsI | RAATTY | 2 cut(s) | 241, 385 |
| AcuI | CTGAAG | 4 cut(s) | 234, 378, 722, 1535 |
| AcvI | CACGTG | 2 cut(s) | 15, 158 |
| AcyI | GRCGYC | 5 cut(s) | 117, 177, 1272, 1880, 2013 |
| AfaI | GTAC | 4 cut(s) | 995, 1088, 1540, 1684 |
| AflIII | ACRYGT | 3 cut(s) | 12, 155, 897 |
| AgsI | TTSAA | 2 cut(s) | 768, 1241 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1081 |
| AjnI | CCWGG | 4 cut(s) | 852, 1005, 1872, 1893 |
| AleI | CACNNNNGTG | 1 cut(s) | 1664 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1728, 1760 |
| AluBI | AGCT | 8 cut(s) | 147, 608, 736, 1057, 1386, 1909, 1942, 2026 |
| AluI | AGCT | 8 cut(s) | 147, 608, 736, 1057, 1386, 1909, 1942, 2026 |
| Alw21I | GWGCWC | 2 cut(s) | 798, 1911 |
| Alw26I | GTCTC | 2 cut(s) | 74, 1193 |
| Alw44I | GTGCAC | 1 cut(s) | 794 |
| AlwI | GGATC | 4 cut(s) | 217, 361, 844, 1224 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 212, 356, 853 |
| Ama87I | CYCGRG | 1 cut(s) | 1576 |
| AoxI | GGCC | 5 cut(s) | 171, 781, 1611, 1950, 1992 |
| ApaI | GGGCCC | 1 cut(s) | 1615 |
| ApaLI | GTGCAC | 1 cut(s) | 794 |
| ApeKI | GCWGC | 4 cut(s) | 736, 910, 1134, 1529 |
| ApoI | RAATTY | 2 cut(s) | 241, 385 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1549, 1581 |
| AseI | ATTAAT | 1 cut(s) | 81 |
| AspS9I | GGNCC | 8 cut(s) | 781, 953, 1396, 1545, 1611, 1612, 1927, 1951 |
| AsuC2I | CCSGG | 5 cut(s) | 723, 1251, 1367, 1400, 1609 |
| AsuHPI | GGTGA | 5 cut(s) | 1372, 1444, 1474, 1745, 1745 |
| AvaI | CYCGRG | 1 cut(s) | 1576 |
| AvaII | GGWCC | 4 cut(s) | 953, 1396, 1545, 1927 |
| AxyI | CCTNAGG | 1 cut(s) | 1070 |
| BaeGI | GKGCMC | 5 cut(s) | 798, 840, 893, 1615, 1845 |
| BanI | GGYRCC | 3 cut(s) | 647, 835, 1447 |
| BanII | GRGCYC | 2 cut(s) | 1615, 1911 |
| BauI | CACGAG | 4 cut(s) | 797, 1119, 1230, 1616 |
| BbrPI | CACGTG | 2 cut(s) | 15, 158 |
| Bbv12I | GWGCWC | 2 cut(s) | 798, 1911 |
| BbvI | GCAGC | 4 cut(s) | 723, 897, 1146, 1516 |
| BccI | CCATC | 3 cut(s) | 89, 163, 1501 |
| BceAI | ACGGC | 7 cut(s) | 51, 661, 674, 1251, 1454, 1548, 1793 |
| BciT130I | CCWGG | 4 cut(s) | 854, 1007, 1874, 1895 |
| BciVI | GTATCC | 1 cut(s) | 610 |
| BcnI | CCSGG | 5 cut(s) | 723, 1251, 1367, 1400, 1609 |
| BcoDI | GTCTC | 2 cut(s) | 74, 1193 |
| BfaI | CTAG | 6 cut(s) | 63, 192, 299, 443, 513, 560 |
| BfmI | CTRYAG | 4 cut(s) | 142, 314, 458, 845 |
| BfoI | RGCGCY | 6 cut(s) | 559, 729, 920, 1006, 1382, 1430 |
| BfuI | GTATCC | 1 cut(s) | 610 |
| BlpI | GCTNAGC | 1 cut(s) | 1382 |
| Bme1390I | CCNGG | 9 cut(s) | 723, 854, 1007, 1251, 1367, 1400, 1609, 1874, 1895 |
| Bme18I | GGWCC | 4 cut(s) | 953, 1396, 1545, 1927 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1081 |
| BmeT110I | CYCGRG | 1 cut(s) | 1576 |
| BmgT120I | GGNCC | 8 cut(s) | 781, 953, 1396, 1545, 1611, 1612, 1927, 1951 |
| BmrFI | CCNGG | 9 cut(s) | 723, 854, 1007, 1251, 1367, 1400, 1609, 1874, 1895 |
| BmsI | GCATC | 5 cut(s) | 35, 879, 1155, 1401, 1970 |
| BoxI | GACNNNNGTC | 2 cut(s) | 1185, 1808 |
| BpmI | CTGGAG | 3 cut(s) | 1180, 1554, 1916 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1910 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1382 |
| BpuMI | CCSGG | 5 cut(s) | 723, 1251, 1367, 1400, 1609 |
| BsaAI | YACGTR | 3 cut(s) | 15, 158, 997 |
| BsaHI | GRCGYC | 5 cut(s) | 117, 177, 1272, 1880, 2013 |
| BsaWI | WCCGGW | 1 cut(s) | 714 |
| Bse118I | RCCGGY | 2 cut(s) | 696, 1429 |
| Bse1I | ACTGG | 3 cut(s) | 776, 993, 1094 |
| Bse21I | CCTNAGG | 1 cut(s) | 1070 |
| Bse3DI | GCAATG | 1 cut(s) | 494 |
| BseBI | CCWGG | 4 cut(s) | 854, 1007, 1874, 1895 |
| BseGI | GGATG | 3 cut(s) | 50, 174, 681 |
| BseMI | GCAATG | 1 cut(s) | 494 |
| BseMII | CTCAG | 7 cut(s) | 135, 1045, 1061, 1361, 1373, 1383, 1924 |
| BseNI | ACTGG | 3 cut(s) | 776, 993, 1094 |
| BseRI | GAGGAG | 3 cut(s) | 45, 62, 1635 |
| BseSI | GKGCMC | 5 cut(s) | 798, 840, 893, 1615, 1845 |
| BseXI | GCAGC | 4 cut(s) | 723, 897, 1146, 1516 |
| BseYI | CCCAGC | 4 cut(s) | 608, 1200, 1768, 1942 |
| BsgI | GTGCAG | 3 cut(s) | 294, 438, 1153 |
| Bsh1236I | CGCG | 5 cut(s) | 230, 374, 791, 1443, 1543 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1802, 1806 |
| BshFI | GGCC | 5 cut(s) | 173, 783, 1613, 1952, 1994 |
| BshNI | GGYRCC | 3 cut(s) | 647, 835, 1447 |
| BsiEI | CGRYCG | 2 cut(s) | 1802, 1806 |
| BsiHKAI | GWGCWC | 2 cut(s) | 798, 1911 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1576 |
| BsiSI | CCGG | 8 cut(s) | 697, 715, 723, 1250, 1367, 1400, 1430, 1608 |
| BslFI | GGGAC | 7 cut(s) | 166, 344, 488, 966, 1023, 1088, 1382 |
| BsmAI | GTCTC | 2 cut(s) | 74, 1193 |
| BsmBI | CGTCTC | 2 cut(s) | 74, 1193 |
| BsmFI | GGGAC | 7 cut(s) | 166, 344, 488, 966, 1023, 1088, 1382 |
| BsnI | GGCC | 5 cut(s) | 173, 783, 1613, 1952, 1994 |
| BsoBI | CYCGRG | 1 cut(s) | 1576 |
| Bsp120I | GGGCCC | 1 cut(s) | 1611 |
| Bsp1286I | GDGCHC | 6 cut(s) | 798, 840, 893, 1615, 1845, 1911 |
| Bsp143I | GATC | 4 cut(s) | 209, 353, 849, 1216 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1382 |
| BspANI | GGCC | 5 cut(s) | 173, 783, 1613, 1952, 1994 |
| BspCNI | CTCAG | 7 cut(s) | 134, 1044, 1062, 1360, 1374, 1384, 1923 |
| BspFNI | CGCG | 5 cut(s) | 230, 374, 791, 1443, 1543 |
| BspPI | GGATC | 4 cut(s) | 217, 361, 844, 1224 |
| BspQI | GCTCTTC | 1 cut(s) | 546 |
| BspT107I | GGYRCC | 3 cut(s) | 647, 835, 1447 |
| BsrBI | CCGCTC | 4 cut(s) | 1689, 1765, 2044, 2056 |
| BsrDI | GCAATG | 1 cut(s) | 494 |
| BsrFI | RCCGGY | 2 cut(s) | 696, 1429 |
| BsrI | ACTGG | 3 cut(s) | 776, 993, 1094 |
| BssAI | RCCGGY | 2 cut(s) | 696, 1429 |
| BssMI | GATC | 4 cut(s) | 209, 353, 849, 1216 |
| BssNI | GRCGYC | 5 cut(s) | 117, 177, 1272, 1880, 2013 |
| BssSI | CACGAG | 4 cut(s) | 797, 1119, 1230, 1616 |
| BssT1I | CCWWGG | 2 cut(s) | 960, 1042 |
| Bst2BI | CACGAG | 4 cut(s) | 797, 1119, 1230, 1616 |
| Bst2UI | CCWGG | 4 cut(s) | 854, 1007, 1874, 1895 |
| Bst4CI | ACNGT | 5 cut(s) | 143, 481, 751, 1678, 1733 |
| Bst6I | CTCTTC | 6 cut(s) | 546, 698, 1122, 1346, 1581, 1587 |
| BstACI | GRCGYC | 5 cut(s) | 117, 177, 1272, 1880, 2013 |
| BstBAI | YACGTR | 3 cut(s) | 15, 158, 997 |
| BstDEI | CTNAG | 7 cut(s) | 121, 1031, 1070, 1347, 1382, 1392, 1910 |
| BstDSI | CCRYGG | 4 cut(s) | 326, 470, 789, 2017 |
| BstEII | GGTNACC | 1 cut(s) | 1603 |
| BstF5I | GGATG | 3 cut(s) | 50, 174, 681 |
| BstFNI | CGCG | 5 cut(s) | 230, 374, 791, 1443, 1543 |
| BstH2I | RGCGCY | 6 cut(s) | 559, 729, 920, 1006, 1382, 1430 |
| BstKTI | GATC | 4 cut(s) | 212, 356, 852, 1219 |
| BstMAI | GTCTC | 2 cut(s) | 74, 1193 |
| BstMBI | GATC | 4 cut(s) | 209, 353, 849, 1216 |
| BstMCI | CGRYCG | 2 cut(s) | 1802, 1806 |
| BstNI | CCWGG | 4 cut(s) | 854, 1007, 1874, 1895 |
| BstNSI | RCATGY | 1 cut(s) | 901 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 1185, 1808 |
| BstPI | GGTNACC | 1 cut(s) | 1603 |
| BstSCI | CCNGG | 9 cut(s) | 721, 852, 1005, 1249, 1365, 1398, 1607, 1872, 1893 |
| BstSFI | CTRYAG | 4 cut(s) | 142, 314, 458, 845 |
| BstSLI | GKGCMC | 5 cut(s) | 798, 840, 893, 1615, 1845 |
| BstUI | CGCG | 5 cut(s) | 230, 374, 791, 1443, 1543 |
| BstV1I | GCAGC | 4 cut(s) | 723, 897, 1146, 1516 |
| BstX2I | RGATCY | 3 cut(s) | 209, 353, 849 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1666 |
| BstYI | RGATCY | 3 cut(s) | 209, 353, 849 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1070 |
| BsuI | GTATCC | 1 cut(s) | 610 |
| BsuRI | GGCC | 5 cut(s) | 173, 783, 1613, 1952, 1994 |
| BtgI | CCRYGG | 4 cut(s) | 326, 470, 789, 2017 |
| BtgZI | GCGATG | 3 cut(s) | 856, 1993, 2016 |
| BtsCI | GGATG | 3 cut(s) | 50, 174, 681 |
| BtsI | GCAGTG | 4 cut(s) | 202, 284, 346, 428 |
| BtsIMutI | CAGTG | 7 cut(s) | 202, 284, 346, 428, 783, 1659, 1683 |
| CaiI | CAGNNNCTG | 3 cut(s) | 212, 356, 853 |
| Cfr10I | RCCGGY | 2 cut(s) | 696, 1429 |
| Cfr13I | GGNCC | 8 cut(s) | 781, 953, 1396, 1545, 1611, 1612, 1927, 1951 |
| Cfr42I | CCGCGG | 1 cut(s) | 792 |
| CseI | GACGC | 8 cut(s) | 125, 488, 728, 1038, 1280, 1320, 1869, 2021 |
| Csp6I | GTAC | 4 cut(s) | 994, 1087, 1539, 1683 |
| CviAII | CATG | 4 cut(s) | 898, 1288, 1324, 1862 |
| CviQI | GTAC | 4 cut(s) | 994, 1087, 1539, 1683 |
| DdeI | CTNAG | 7 cut(s) | 121, 1031, 1070, 1347, 1382, 1392, 1910 |
| DpnI | GATC | 4 cut(s) | 211, 355, 851, 1218 |
| DpnII | GATC | 4 cut(s) | 209, 353, 849, 1216 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1081 |
| EaeI | YGGCCR | 1 cut(s) | 171 |
| Eam1104I | CTCTTC | 6 cut(s) | 546, 698, 1122, 1346, 1581, 1587 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1081 |
| EarI | CTCTTC | 6 cut(s) | 546, 698, 1122, 1346, 1581, 1587 |
| EciI | GGCGGA | 4 cut(s) | 248, 392, 732, 980 |
| Ecl136II | GAGCTC | 1 cut(s) | 1909 |
| Eco130I | CCWWGG | 2 cut(s) | 960, 1042 |
| Eco24I | GRGCYC | 2 cut(s) | 1615, 1911 |
| Eco47I | GGWCC | 4 cut(s) | 953, 1396, 1545, 1927 |
| Eco53kI | GAGCTC | 1 cut(s) | 1909 |
| Eco57I | CTGAAG | 4 cut(s) | 234, 378, 722, 1535 |
| Eco72I | CACGTG | 2 cut(s) | 15, 158 |
| Eco81I | CCTNAGG | 1 cut(s) | 1070 |
| Eco88I | CYCGRG | 1 cut(s) | 1576 |
| Eco91I | GGTNACC | 1 cut(s) | 1603 |
| EcoICRI | GAGCTC | 1 cut(s) | 1909 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1396, 1611 |
| EcoO65I | GGTNACC | 1 cut(s) | 1603 |
| EcoRII | CCWGG | 4 cut(s) | 852, 1005, 1872, 1893 |
| EcoT14I | CCWWGG | 2 cut(s) | 960, 1042 |
| EcoT38I | GRGCYC | 2 cut(s) | 1615, 1911 |
| ErhI | CCWWGG | 2 cut(s) | 960, 1042 |
| Esp3I | CGTCTC | 2 cut(s) | 74, 1193 |
| FaeI | CATG | 4 cut(s) | 901, 1291, 1327, 1865 |
| FaqI | GGGAC | 7 cut(s) | 166, 344, 488, 966, 1023, 1088, 1382 |
| FatI | CATG | 4 cut(s) | 897, 1287, 1323, 1861 |
| FauI | CCCGC | 7 cut(s) | 511, 587, 658, 837, 1090, 1483, 1574 |
| FblI | GTMKAC | 1 cut(s) | 1802 |
| FokI | GGATG | 3 cut(s) | 57, 181, 688 |
| FriOI | GRGCYC | 2 cut(s) | 1615, 1911 |
| FspBI | CTAG | 6 cut(s) | 63, 192, 299, 443, 513, 560 |
| GsaI | CCCAGC | 4 cut(s) | 612, 1204, 1772, 1946 |
| GsuI | CTGGAG | 3 cut(s) | 1180, 1554, 1916 |
| HaeII | RGCGCY | 6 cut(s) | 559, 729, 920, 1006, 1382, 1430 |
| HaeIII | GGCC | 5 cut(s) | 173, 783, 1613, 1952, 1994 |
| HapII | CCGG | 8 cut(s) | 697, 715, 723, 1250, 1367, 1400, 1430, 1608 |
| HgaI | GACGC | 8 cut(s) | 125, 488, 728, 1038, 1280, 1320, 1869, 2021 |
| Hin1I | GRCGYC | 5 cut(s) | 117, 177, 1272, 1880, 2013 |
| Hin1II | CATG | 4 cut(s) | 901, 1291, 1327, 1865 |
| HincII | GTYRAC | 5 cut(s) | 10, 658, 694, 1568, 1803 |
| HindII | GTYRAC | 5 cut(s) | 10, 658, 694, 1568, 1803 |
| HpaII | CCGG | 8 cut(s) | 697, 715, 723, 1250, 1367, 1400, 1430, 1608 |
| HphI | GGTGA | 5 cut(s) | 1372, 1444, 1474, 1745, 1745 |
| Hpy166II | GTNNAC | 9 cut(s) | 10, 658, 694, 796, 994, 1363, 1568, 1736, 1803 |
| Hpy188I | TCNGA | 5 cut(s) | 214, 358, 1151, 1350, 1393 |
| Hpy188III | TCNNGA | 7 cut(s) | 131, 207, 351, 1121, 1316, 1649, 1933 |
| Hpy8I | GTNNAC | 9 cut(s) | 10, 658, 694, 796, 994, 1363, 1568, 1736, 1803 |
| Hpy99I | CGWCG | 6 cut(s) | 119, 179, 533, 751, 1054, 1733 |
| HpyAV | CCTTC | 5 cut(s) | 754, 835, 1285, 1559, 1942 |
| HpyCH4III | ACNGT | 5 cut(s) | 143, 481, 751, 1678, 1733 |
| HpyCH4IV | ACGT | 9 cut(s) | 14, 157, 177, 259, 333, 403, 996, 1845, 2031 |
| HpyCH4V | TGCA | 6 cut(s) | 275, 419, 494, 547, 796, 1134 |
| HpyF3I | CTNAG | 7 cut(s) | 121, 1031, 1070, 1347, 1382, 1392, 1910 |
| HpySE526I | ACGT | 9 cut(s) | 14, 157, 177, 259, 333, 403, 996, 1845, 2031 |
| Hsp92I | GRCGYC | 5 cut(s) | 117, 177, 1272, 1880, 2013 |
| Hsp92II | CATG | 4 cut(s) | 901, 1291, 1327, 1865 |
| KspI | CCGCGG | 1 cut(s) | 792 |
| Kzo9I | GATC | 4 cut(s) | 209, 353, 849, 1216 |
| LguI | GCTCTTC | 1 cut(s) | 546 |
| LmnI | GCTCC | 6 cut(s) | 733, 1046, 1498, 1648, 1939, 2053 |
| Lsp1109I | GCAGC | 4 cut(s) | 723, 897, 1146, 1516 |
| LweI | GCATC | 5 cut(s) | 35, 879, 1155, 1401, 1970 |
| MaeI | CTAG | 6 cut(s) | 63, 192, 299, 443, 513, 560 |
| MaeII | ACGT | 9 cut(s) | 14, 157, 177, 259, 333, 403, 996, 1845, 2031 |
| MaeIII | GTNAC | 8 cut(s) | 104, 137, 255, 399, 820, 1268, 1480, 1603 |
| MalI | GATC | 4 cut(s) | 211, 355, 851, 1218 |
| MbiI | CCGCTC | 4 cut(s) | 1689, 1765, 2044, 2056 |
| MboI | GATC | 4 cut(s) | 209, 353, 849, 1216 |
| MflI | RGATCY | 3 cut(s) | 209, 353, 849 |
| MhlI | GDGCHC | 6 cut(s) | 798, 840, 893, 1615, 1845, 1911 |
| MluCI | AATT | 3 cut(s) | 241, 385, 1171 |
| MmeI | TCCRAC | 2 cut(s) | 618, 1476 |
| MseI | TTAA | 2 cut(s) | 81, 126 |
| MslI | CAYNNNNRTG | 2 cut(s) | 482, 1664 |
| MspA1I | CMGCKG | 6 cut(s) | 582, 590, 683, 791, 832, 1529 |
| MspI | CCGG | 8 cut(s) | 697, 715, 723, 1250, 1367, 1400, 1430, 1608 |
| MspR9I | CCNGG | 9 cut(s) | 723, 854, 1007, 1251, 1367, 1400, 1609, 1874, 1895 |
| MvaI | CCWGG | 4 cut(s) | 854, 1007, 1874, 1895 |
| MvnI | CGCG | 5 cut(s) | 230, 374, 791, 1443, 1543 |
| NciI | CCSGG | 5 cut(s) | 723, 1251, 1367, 1400, 1609 |
| NdeII | GATC | 4 cut(s) | 209, 353, 849, 1216 |
| NlaIII | CATG | 4 cut(s) | 901, 1291, 1327, 1865 |
| NmuCI | GTSAC | 3 cut(s) | 820, 1268, 1480 |
| NspI | RCATGY | 1 cut(s) | 901 |
| OliI | CACNNNNGTG | 1 cut(s) | 1664 |
| PciI | ACATGT | 1 cut(s) | 897 |
| PciSI | GCTCTTC | 1 cut(s) | 546 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 260, 404, 496, 651 |
| PfeI | GAWTC | 6 cut(s) | 203, 347, 1165, 1319, 1652, 1817 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 327, 471 |
| PmaCI | CACGTG | 2 cut(s) | 15, 158 |
| PmlI | CACGTG | 2 cut(s) | 15, 158 |
| Ppu21I | YACGTR | 3 cut(s) | 15, 158, 997 |
| PpuMI | RGGWCCY | 1 cut(s) | 1396 |
| PscI | ACATGT | 1 cut(s) | 897 |
| PshAI | GACNNNNGTC | 2 cut(s) | 1185, 1808 |
| PshBI | ATTAAT | 1 cut(s) | 81 |
| Psp124BI | GAGCTC | 1 cut(s) | 1911 |
| Psp1406I | AACGTT | 1 cut(s) | 2031 |
| Psp5II | RGGWCCY | 1 cut(s) | 1396 |
| Psp6I | CCWGG | 4 cut(s) | 852, 1005, 1872, 1893 |
| PspCI | CACGTG | 2 cut(s) | 15, 158 |
| PspEI | GGTNACC | 1 cut(s) | 1603 |
| PspFI | CCCAGC | 4 cut(s) | 608, 1200, 1768, 1942 |
| PspGI | CCWGG | 4 cut(s) | 852, 1005, 1872, 1893 |
| PspOMI | GGGCCC | 1 cut(s) | 1611 |
| PspPI | GGNCC | 8 cut(s) | 781, 953, 1396, 1545, 1611, 1612, 1927, 1951 |
| PspPPI | RGGWCCY | 1 cut(s) | 1396 |
| PstNI | CAGNNNCTG | 3 cut(s) | 212, 356, 853 |
| PsuI | RGATCY | 3 cut(s) | 209, 353, 849 |
| RsaI | GTAC | 4 cut(s) | 995, 1088, 1540, 1684 |
| RsaNI | GTAC | 4 cut(s) | 994, 1087, 1539, 1683 |
| RseI | CAYNNNNRTG | 2 cut(s) | 482, 1664 |
| SacI | GAGCTC | 1 cut(s) | 1911 |
| SacII | CCGCGG | 1 cut(s) | 792 |
| SalI | GTCGAC | 1 cut(s) | 1801 |
| SapI | GCTCTTC | 1 cut(s) | 546 |
| SaqAI | TTAA | 2 cut(s) | 81, 126 |
| Sau3AI | GATC | 4 cut(s) | 209, 353, 849, 1216 |
| Sau96I | GGNCC | 8 cut(s) | 781, 953, 1396, 1545, 1611, 1612, 1927, 1951 |
| ScrFI | CCNGG | 9 cut(s) | 723, 854, 1007, 1251, 1367, 1400, 1609, 1874, 1895 |
| SduI | GDGCHC | 6 cut(s) | 798, 840, 893, 1615, 1845, 1911 |
| SfaNI | GCATC | 5 cut(s) | 35, 879, 1155, 1401, 1970 |
| SfcI | CTRYAG | 4 cut(s) | 142, 314, 458, 845 |
| Sfr303I | CCGCGG | 1 cut(s) | 792 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1429 |
| SgrBI | CCGCGG | 1 cut(s) | 792 |
| SinI | GGWCC | 4 cut(s) | 953, 1396, 1545, 1927 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 482, 1664 |
| Sse9I | AATT | 3 cut(s) | 241, 385, 1171 |
| SspMI | CTAG | 6 cut(s) | 63, 192, 299, 443, 513, 560 |
| SstI | GAGCTC | 1 cut(s) | 1911 |
| StyD4I | CCNGG | 9 cut(s) | 721, 852, 1005, 1249, 1365, 1398, 1607, 1872, 1893 |
| StyI | CCWWGG | 2 cut(s) | 960, 1042 |
| TaaI | ACNGT | 5 cut(s) | 143, 481, 751, 1678, 1733 |
| TaiI | ACGT | 9 cut(s) | 17, 160, 180, 262, 336, 406, 999, 1848, 2034 |
| TaqI | TCGA | 7 cut(s) | 306, 450, 1052, 1079, 1572, 1802, 1974 |
| TaqII | GACCGA | 2 cut(s) | 970, 1788 |
| TasI | AATT | 3 cut(s) | 241, 385, 1171 |
| TfiI | GAWTC | 6 cut(s) | 203, 347, 1165, 1319, 1652, 1817 |
| Tru1I | TTAA | 2 cut(s) | 81, 126 |
| Tru9I | TTAA | 2 cut(s) | 81, 126 |
| TscAI | CASTG | 7 cut(s) | 202, 291, 346, 435, 783, 1666, 1683 |
| TseFI | GTSAC | 3 cut(s) | 820, 1268, 1480 |
| TseI | GCWGC | 4 cut(s) | 736, 910, 1134, 1529 |
| Tsp45I | GTSAC | 3 cut(s) | 820, 1268, 1480 |
| TspDTI | ATGAA | 1 cut(s) | 1304 |
| TspGWI | ACGGA | 6 cut(s) | 252, 315, 396, 459, 517, 1487 |
| TspRI | CASTG | 7 cut(s) | 202, 291, 346, 435, 783, 1666, 1683 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 327, 471 |
| VneI | GTGCAC | 1 cut(s) | 794 |
| VpaK11BI | GGWCC | 4 cut(s) | 953, 1396, 1545, 1927 |
| VspI | ATTAAT | 1 cut(s) | 81 |
| XapI | RAATTY | 2 cut(s) | 241, 385 |
| XceI | RCATGY | 1 cut(s) | 901 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1492 |
| XmiI | GTMKAC | 1 cut(s) | 1802 |
| XspI | CTAG | 6 cut(s) | 63, 192, 299, 443, 513, 560 |
| ZraI | GACGTC | 1 cut(s) | 178 |