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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 232 |
| AccI | GTMKAC | 1 cut(s) | 423 |
| AccII | CGCG | 2 cut(s) | 135, 480 |
| AcoI | YGGCCR | 1 cut(s) | 24 |
| AcuI | CTGAAG | 1 cut(s) | 144 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 13, 58, 382 |
| AgsI | TTSAA | 3 cut(s) | 155, 163, 305 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 444 |
| AjnI | CCWGG | 2 cut(s) | 71, 402 |
| AluBI | AGCT | 1 cut(s) | 122 |
| AluI | AGCT | 1 cut(s) | 122 |
| Alw21I | GWGCWC | 1 cut(s) | 313 |
| Alw26I | GTCTC | 1 cut(s) | 431 |
| Ama87I | CYCGRG | 4 cut(s) | 227, 316, 417, 456 |
| AoxI | GGCC | 4 cut(s) | 24, 213, 288, 408 |
| ApaI | GGGCCC | 1 cut(s) | 217 |
| ApeKI | GCWGC | 1 cut(s) | 493 |
| AspLEI | GCGC | 2 cut(s) | 137, 482 |
| AspS9I | GGNCC | 5 cut(s) | 130, 213, 214, 289, 409 |
| AsuHPI | GGTGA | 3 cut(s) | 97, 113, 362 |
| AvaI | CYCGRG | 4 cut(s) | 227, 316, 417, 456 |
| AvaII | GGWCC | 1 cut(s) | 130 |
| BaeGI | GKGCMC | 1 cut(s) | 217 |
| BanI | GGYRCC | 1 cut(s) | 232 |
| BanII | GRGCYC | 1 cut(s) | 217 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 277, 309 |
| Bbv12I | GWGCWC | 1 cut(s) | 313 |
| BbvI | GCAGC | 1 cut(s) | 480 |
| BceAI | ACGGC | 2 cut(s) | 220, 442 |
| BciT130I | CCWGG | 2 cut(s) | 73, 404 |
| BcoDI | GTCTC | 1 cut(s) | 431 |
| BfaI | CTAG | 1 cut(s) | 218 |
| BfmI | CTRYAG | 1 cut(s) | 53 |
| BisI | GCNGC | 8 cut(s) | 27, 69, 147, 201, 408, 478, 491, 494 |
| BlsI | GCNGC | 8 cut(s) | 28, 70, 148, 202, 409, 479, 492, 495 |
| Bme1390I | CCNGG | 2 cut(s) | 73, 404 |
| Bme18I | GGWCC | 1 cut(s) | 130 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 444 |
| BmeT110I | CYCGRG | 4 cut(s) | 227, 316, 417, 456 |
| BmgT120I | GGNCC | 5 cut(s) | 130, 213, 214, 289, 409 |
| BmiI | GGNNCC | 5 cut(s) | 131, 214, 215, 234, 291 |
| BmrFI | CCNGG | 2 cut(s) | 73, 404 |
| BmrI | ACTGGG | 1 cut(s) | 370 |
| BmuI | ACTGGG | 1 cut(s) | 370 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 320, 352, 322, 354 |
| BpmI | CTGGAG | 1 cut(s) | 32 |
| Bsa29I | ATCGAT | 1 cut(s) | 45 |
| BsaBI | GATNNNNATC | 1 cut(s) | 47 |
| BsaJI | CCNNGG | 3 cut(s) | 30, 228, 457 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 13, 58, 382 |
| Bse118I | RCCGGY | 2 cut(s) | 274, 343 |
| Bse1I | ACTGG | 2 cut(s) | 99, 376 |
| Bse8I | GATNNNNATC | 1 cut(s) | 47 |
| BseBI | CCWGG | 2 cut(s) | 73, 404 |
| BseCI | ATCGAT | 1 cut(s) | 45 |
| BseDI | CCNNGG | 3 cut(s) | 30, 228, 457 |
| BseGI | GGATG | 1 cut(s) | 484 |
| BseJI | GATNNNNATC | 1 cut(s) | 47 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 13, 58, 382 |
| BseMII | CTCAG | 2 cut(s) | 107, 257 |
| BseNI | ACTGG | 2 cut(s) | 99, 376 |
| BseRI | GAGGAG | 2 cut(s) | 95, 357 |
| BseSI | GKGCMC | 1 cut(s) | 217 |
| BseXI | GCAGC | 1 cut(s) | 480 |
| BseYI | CCCAGC | 2 cut(s) | 209, 357 |
| BsgI | GTGCAG | 1 cut(s) | 479 |
| Bsh1236I | CGCG | 2 cut(s) | 135, 480 |
| Bsh1285I | CGRYCG | 1 cut(s) | 344 |
| BshFI | GGCC | 4 cut(s) | 26, 215, 290, 410 |
| BshNI | GGYRCC | 1 cut(s) | 232 |
| BshVI | ATCGAT | 1 cut(s) | 45 |
| BsiEI | CGRYCG | 1 cut(s) | 344 |
| BsiHKAI | GWGCWC | 1 cut(s) | 313 |
| BsiHKCI | CYCGRG | 4 cut(s) | 227, 316, 417, 456 |
| BsiSI | CCGG | 2 cut(s) | 275, 344 |
| BslFI | GGGAC | 3 cut(s) | 143, 254, 373 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 13, 58, 382 |
| BsmAI | GTCTC | 1 cut(s) | 431 |
| BsmFI | GGGAC | 3 cut(s) | 143, 254, 373 |
| BsmI | GAATGC | 2 cut(s) | 158, 190 |
| BsnI | GGCC | 4 cut(s) | 26, 215, 290, 410 |
| BsoBI | CYCGRG | 4 cut(s) | 227, 316, 417, 456 |
| Bsp120I | GGGCCC | 1 cut(s) | 213 |
| Bsp1286I | GDGCHC | 2 cut(s) | 217, 313 |
| Bsp143I | GATC | 1 cut(s) | 42 |
| BspANI | GGCC | 4 cut(s) | 26, 215, 290, 410 |
| BspCNI | CTCAG | 2 cut(s) | 108, 256 |
| BspDI | ATCGAT | 1 cut(s) | 45 |
| BspFNI | CGCG | 2 cut(s) | 135, 480 |
| BspLI | GGNNCC | 5 cut(s) | 131, 214, 215, 234, 291 |
| BspT107I | GGYRCC | 1 cut(s) | 232 |
| BsrFI | RCCGGY | 2 cut(s) | 274, 343 |
| BsrI | ACTGG | 2 cut(s) | 99, 376 |
| BssAI | RCCGGY | 2 cut(s) | 274, 343 |
| BssECI | CCNNGG | 3 cut(s) | 30, 228, 457 |
| BssMI | GATC | 1 cut(s) | 42 |
| BssT1I | CCWWGG | 1 cut(s) | 30 |
| Bst2UI | CCWGG | 2 cut(s) | 73, 404 |
| Bst4CI | ACNGT | 1 cut(s) | 168 |
| Bst6I | CTCTTC | 2 cut(s) | 275, 504 |
| BstC8I | GCNNGC | 5 cut(s) | 112, 258, 276, 313, 498 |
| BstDEI | CTNAG | 2 cut(s) | 116, 243 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 11 |
| BstF5I | GGATG | 1 cut(s) | 484 |
| BstFNI | CGCG | 2 cut(s) | 135, 480 |
| BstHHI | GCGC | 2 cut(s) | 137, 482 |
| BstKTI | GATC | 1 cut(s) | 45 |
| BstMAI | GTCTC | 1 cut(s) | 431 |
| BstMBI | GATC | 1 cut(s) | 42 |
| BstMCI | CGRYCG | 1 cut(s) | 344 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 143, 155, 206 |
| BstNI | CCWGG | 2 cut(s) | 73, 404 |
| BstSCI | CCNGG | 2 cut(s) | 71, 402 |
| BstSFI | CTRYAG | 1 cut(s) | 53 |
| BstSLI | GKGCMC | 1 cut(s) | 217 |
| BstUI | CGCG | 2 cut(s) | 135, 480 |
| BstV1I | GCAGC | 1 cut(s) | 480 |
| Bsu15I | ATCGAT | 1 cut(s) | 45 |
| BsuRI | GGCC | 4 cut(s) | 26, 215, 290, 410 |
| BsuTUI | ATCGAT | 1 cut(s) | 45 |
| BtgZI | GCGATG | 1 cut(s) | 203 |
| BtsCI | GGATG | 1 cut(s) | 484 |
| Cac8I | GCNNGC | 5 cut(s) | 112, 258, 276, 313, 498 |
| CfoI | GCGC | 2 cut(s) | 137, 482 |
| Cfr10I | RCCGGY | 2 cut(s) | 274, 343 |
| Cfr13I | GGNCC | 5 cut(s) | 130, 213, 214, 289, 409 |
| ClaI | ATCGAT | 1 cut(s) | 45 |
| DdeI | CTNAG | 2 cut(s) | 116, 243 |
| DpnI | GATC | 1 cut(s) | 44 |
| DpnII | GATC | 1 cut(s) | 42 |
| DriI | GACNNNNNGTC | 1 cut(s) | 444 |
| EaeI | YGGCCR | 1 cut(s) | 24 |
| Eam1104I | CTCTTC | 2 cut(s) | 275, 504 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 444 |
| EarI | CTCTTC | 2 cut(s) | 275, 504 |
| EciI | GGCGGA | 2 cut(s) | 188, 477 |
| Eco130I | CCWWGG | 1 cut(s) | 30 |
| Eco24I | GRGCYC | 1 cut(s) | 217 |
| Eco32I | GATATC | 1 cut(s) | 49 |
| Eco47I | GGWCC | 1 cut(s) | 130 |
| Eco57I | CTGAAG | 1 cut(s) | 144 |
| Eco88I | CYCGRG | 4 cut(s) | 227, 316, 417, 456 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 11 |
| EcoO109I | RGGNCCY | 2 cut(s) | 213, 214 |
| EcoRII | CCWGG | 2 cut(s) | 71, 402 |
| EcoRV | GATATC | 1 cut(s) | 49 |
| EcoT14I | CCWWGG | 1 cut(s) | 30 |
| EcoT38I | GRGCYC | 1 cut(s) | 217 |
| ErhI | CCWWGG | 1 cut(s) | 30 |
| FaiI | YATR | 3 cut(s) | 140, 180, 287 |
| FaqI | GGGAC | 3 cut(s) | 143, 254, 373 |
| FauI | CCCGC | 5 cut(s) | 51, 119, 261, 279, 340 |
| FblI | GTMKAC | 1 cut(s) | 423 |
| Fnu4HI | GCNGC | 8 cut(s) | 27, 69, 147, 201, 408, 478, 491, 494 |
| FokI | GGATG | 1 cut(s) | 471 |
| FriOI | GRGCYC | 1 cut(s) | 217 |
| Fsp4HI | GCNGC | 8 cut(s) | 27, 69, 147, 201, 408, 478, 491, 494 |
| FspBI | CTAG | 1 cut(s) | 218 |
| GlaI | GCGC | 2 cut(s) | 136, 481 |
| GluI | GCNGC | 8 cut(s) | 27, 69, 147, 201, 408, 478, 491, 494 |
| GsaI | CCCAGC | 2 cut(s) | 213, 361 |
| GsuI | CTGGAG | 1 cut(s) | 32 |
| HaeIII | GGCC | 4 cut(s) | 26, 215, 290, 410 |
| HapII | CCGG | 2 cut(s) | 275, 344 |
| HhaI | GCGC | 2 cut(s) | 137, 482 |
| Hin6I | GCGC | 2 cut(s) | 135, 480 |
| HinP1I | GCGC | 2 cut(s) | 135, 480 |
| HinfI | GANTC | 4 cut(s) | 62, 353, 364, 439 |
| HpaII | CCGG | 2 cut(s) | 275, 344 |
| HphI | GGTGA | 3 cut(s) | 97, 113, 362 |
| Hpy166II | GTNNAC | 1 cut(s) | 424 |
| Hpy188I | TCNGA | 3 cut(s) | 246, 382, 466 |
| Hpy188III | TCNNGA | 2 cut(s) | 227, 339 |
| Hpy8I | GTNNAC | 1 cut(s) | 424 |
| HpyAV | CCTTC | 5 cut(s) | 92, 119, 199, 299, 303 |
| HpyCH4III | ACNGT | 1 cut(s) | 168 |
| HpyCH4V | TGCA | 1 cut(s) | 496 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 143, 155, 206 |
| HpyF3I | CTNAG | 2 cut(s) | 116, 243 |
| HspAI | GCGC | 2 cut(s) | 135, 480 |
| KroI | GCCGGC | 1 cut(s) | 274 |
| KroNI | GCCGGC | 1 cut(s) | 276 |
| Kzo9I | GATC | 1 cut(s) | 42 |
| Lsp1109I | GCAGC | 1 cut(s) | 480 |
| MaeI | CTAG | 1 cut(s) | 218 |
| MaeIII | GTNAC | 1 cut(s) | 350 |
| MalI | GATC | 1 cut(s) | 44 |
| MboI | GATC | 1 cut(s) | 42 |
| MboII | GAAGA | 3 cut(s) | 100, 292, 521 |
| MhlI | GDGCHC | 2 cut(s) | 217, 313 |
| MlyI | GAGTC | 4 cut(s) | 71, 347, 358, 433 |
| MmeI | TCCRAC | 2 cut(s) | 360, 473 |
| MnlI | CCTC | 9 cut(s) | 7, 73, 76, 190, 223, 376, 378, 452, 505 |
| MreI | CGCCGGCG | 1 cut(s) | 274 |
| MroNI | GCCGGC | 1 cut(s) | 274 |
| MspA1I | CMGCKG | 4 cut(s) | 58, 149, 361, 493 |
| MspI | CCGG | 2 cut(s) | 275, 344 |
| MspR9I | CCNGG | 2 cut(s) | 73, 404 |
| Mva1269I | GAATGC | 2 cut(s) | 158, 190 |
| MvaI | CCWGG | 2 cut(s) | 73, 404 |
| MvnI | CGCG | 2 cut(s) | 135, 480 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 143, 155, 206 |
| NaeI | GCCGGC | 1 cut(s) | 276 |
| NdeII | GATC | 1 cut(s) | 42 |
| NgoMIV | GCCGGC | 1 cut(s) | 274 |
| NlaIV | GGNNCC | 5 cut(s) | 131, 214, 215, 234, 291 |
| NmuCI | GTSAC | 1 cut(s) | 350 |
| PaeR7I | CTCGAG | 1 cut(s) | 417 |
| PctI | GAATGC | 2 cut(s) | 158, 190 |
| PdiI | GCCGGC | 1 cut(s) | 276 |
| PkrI | GCNGC | 8 cut(s) | 28, 70, 148, 202, 409, 479, 492, 495 |
| PleI | GAGTC | 4 cut(s) | 70, 347, 358, 433 |
| PpsI | GAGTC | 4 cut(s) | 70, 347, 358, 433 |
| Psp6I | CCWGG | 2 cut(s) | 71, 402 |
| PspFI | CCCAGC | 2 cut(s) | 209, 357 |
| PspGI | CCWGG | 2 cut(s) | 71, 402 |
| PspN4I | GGNNCC | 5 cut(s) | 131, 214, 215, 234, 291 |
| PspOMI | GGGCCC | 1 cut(s) | 213 |
| PspPI | GGNCC | 5 cut(s) | 130, 213, 214, 289, 409 |
| PspXI | VCTCGAGB | 1 cut(s) | 417 |
| SatI | GCNGC | 8 cut(s) | 27, 69, 147, 201, 408, 478, 491, 494 |
| Sau3AI | GATC | 1 cut(s) | 42 |
| Sau96I | GGNCC | 5 cut(s) | 130, 213, 214, 289, 409 |
| SchI | GAGTC | 4 cut(s) | 71, 347, 358, 433 |
| ScrFI | CCNGG | 2 cut(s) | 73, 404 |
| SduI | GDGCHC | 2 cut(s) | 217, 313 |
| SetI | ASST | 6 cut(s) | 87, 103, 124, 234, 310, 387 |
| SfcI | CTRYAG | 1 cut(s) | 53 |
| Sfr274I | CTCGAG | 1 cut(s) | 417 |
| SgrAI | CRCCGGYG | 1 cut(s) | 274 |
| SinI | GGWCC | 1 cut(s) | 130 |
| SlaI | CTCGAG | 1 cut(s) | 417 |
| SmlI | CTYRAG | 1 cut(s) | 417 |
| SmoI | CTYRAG | 1 cut(s) | 417 |
| SspMI | CTAG | 1 cut(s) | 218 |
| StyD4I | CCNGG | 2 cut(s) | 71, 402 |
| StyI | CCWWGG | 1 cut(s) | 30 |
| TaaI | ACNGT | 1 cut(s) | 168 |
| TaqI | TCGA | 3 cut(s) | 45, 340, 418 |
| TauI | GCSGC | 7 cut(s) | 29, 71, 149, 203, 410, 480, 493 |
| TseFI | GTSAC | 1 cut(s) | 350 |
| TseI | GCWGC | 1 cut(s) | 493 |
| Tsp45I | GTSAC | 1 cut(s) | 350 |
| TspDTI | ATGAA | 1 cut(s) | 206 |
| VpaK11BI | GGWCC | 1 cut(s) | 130 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 11 |
| XhoI | CTCGAG | 1 cut(s) | 417 |
| XmiI | GTMKAC | 1 cut(s) | 423 |
| XspI | CTAG | 1 cut(s) | 218 |