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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 395, 488 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 405 |
| AccBSI | CCGCTC | 1 cut(s) | 115 |
| AccII | CGCG | 1 cut(s) | 227 |
| AclWI | GGATC | 2 cut(s) | 171, 190 |
| AcsI | RAATTY | 1 cut(s) | 221 |
| AcuI | CTGAAG | 1 cut(s) | 185 |
| AcyI | GRCGYC | 1 cut(s) | 396 |
| AfaI | GTAC | 1 cut(s) | 326 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 405, 461 |
| AgsI | TTSAA | 1 cut(s) | 310 |
| AluBI | AGCT | 5 cut(s) | 22, 85, 136, 169, 205 |
| AluI | AGCT | 5 cut(s) | 22, 85, 136, 169, 205 |
| AlwI | GGATC | 2 cut(s) | 171, 190 |
| Ama87I | CYCGRG | 1 cut(s) | 455 |
| AoxI | GGCC | 4 cut(s) | 288, 354, 360, 431 |
| ApeKI | GCWGC | 3 cut(s) | 65, 157, 173 |
| ApoI | RAATTY | 1 cut(s) | 221 |
| AspLEI | GCGC | 1 cut(s) | 398 |
| AspS9I | GGNCC | 2 cut(s) | 360, 431 |
| AsuC2I | CCSGG | 1 cut(s) | 358 |
| AsuHPI | GGTGA | 1 cut(s) | 260 |
| AvaI | CYCGRG | 1 cut(s) | 455 |
| BaeGI | GKGCMC | 1 cut(s) | 493 |
| BanI | GGYRCC | 2 cut(s) | 395, 488 |
| BbvCI | CCTCAGC | 1 cut(s) | 483 |
| BbvI | GCAGC | 3 cut(s) | 77, 144, 160 |
| BccI | CCATC | 2 cut(s) | 277, 407 |
| BceAI | ACGGC | 2 cut(s) | 347, 418 |
| BcnI | CCSGG | 1 cut(s) | 358 |
| BfoI | RGCGCY | 1 cut(s) | 399 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 302, 430 |
| BisI | GCNGC | 7 cut(s) | 66, 158, 174, 216, 291, 294, 348 |
| BlpI | GCTNAGC | 1 cut(s) | 132 |
| BlsI | GCNGC | 7 cut(s) | 67, 159, 175, 217, 292, 295, 349 |
| Bme1390I | CCNGG | 1 cut(s) | 358 |
| BmeT110I | CYCGRG | 1 cut(s) | 455 |
| BmgT120I | GGNCC | 2 cut(s) | 360, 431 |
| BmiI | GGNNCC | 4 cut(s) | 361, 397, 471, 490 |
| BmrFI | CCNGG | 1 cut(s) | 358 |
| BmrI | ACTGGG | 1 cut(s) | 415 |
| BmsI | GCATC | 1 cut(s) | 61 |
| BmuI | ACTGGG | 1 cut(s) | 415 |
| BpmI | CTGGAG | 2 cut(s) | 158, 263 |
| Bpu10I | CCTNAGC | 1 cut(s) | 483 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 132 |
| BpuMI | CCSGG | 1 cut(s) | 358 |
| BsaBI | GATNNNNATC | 1 cut(s) | 194 |
| BsaHI | GRCGYC | 1 cut(s) | 396 |
| BsaJI | CCNNGG | 2 cut(s) | 297, 357 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 405, 461 |
| Bse1I | ACTGG | 1 cut(s) | 410 |
| Bse8I | GATNNNNATC | 1 cut(s) | 194 |
| BseDI | CCNNGG | 2 cut(s) | 297, 357 |
| BseGI | GGATG | 2 cut(s) | 76, 288 |
| BseJI | GATNNNNATC | 1 cut(s) | 194 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 405, 461 |
| BseMII | CTCAG | 2 cut(s) | 146, 474 |
| BseNI | ACTGG | 1 cut(s) | 410 |
| BseRI | GAGGAG | 1 cut(s) | 289 |
| BseSI | GKGCMC | 1 cut(s) | 493 |
| BseXI | GCAGC | 3 cut(s) | 77, 144, 160 |
| BseYI | CCCAGC | 3 cut(s) | 258, 420, 428 |
| Bsh1236I | CGCG | 1 cut(s) | 227 |
| BshFI | GGCC | 4 cut(s) | 290, 356, 362, 433 |
| BshNI | GGYRCC | 2 cut(s) | 395, 488 |
| BsiHKCI | CYCGRG | 1 cut(s) | 455 |
| BsiSI | CCGG | 1 cut(s) | 357 |
| BslFI | GGGAC | 2 cut(s) | 119, 403 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 405, 461 |
| BsmFI | GGGAC | 2 cut(s) | 119, 403 |
| BsnI | GGCC | 4 cut(s) | 290, 356, 362, 433 |
| BsoBI | CYCGRG | 1 cut(s) | 455 |
| Bsp1286I | GDGCHC | 1 cut(s) | 493 |
| Bsp143I | GATC | 2 cut(s) | 163, 195 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 132 |
| Bsp19I | CCATGG | 1 cut(s) | 297 |
| BspANI | GGCC | 4 cut(s) | 290, 356, 362, 433 |
| BspCNI | CTCAG | 2 cut(s) | 145, 475 |
| BspFNI | CGCG | 1 cut(s) | 227 |
| BspLI | GGNNCC | 4 cut(s) | 361, 397, 471, 490 |
| BspPI | GGATC | 2 cut(s) | 171, 190 |
| BspT107I | GGYRCC | 2 cut(s) | 395, 488 |
| BsrBI | CCGCTC | 1 cut(s) | 115 |
| BsrI | ACTGG | 1 cut(s) | 410 |
| BssECI | CCNNGG | 2 cut(s) | 297, 357 |
| BssMI | GATC | 2 cut(s) | 163, 195 |
| BssNI | GRCGYC | 1 cut(s) | 396 |
| BssT1I | CCWWGG | 1 cut(s) | 297 |
| Bst4CI | ACNGT | 1 cut(s) | 125 |
| BstACI | GRCGYC | 1 cut(s) | 396 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 71 |
| BstC8I | GCNNGC | 5 cut(s) | 24, 76, 171, 426, 493 |
| BstDEI | CTNAG | 2 cut(s) | 132, 483 |
| BstDSI | CCRYGG | 1 cut(s) | 297 |
| BstF5I | GGATG | 2 cut(s) | 76, 288 |
| BstFNI | CGCG | 1 cut(s) | 227 |
| BstH2I | RGCGCY | 1 cut(s) | 399 |
| BstHHI | GCGC | 1 cut(s) | 398 |
| BstKTI | GATC | 2 cut(s) | 166, 198 |
| BstMBI | GATC | 2 cut(s) | 163, 195 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 71, 166, 224, 233, 302, 353, 430, 488 |
| BstSCI | CCNGG | 1 cut(s) | 356 |
| BstSLI | GKGCMC | 1 cut(s) | 493 |
| BstUI | CGCG | 1 cut(s) | 227 |
| BstV1I | GCAGC | 3 cut(s) | 77, 144, 160 |
| BstX2I | RGATCY | 1 cut(s) | 195 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 428 |
| BstYI | RGATCY | 1 cut(s) | 195 |
| BsuRI | GGCC | 4 cut(s) | 290, 356, 362, 433 |
| BtgI | CCRYGG | 1 cut(s) | 297 |
| BtsCI | GGATG | 2 cut(s) | 76, 288 |
| Cac8I | GCNNGC | 5 cut(s) | 24, 76, 171, 426, 493 |
| CfoI | GCGC | 1 cut(s) | 398 |
| Cfr13I | GGNCC | 2 cut(s) | 360, 431 |
| CseI | GACGC | 1 cut(s) | 71 |
| Csp6I | GTAC | 1 cut(s) | 325 |
| CviAII | CATG | 3 cut(s) | 148, 237, 298 |
| CviQI | GTAC | 1 cut(s) | 325 |
| DdeI | CTNAG | 2 cut(s) | 132, 483 |
| DinI | GGCGCC | 1 cut(s) | 397 |
| DpnI | GATC | 2 cut(s) | 165, 197 |
| DpnII | GATC | 2 cut(s) | 163, 195 |
| EciI | GGCGGA | 2 cut(s) | 41, 335 |
| Eco130I | CCWWGG | 1 cut(s) | 297 |
| Eco57I | CTGAAG | 1 cut(s) | 185 |
| Eco88I | CYCGRG | 1 cut(s) | 455 |
| EcoT14I | CCWWGG | 1 cut(s) | 297 |
| EgeI | GGCGCC | 1 cut(s) | 397 |
| EheI | GGCGCC | 1 cut(s) | 397 |
| ErhI | CCWWGG | 1 cut(s) | 297 |
| FaeI | CATG | 3 cut(s) | 151, 240, 301 |
| FaiI | YATR | 4 cut(s) | 149, 238, 299, 467 |
| FaqI | GGGAC | 2 cut(s) | 119, 403 |
| FatI | CATG | 3 cut(s) | 147, 236, 297 |
| FauI | CCCGC | 4 cut(s) | 96, 153, 255, 433 |
| Fnu4HI | GCNGC | 7 cut(s) | 66, 158, 174, 216, 291, 294, 348 |
| FokI | GGATG | 2 cut(s) | 83, 295 |
| Fsp4HI | GCNGC | 7 cut(s) | 66, 158, 174, 216, 291, 294, 348 |
| GlaI | GCGC | 1 cut(s) | 397 |
| GluI | GCNGC | 7 cut(s) | 66, 158, 174, 216, 291, 294, 348 |
| GsaI | CCCAGC | 3 cut(s) | 262, 424, 432 |
| GsuI | CTGGAG | 2 cut(s) | 158, 263 |
| HaeII | RGCGCY | 1 cut(s) | 399 |
| HaeIII | GGCC | 4 cut(s) | 290, 356, 362, 433 |
| HapII | CCGG | 1 cut(s) | 357 |
| HgaI | GACGC | 1 cut(s) | 71 |
| HhaI | GCGC | 1 cut(s) | 398 |
| Hin1I | GRCGYC | 1 cut(s) | 396 |
| Hin1II | CATG | 3 cut(s) | 151, 240, 301 |
| Hin6I | GCGC | 1 cut(s) | 396 |
| HinP1I | GCGC | 1 cut(s) | 396 |
| HincII | GTYRAC | 1 cut(s) | 45 |
| HindII | GTYRAC | 1 cut(s) | 45 |
| HinfI | GANTC | 1 cut(s) | 277 |
| HpaII | CCGG | 1 cut(s) | 357 |
| HphI | GGTGA | 1 cut(s) | 260 |
| Hpy166II | GTNNAC | 1 cut(s) | 45 |
| Hpy188I | TCNGA | 2 cut(s) | 282, 444 |
| Hpy188III | TCNNGA | 2 cut(s) | 184, 310 |
| Hpy8I | GTNNAC | 1 cut(s) | 45 |
| Hpy99I | CGWCG | 2 cut(s) | 98, 368 |
| HpyAV | CCTTC | 4 cut(s) | 172, 209, 325, 454 |
| HpyCH4III | ACNGT | 1 cut(s) | 125 |
| HpyCH4IV | ACGT | 1 cut(s) | 372 |
| HpyCH4V | TGCA | 1 cut(s) | 34 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 71, 166, 224, 233, 302, 353, 430, 488 |
| HpyF3I | CTNAG | 2 cut(s) | 132, 483 |
| HpySE526I | ACGT | 1 cut(s) | 372 |
| Hsp92I | GRCGYC | 1 cut(s) | 396 |
| Hsp92II | CATG | 3 cut(s) | 151, 240, 301 |
| HspAI | GCGC | 1 cut(s) | 396 |
| KasI | GGCGCC | 1 cut(s) | 395 |
| Kzo9I | GATC | 2 cut(s) | 163, 195 |
| LmnI | GCTCC | 1 cut(s) | 139 |
| Lsp1109I | GCAGC | 3 cut(s) | 77, 144, 160 |
| LweI | GCATC | 1 cut(s) | 61 |
| MaeII | ACGT | 1 cut(s) | 372 |
| MaeIII | GTNAC | 1 cut(s) | 59 |
| MalI | GATC | 2 cut(s) | 165, 197 |
| MbiI | CCGCTC | 1 cut(s) | 115 |
| MboI | GATC | 2 cut(s) | 163, 195 |
| MboII | GAAGA | 1 cut(s) | 199 |
| MflI | RGATCY | 1 cut(s) | 195 |
| MhlI | GDGCHC | 1 cut(s) | 493 |
| MluCI | AATT | 1 cut(s) | 221 |
| Mly113I | GGCGCC | 1 cut(s) | 396 |
| MlyI | GAGTC | 1 cut(s) | 286 |
| MmeI | TCCRAC | 1 cut(s) | 260 |
| MnlI | CCTC | 8 cut(s) | 22, 238, 244, 267, 280, 295, 337, 478 |
| MseI | TTAA | 1 cut(s) | 12 |
| MspA1I | CMGCKG | 8 cut(s) | 40, 68, 136, 169, 205, 262, 428, 495 |
| MspI | CCGG | 1 cut(s) | 357 |
| MspR9I | CCNGG | 1 cut(s) | 358 |
| MvnI | CGCG | 1 cut(s) | 227 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 71, 166, 224, 233, 302, 353, 430, 488 |
| NarI | GGCGCC | 1 cut(s) | 396 |
| NciI | CCSGG | 1 cut(s) | 358 |
| NcoI | CCATGG | 1 cut(s) | 297 |
| NdeII | GATC | 2 cut(s) | 163, 195 |
| NlaIII | CATG | 3 cut(s) | 151, 240, 301 |
| NlaIV | GGNNCC | 4 cut(s) | 361, 397, 471, 490 |
| NmuCI | GTSAC | 1 cut(s) | 59 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 405 |
| PkrI | GCNGC | 7 cut(s) | 67, 159, 175, 217, 292, 295, 349 |
| PleI | GAGTC | 1 cut(s) | 285 |
| PluTI | GGCGCC | 1 cut(s) | 399 |
| PpsI | GAGTC | 1 cut(s) | 285 |
| PspFI | CCCAGC | 3 cut(s) | 258, 420, 428 |
| PspN4I | GGNNCC | 4 cut(s) | 361, 397, 471, 490 |
| PspPI | GGNCC | 2 cut(s) | 360, 431 |
| PsuI | RGATCY | 1 cut(s) | 195 |
| PvuII | CAGCTG | 3 cut(s) | 136, 169, 205 |
| RsaI | GTAC | 1 cut(s) | 326 |
| RsaNI | GTAC | 1 cut(s) | 325 |
| SaqAI | TTAA | 1 cut(s) | 12 |
| SatI | GCNGC | 7 cut(s) | 66, 158, 174, 216, 291, 294, 348 |
| Sau3AI | GATC | 2 cut(s) | 163, 195 |
| Sau96I | GGNCC | 2 cut(s) | 360, 431 |
| SchI | GAGTC | 1 cut(s) | 286 |
| ScrFI | CCNGG | 1 cut(s) | 358 |
| SduI | GDGCHC | 1 cut(s) | 493 |
| SfaNI | GCATC | 1 cut(s) | 61 |
| SfoI | GGCGCC | 1 cut(s) | 397 |
| Sse9I | AATT | 1 cut(s) | 221 |
| SspDI | GGCGCC | 1 cut(s) | 395 |
| StyD4I | CCNGG | 1 cut(s) | 356 |
| StyI | CCWWGG | 1 cut(s) | 297 |
| TaaI | ACNGT | 1 cut(s) | 125 |
| TaiI | ACGT | 1 cut(s) | 375 |
| TasI | AATT | 1 cut(s) | 221 |
| TatI | WGTACW | 1 cut(s) | 324 |
| TauI | GCSGC | 4 cut(s) | 218, 293, 296, 350 |
| Tru1I | TTAA | 1 cut(s) | 12 |
| Tru9I | TTAA | 1 cut(s) | 12 |
| TseFI | GTSAC | 1 cut(s) | 59 |
| TseI | GCWGC | 3 cut(s) | 65, 157, 173 |
| Tsp45I | GTSAC | 1 cut(s) | 59 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 405 |
| XapI | RAATTY | 1 cut(s) | 221 |