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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 4 cut(s) | 16, 178, 627, 725 |
| AccI | GTMKAC | 1 cut(s) | 766 |
| AccII | CGCG | 4 cut(s) | 76, 389, 391, 797 |
| AclWI | GGATC | 1 cut(s) | 190 |
| AcoI | YGGCCR | 1 cut(s) | 307 |
| AcyI | GRCGYC | 3 cut(s) | 521, 657, 668 |
| AfaI | GTAC | 3 cut(s) | 323, 431, 733 |
| AfeI | AGCGCT | 1 cut(s) | 257 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 316, 517, 678, 685 |
| AgeI | ACCGGT | 1 cut(s) | 93 |
| AgsI | TTSAA | 2 cut(s) | 415, 608 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 747 |
| AluBI | AGCT | 1 cut(s) | 473 |
| AluI | AGCT | 1 cut(s) | 473 |
| Alw21I | GWGCWC | 1 cut(s) | 785 |
| Alw26I | GTCTC | 1 cut(s) | 734 |
| Alw44I | GTGCAC | 1 cut(s) | 781 |
| AlwI | GGATC | 1 cut(s) | 190 |
| Ama87I | CYCGRG | 2 cut(s) | 369, 720 |
| Aor51HI | AGCGCT | 1 cut(s) | 257 |
| AoxI | GGCC | 8 cut(s) | 58, 155, 307, 459, 465, 527, 711, 813 |
| ApaI | GGGCCC | 1 cut(s) | 469 |
| ApaLI | GTGCAC | 1 cut(s) | 781 |
| ApeKI | GCWGC | 3 cut(s) | 238, 280, 618 |
| AsiGI | ACCGGT | 1 cut(s) | 93 |
| AspLEI | GCGC | 5 cut(s) | 78, 258, 391, 393, 503 |
| AspS9I | GGNCC | 5 cut(s) | 384, 465, 466, 528, 712 |
| AsuC2I | CCSGG | 8 cut(s) | 170, 200, 331, 463, 512, 526, 661, 679 |
| AsuHPI | GGTGA | 6 cut(s) | 23, 353, 526, 592, 665, 818 |
| AsuNHI | GCTAGC | 1 cut(s) | 559 |
| AvaI | CYCGRG | 2 cut(s) | 369, 720 |
| AvaII | GGWCC | 1 cut(s) | 384 |
| BaeGI | GKGCMC | 2 cut(s) | 469, 785 |
| BalI | TGGCCA | 1 cut(s) | 309 |
| BanII | GRGCYC | 1 cut(s) | 469 |
| Bbv12I | GWGCWC | 1 cut(s) | 785 |
| BbvI | GCAGC | 3 cut(s) | 225, 267, 605 |
| BceAI | ACGGC | 5 cut(s) | 99, 387, 523, 723, 763 |
| BcnI | CCSGG | 8 cut(s) | 170, 200, 331, 463, 512, 526, 661, 679 |
| BcoDI | GTCTC | 1 cut(s) | 734 |
| BfaI | CTAG | 4 cut(s) | 47, 62, 470, 560 |
| BfoI | RGCGCY | 2 cut(s) | 259, 504 |
| Bme1390I | CCNGG | 8 cut(s) | 170, 200, 331, 463, 512, 526, 661, 679 |
| Bme18I | GGWCC | 1 cut(s) | 384 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 747 |
| BmeT110I | CYCGRG | 2 cut(s) | 369, 720 |
| BmgT120I | GGNCC | 5 cut(s) | 384, 465, 466, 528, 712 |
| BmiI | GGNNCC | 4 cut(s) | 135, 385, 466, 467 |
| BmrFI | CCNGG | 8 cut(s) | 170, 200, 331, 463, 512, 526, 661, 679 |
| BmsI | GCATC | 2 cut(s) | 267, 276 |
| BmtI | GCTAGC | 1 cut(s) | 563 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 625, 657 |
| BpmI | CTGGAG | 1 cut(s) | 263 |
| BpuMI | CCSGG | 8 cut(s) | 170, 200, 331, 463, 512, 526, 661, 679 |
| BsaHI | GRCGYC | 3 cut(s) | 521, 657, 668 |
| BsaJI | CCNNGG | 4 cut(s) | 168, 199, 462, 759 |
| BsaWI | WCCGGW | 1 cut(s) | 93 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 316, 517, 678, 685 |
| Bse118I | RCCGGY | 2 cut(s) | 93, 577 |
| BseDI | CCNNGG | 4 cut(s) | 168, 199, 462, 759 |
| BseGI | GGATG | 2 cut(s) | 291, 785 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 316, 517, 678, 685 |
| BsePI | GCGCGC | 1 cut(s) | 389 |
| BseRI | GAGGAG | 1 cut(s) | 206 |
| BseSI | GKGCMC | 2 cut(s) | 469, 785 |
| BseXI | GCAGC | 3 cut(s) | 225, 267, 605 |
| Bsh1236I | CGCG | 4 cut(s) | 76, 389, 391, 797 |
| Bsh1285I | CGRYCG | 3 cut(s) | 98, 422, 756 |
| BshFI | GGCC | 8 cut(s) | 60, 157, 309, 461, 467, 529, 713, 815 |
| BshTI | ACCGGT | 1 cut(s) | 93 |
| BsiEI | CGRYCG | 3 cut(s) | 98, 422, 756 |
| BsiHKAI | GWGCWC | 1 cut(s) | 785 |
| BsiHKCI | CYCGRG | 2 cut(s) | 369, 720 |
| BslFI | GGGAC | 4 cut(s) | 397, 508, 557, 676 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 316, 517, 678, 685 |
| BsmAI | GTCTC | 1 cut(s) | 734 |
| BsmFI | GGGAC | 4 cut(s) | 397, 508, 557, 676 |
| BsmI | GAATGC | 1 cut(s) | 410 |
| BsnI | GGCC | 8 cut(s) | 60, 157, 309, 461, 467, 529, 713, 815 |
| BsoBI | CYCGRG | 2 cut(s) | 369, 720 |
| Bsp120I | GGGCCC | 1 cut(s) | 465 |
| Bsp1286I | GDGCHC | 2 cut(s) | 469, 785 |
| Bsp143I | GATC | 1 cut(s) | 195 |
| BspANI | GGCC | 8 cut(s) | 60, 157, 309, 461, 467, 529, 713, 815 |
| BspFNI | CGCG | 4 cut(s) | 76, 389, 391, 797 |
| BspLI | GGNNCC | 4 cut(s) | 135, 385, 466, 467 |
| BspOI | GCTAGC | 1 cut(s) | 563 |
| BspPI | GGATC | 1 cut(s) | 190 |
| BsrBI | CCGCTC | 4 cut(s) | 16, 178, 627, 725 |
| BsrFI | RCCGGY | 2 cut(s) | 93, 577 |
| BssAI | RCCGGY | 2 cut(s) | 93, 577 |
| BssECI | CCNNGG | 4 cut(s) | 168, 199, 462, 759 |
| BssHII | GCGCGC | 1 cut(s) | 389 |
| BssMI | GATC | 1 cut(s) | 195 |
| BssNI | GRCGYC | 3 cut(s) | 521, 657, 668 |
| Bst4CI | ACNGT | 4 cut(s) | 11, 125, 420, 731 |
| Bst6I | CTCTTC | 2 cut(s) | 578, 804 |
| BstACI | GRCGYC | 3 cut(s) | 521, 657, 668 |
| BstC8I | GCNNGC | 6 cut(s) | 41, 391, 547, 561, 616, 799 |
| BstDEI | CTNAG | 2 cut(s) | 185, 746 |
| BstF5I | GGATG | 2 cut(s) | 291, 785 |
| BstFNI | CGCG | 4 cut(s) | 76, 389, 391, 797 |
| BstH2I | RGCGCY | 2 cut(s) | 259, 504 |
| BstHHI | GCGC | 5 cut(s) | 78, 258, 391, 393, 503 |
| BstKTI | GATC | 1 cut(s) | 198 |
| BstMAI | GTCTC | 1 cut(s) | 734 |
| BstMBI | GATC | 1 cut(s) | 195 |
| BstMCI | CGRYCG | 3 cut(s) | 98, 422, 756 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 286, 399, 458, 535, 624, 656 |
| BstSCI | CCNGG | 8 cut(s) | 168, 198, 329, 461, 510, 524, 659, 677 |
| BstSLI | GKGCMC | 2 cut(s) | 469, 785 |
| BstUI | CGCG | 4 cut(s) | 76, 389, 391, 797 |
| BstV1I | GCAGC | 3 cut(s) | 225, 267, 605 |
| BstX2I | RGATCY | 1 cut(s) | 195 |
| BstYI | RGATCY | 1 cut(s) | 195 |
| BsuRI | GGCC | 8 cut(s) | 60, 157, 309, 461, 467, 529, 713, 815 |
| BtgZI | GCGATG | 2 cut(s) | 290, 455 |
| BtsCI | GGATG | 2 cut(s) | 291, 785 |
| BtsIMutI | CAGTG | 1 cut(s) | 121 |
| Cac8I | GCNNGC | 6 cut(s) | 41, 391, 547, 561, 616, 799 |
| CfoI | GCGC | 5 cut(s) | 78, 258, 391, 393, 503 |
| Cfr10I | RCCGGY | 2 cut(s) | 93, 577 |
| Cfr13I | GGNCC | 5 cut(s) | 384, 465, 466, 528, 712 |
| CseI | GACGC | 3 cut(s) | 510, 665, 676 |
| Csp6I | GTAC | 3 cut(s) | 322, 430, 732 |
| CspAI | ACCGGT | 1 cut(s) | 93 |
| CviQI | GTAC | 3 cut(s) | 322, 430, 732 |
| DdeI | CTNAG | 2 cut(s) | 185, 746 |
| DpnI | GATC | 1 cut(s) | 197 |
| DpnII | GATC | 1 cut(s) | 195 |
| DriI | GACNNNNNGTC | 1 cut(s) | 747 |
| EaeI | YGGCCR | 1 cut(s) | 307 |
| Eam1104I | CTCTTC | 2 cut(s) | 578, 804 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 747 |
| EarI | CTCTTC | 2 cut(s) | 578, 804 |
| EciI | GGCGGA | 4 cut(s) | 284, 440, 679, 778 |
| Eco24I | GRGCYC | 1 cut(s) | 469 |
| Eco47I | GGWCC | 1 cut(s) | 384 |
| Eco47III | AGCGCT | 1 cut(s) | 257 |
| Eco88I | CYCGRG | 2 cut(s) | 369, 720 |
| EcoO109I | RGGNCCY | 2 cut(s) | 465, 466 |
| EcoT38I | GRGCYC | 1 cut(s) | 469 |
| FaqI | GGGAC | 4 cut(s) | 397, 508, 557, 676 |
| FauI | CCCGC | 6 cut(s) | 9, 171, 564, 582, 614, 643 |
| FblI | GTMKAC | 1 cut(s) | 766 |
| FokI | GGATG | 2 cut(s) | 298, 772 |
| FriOI | GRGCYC | 1 cut(s) | 469 |
| FspBI | CTAG | 4 cut(s) | 47, 62, 470, 560 |
| GlaI | GCGC | 5 cut(s) | 77, 257, 390, 392, 502 |
| GsuI | CTGGAG | 1 cut(s) | 263 |
| HaeII | RGCGCY | 2 cut(s) | 259, 504 |
| HaeIII | GGCC | 8 cut(s) | 60, 157, 309, 461, 467, 529, 713, 815 |
| HgaI | GACGC | 3 cut(s) | 510, 665, 676 |
| HhaI | GCGC | 5 cut(s) | 78, 258, 391, 393, 503 |
| Hin1I | GRCGYC | 3 cut(s) | 521, 657, 668 |
| Hin6I | GCGC | 5 cut(s) | 76, 256, 389, 391, 501 |
| HinP1I | GCGC | 5 cut(s) | 76, 256, 389, 391, 501 |
| HincII | GTYRAC | 2 cut(s) | 489, 767 |
| HindII | GTYRAC | 2 cut(s) | 489, 767 |
| HinfI | GANTC | 2 cut(s) | 634, 742 |
| HphI | GGTGA | 6 cut(s) | 23, 353, 526, 592, 665, 818 |
| Hpy166II | GTNNAC | 3 cut(s) | 489, 767, 783 |
| Hpy188I | TCNGA | 1 cut(s) | 753 |
| Hpy188III | TCNNGA | 1 cut(s) | 371 |
| Hpy8I | GTNNAC | 3 cut(s) | 489, 767, 783 |
| Hpy99I | CGWCG | 1 cut(s) | 85 |
| HpyCH4III | ACNGT | 4 cut(s) | 11, 125, 420, 731 |
| HpyCH4V | TGCA | 1 cut(s) | 783 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 286, 399, 458, 535, 624, 656 |
| HpyF3I | CTNAG | 2 cut(s) | 185, 746 |
| Hsp92I | GRCGYC | 3 cut(s) | 521, 657, 668 |
| HspAI | GCGC | 5 cut(s) | 76, 256, 389, 391, 501 |
| Kzo9I | GATC | 1 cut(s) | 195 |
| LmnI | GCTCC | 2 cut(s) | 139, 624 |
| Lsp1109I | GCAGC | 3 cut(s) | 225, 267, 605 |
| LweI | GCATC | 2 cut(s) | 267, 276 |
| MaeI | CTAG | 4 cut(s) | 47, 62, 470, 560 |
| MaeIII | GTNAC | 2 cut(s) | 119, 653 |
| MalI | GATC | 1 cut(s) | 197 |
| MbiI | CCGCTC | 4 cut(s) | 16, 178, 627, 725 |
| MboI | GATC | 1 cut(s) | 195 |
| MboII | GAAGA | 4 cut(s) | 356, 577, 595, 821 |
| MflI | RGATCY | 1 cut(s) | 195 |
| MhlI | GDGCHC | 2 cut(s) | 469, 785 |
| MlsI | TGGCCA | 1 cut(s) | 309 |
| MluNI | TGGCCA | 1 cut(s) | 309 |
| MlyI | GAGTC | 2 cut(s) | 643, 736 |
| MmeI | TCCRAC | 2 cut(s) | 663, 776 |
| Mox20I | TGGCCA | 1 cut(s) | 309 |
| MscI | TGGCCA | 1 cut(s) | 309 |
| Msp20I | TGGCCA | 1 cut(s) | 309 |
| MspR9I | CCNGG | 8 cut(s) | 170, 200, 331, 463, 512, 526, 661, 679 |
| Mva1269I | GAATGC | 1 cut(s) | 410 |
| MvnI | CGCG | 4 cut(s) | 76, 389, 391, 797 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 286, 399, 458, 535, 624, 656 |
| NciI | CCSGG | 8 cut(s) | 170, 200, 331, 463, 512, 526, 661, 679 |
| NdeII | GATC | 1 cut(s) | 195 |
| NheI | GCTAGC | 1 cut(s) | 559 |
| NlaIV | GGNNCC | 4 cut(s) | 135, 385, 466, 467 |
| NmeAIII | GCCGAG | 2 cut(s) | 89, 784 |
| NmuCI | GTSAC | 2 cut(s) | 119, 653 |
| PaeR7I | CTCGAG | 2 cut(s) | 369, 720 |
| PauI | GCGCGC | 1 cut(s) | 389 |
| PctI | GAATGC | 1 cut(s) | 410 |
| PinAI | ACCGGT | 1 cut(s) | 93 |
| PleI | GAGTC | 2 cut(s) | 642, 736 |
| PpsI | GAGTC | 2 cut(s) | 642, 736 |
| PspN4I | GGNNCC | 4 cut(s) | 135, 385, 466, 467 |
| PspOMI | GGGCCC | 1 cut(s) | 465 |
| PspPI | GGNCC | 5 cut(s) | 384, 465, 466, 528, 712 |
| PspXI | VCTCGAGB | 1 cut(s) | 720 |
| PsuI | RGATCY | 1 cut(s) | 195 |
| PteI | GCGCGC | 1 cut(s) | 389 |
| RsaI | GTAC | 3 cut(s) | 323, 431, 733 |
| RsaNI | GTAC | 3 cut(s) | 322, 430, 732 |
| SalI | GTCGAC | 1 cut(s) | 765 |
| Sau3AI | GATC | 1 cut(s) | 195 |
| Sau96I | GGNCC | 5 cut(s) | 384, 465, 466, 528, 712 |
| SchI | GAGTC | 2 cut(s) | 643, 736 |
| ScrFI | CCNGG | 8 cut(s) | 170, 200, 331, 463, 512, 526, 661, 679 |
| SduI | GDGCHC | 2 cut(s) | 469, 785 |
| SetI | ASST | 6 cut(s) | 249, 343, 475, 613, 690, 808 |
| SfaNI | GCATC | 2 cut(s) | 267, 276 |
| Sfr274I | CTCGAG | 2 cut(s) | 369, 720 |
| SgrAI | CRCCGGYG | 1 cut(s) | 577 |
| SinI | GGWCC | 1 cut(s) | 384 |
| SlaI | CTCGAG | 2 cut(s) | 369, 720 |
| SmlI | CTYRAG | 2 cut(s) | 369, 720 |
| SmoI | CTYRAG | 2 cut(s) | 369, 720 |
| SspMI | CTAG | 4 cut(s) | 47, 62, 470, 560 |
| StyD4I | CCNGG | 8 cut(s) | 168, 198, 329, 461, 510, 524, 659, 677 |
| TaaI | ACNGT | 4 cut(s) | 11, 125, 420, 731 |
| TaqI | TCGA | 4 cut(s) | 160, 370, 721, 766 |
| TaqII | GACCGA | 1 cut(s) | 107 |
| TatI | WGTACW | 1 cut(s) | 429 |
| TauI | GCSGC | 7 cut(s) | 60, 157, 402, 455, 713, 794, 797 |
| TscAI | CASTG | 1 cut(s) | 128 |
| TseFI | GTSAC | 2 cut(s) | 119, 653 |
| TseI | GCWGC | 3 cut(s) | 238, 280, 618 |
| Tsp45I | GTSAC | 2 cut(s) | 119, 653 |
| TspDTI | ATGAA | 2 cut(s) | 20, 458 |
| TspGWI | ACGGA | 1 cut(s) | 20 |
| TspRI | CASTG | 1 cut(s) | 128 |
| VneI | GTGCAC | 1 cut(s) | 781 |
| VpaK11BI | GGWCC | 1 cut(s) | 384 |
| XhoI | CTCGAG | 2 cut(s) | 369, 720 |
| XmiI | GTMKAC | 1 cut(s) | 766 |
| XspI | CTAG | 4 cut(s) | 47, 62, 470, 560 |