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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 209, 816 |
| AccB1I | GGYRCC | 2 cut(s) | 915, 1458 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 24, 107 |
| AccBSI | CCGCTC | 1 cut(s) | 1574 |
| AccI | GTMKAC | 4 cut(s) | 300, 550, 702, 1322 |
| AccII | CGCG | 4 cut(s) | 475, 636, 674, 676 |
| AclWI | GGATC | 1 cut(s) | 509 |
| AcoI | YGGCCR | 3 cut(s) | 681, 817, 1557 |
| AcsI | RAATTY | 3 cut(s) | 54, 112, 1536 |
| AcuI | CTGAAG | 2 cut(s) | 93, 985 |
| AcvI | CACGTG | 1 cut(s) | 493 |
| AcyI | GRCGYC | 3 cut(s) | 206, 813, 1025 |
| AfaI | GTAC | 4 cut(s) | 227, 237, 1424, 1582 |
| AfeI | AGCGCT | 1 cut(s) | 879 |
| AflIII | ACRYGT | 2 cut(s) | 20, 339 |
| AgeI | ACCGGT | 1 cut(s) | 130 |
| AgsI | TTSAA | 8 cut(s) | 149, 290, 466, 557, 659, 800, 1408, 1529 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1628 |
| AjiI | CACGTC | 2 cut(s) | 568, 1164 |
| AjnI | CCWGG | 1 cut(s) | 106 |
| AluBI | AGCT | 6 cut(s) | 626, 1150, 1225, 1246, 1351, 1510 |
| AluI | AGCT | 6 cut(s) | 626, 1150, 1225, 1246, 1351, 1510 |
| Alw21I | GWGCWC | 1 cut(s) | 1152 |
| Alw26I | GTCTC | 2 cut(s) | 731, 1051 |
| AlwI | GGATC | 1 cut(s) | 509 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 937, 1192 |
| Ama87I | CYCGRG | 1 cut(s) | 1176 |
| Aor51HI | AGCGCT | 1 cut(s) | 879 |
| ApeKI | GCWGC | 6 cut(s) | 376, 586, 862, 1186, 1471, 1647 |
| ApoI | RAATTY | 3 cut(s) | 54, 112, 1536 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 34, 66, 196, 228, 416, 448 |
| AsiGI | ACCGGT | 1 cut(s) | 130 |
| AspLEI | GCGC | 6 cut(s) | 638, 676, 760, 779, 880, 1263 |
| AsuC2I | CCSGG | 2 cut(s) | 591, 1670 |
| AsuHPI | GGTGA | 6 cut(s) | 256, 733, 761, 966, 1342, 1669 |
| AvaI | CYCGRG | 1 cut(s) | 1176 |
| AvaII | GGWCC | 6 cut(s) | 384, 631, 1204, 1660, 1696, 1706 |
| BaeGI | GKGCMC | 1 cut(s) | 920 |
| BanI | GGYRCC | 2 cut(s) | 915, 1458 |
| BanII | GRGCYC | 2 cut(s) | 1152, 1601 |
| BbrPI | CACGTG | 1 cut(s) | 493 |
| Bbv12I | GWGCWC | 1 cut(s) | 1152 |
| BbvI | GCAGC | 6 cut(s) | 363, 573, 874, 1198, 1483, 1659 |
| BccI | CCATC | 7 cut(s) | 13, 83, 114, 349, 422, 1069, 1084 |
| BceAI | ACGGC | 4 cut(s) | 215, 421, 1318, 1613 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 348, 382, 652, 686 |
| BciT130I | CCWGG | 1 cut(s) | 108 |
| BclI | TGATCA | 1 cut(s) | 1617 |
| BcnI | CCSGG | 2 cut(s) | 591, 1670 |
| BcoDI | GTCTC | 2 cut(s) | 731, 1051 |
| BfaI | CTAG | 2 cut(s) | 1292, 1340 |
| BfmI | CTRYAG | 2 cut(s) | 94, 1214 |
| BfoI | RGCGCY | 3 cut(s) | 780, 881, 1264 |
| BglII | AGATCT | 1 cut(s) | 539 |
| BlpI | GCTNAGC | 1 cut(s) | 1368 |
| Bme1390I | CCNGG | 3 cut(s) | 108, 591, 1670 |
| Bme18I | GGWCC | 6 cut(s) | 384, 631, 1204, 1660, 1696, 1706 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1628 |
| BmeT110I | CYCGRG | 1 cut(s) | 1176 |
| BmgBI | CACGTC | 2 cut(s) | 568, 1164 |
| BmrFI | CCNGG | 3 cut(s) | 108, 591, 1670 |
| BmsI | GCATC | 2 cut(s) | 267, 1285 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1129 |
| BpmI | CTGGAG | 1 cut(s) | 1382 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1368 |
| BpuMI | CCSGG | 2 cut(s) | 591, 1670 |
| BsaAI | YACGTR | 1 cut(s) | 493 |
| BsaHI | GRCGYC | 3 cut(s) | 206, 813, 1025 |
| BsaI | GGTCTC | 1 cut(s) | 1051 |
| BsaJI | CCNNGG | 9 cut(s) | 106, 107, 256, 772, 792, 1175, 1207, 1272, 1668 |
| BsaWI | WCCGGW | 2 cut(s) | 130, 739 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 470, 500, 899, 929 |
| Bse118I | RCCGGY | 2 cut(s) | 130, 217 |
| Bse1I | ACTGG | 3 cut(s) | 603, 720, 931 |
| BseBI | CCWGG | 1 cut(s) | 108 |
| BseDI | CCNNGG | 9 cut(s) | 106, 107, 256, 772, 792, 1175, 1207, 1272, 1668 |
| BseGI | GGATG | 4 cut(s) | 94, 168, 1095, 1258 |
| BseMII | CTCAG | 7 cut(s) | 527, 744, 967, 1184, 1301, 1359, 1520 |
| BseNI | ACTGG | 3 cut(s) | 603, 720, 931 |
| BseRI | GAGGAG | 2 cut(s) | 494, 1214 |
| BseSI | GKGCMC | 1 cut(s) | 920 |
| BseXI | GCAGC | 6 cut(s) | 363, 573, 874, 1198, 1483, 1659 |
| BseYI | CCCAGC | 3 cut(s) | 221, 1225, 1454 |
| Bsh1236I | CGCG | 4 cut(s) | 475, 636, 674, 676 |
| Bsh1285I | CGRYCG | 1 cut(s) | 135 |
| BshNI | GGYRCC | 2 cut(s) | 915, 1458 |
| BshTI | ACCGGT | 1 cut(s) | 130 |
| BsiEI | CGRYCG | 1 cut(s) | 135 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1152 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1176 |
| BsiSI | CCGG | 6 cut(s) | 131, 218, 590, 740, 1496, 1670 |
| BslFI | GGGAC | 2 cut(s) | 1107, 1673 |
| BsmAI | GTCTC | 2 cut(s) | 731, 1051 |
| BsmFI | GGGAC | 2 cut(s) | 1107, 1673 |
| BsmI | GAATGC | 1 cut(s) | 580 |
| Bso31I | GGTCTC | 1 cut(s) | 1051 |
| BsoBI | CYCGRG | 1 cut(s) | 1176 |
| Bsp1286I | GDGCHC | 3 cut(s) | 920, 1152, 1601 |
| Bsp143I | GATC | 3 cut(s) | 501, 539, 1617 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1368 |
| BspCNI | CTCAG | 7 cut(s) | 528, 743, 966, 1185, 1302, 1360, 1519 |
| BspFNI | CGCG | 4 cut(s) | 475, 636, 674, 676 |
| BspMAI | CTGCAG | 1 cut(s) | 1218 |
| BspPI | GGATC | 1 cut(s) | 509 |
| BspQI | GCTCTTC | 1 cut(s) | 1157 |
| BspT107I | GGYRCC | 2 cut(s) | 915, 1458 |
| BspTNI | GGTCTC | 1 cut(s) | 1051 |
| BsrBI | CCGCTC | 1 cut(s) | 1574 |
| BsrFI | RCCGGY | 2 cut(s) | 130, 217 |
| BsrI | ACTGG | 3 cut(s) | 603, 720, 931 |
| BssAI | RCCGGY | 2 cut(s) | 130, 217 |
| BssECI | CCNNGG | 9 cut(s) | 106, 107, 256, 772, 792, 1175, 1207, 1272, 1668 |
| BssMI | GATC | 3 cut(s) | 501, 539, 1617 |
| BssNAI | GTATAC | 1 cut(s) | 301 |
| BssNI | GRCGYC | 3 cut(s) | 206, 813, 1025 |
| BssT1I | CCWWGG | 4 cut(s) | 256, 772, 1207, 1272 |
| Bst1107I | GTATAC | 1 cut(s) | 301 |
| Bst2UI | CCWGG | 1 cut(s) | 108 |
| Bst4CI | ACNGT | 5 cut(s) | 85, 392, 700, 939, 1396 |
| Bst6I | CTCTTC | 3 cut(s) | 1157, 1328, 1471 |
| BstACI | GRCGYC | 3 cut(s) | 206, 813, 1025 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 586 |
| BstBAI | YACGTR | 1 cut(s) | 493 |
| BstDEI | CTNAG | 9 cut(s) | 536, 730, 953, 1007, 1193, 1310, 1368, 1506, 1713 |
| BstDSI | CCRYGG | 1 cut(s) | 792 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1271 |
| BstF5I | GGATG | 4 cut(s) | 94, 168, 1095, 1258 |
| BstFNI | CGCG | 4 cut(s) | 475, 636, 674, 676 |
| BstH2I | RGCGCY | 3 cut(s) | 780, 881, 1264 |
| BstHHI | GCGC | 6 cut(s) | 638, 676, 760, 779, 880, 1263 |
| BstKTI | GATC | 3 cut(s) | 504, 542, 1620 |
| BstMAI | GTCTC | 2 cut(s) | 731, 1051 |
| BstMBI | GATC | 3 cut(s) | 501, 539, 1617 |
| BstMCI | CGRYCG | 1 cut(s) | 135 |
| BstNI | CCWGG | 1 cut(s) | 108 |
| BstNSI | RCATGY | 5 cut(s) | 24, 343, 667, 671, 973 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1129 |
| BstSCI | CCNGG | 3 cut(s) | 106, 589, 1668 |
| BstSFI | CTRYAG | 2 cut(s) | 94, 1214 |
| BstSLI | GKGCMC | 1 cut(s) | 920 |
| BstUI | CGCG | 4 cut(s) | 475, 636, 674, 676 |
| BstV1I | GCAGC | 6 cut(s) | 363, 573, 874, 1198, 1483, 1659 |
| BstX2I | RGATCY | 1 cut(s) | 539 |
| BstYI | RGATCY | 1 cut(s) | 539 |
| BstZ17I | GTATAC | 1 cut(s) | 301 |
| BtgI | CCRYGG | 1 cut(s) | 792 |
| BtgZI | GCGATG | 1 cut(s) | 133 |
| BtrI | CACGTC | 2 cut(s) | 568, 1164 |
| BtsCI | GGATG | 4 cut(s) | 94, 168, 1095, 1258 |
| BtsI | GCAGTG | 2 cut(s) | 491, 1379 |
| BtsIMutI | CAGTG | 7 cut(s) | 90, 272, 359, 491, 713, 1379, 1392 |
| CaiI | CAGNNNCTG | 2 cut(s) | 937, 1192 |
| CfoI | GCGC | 6 cut(s) | 638, 676, 760, 779, 880, 1263 |
| Cfr10I | RCCGGY | 2 cut(s) | 130, 217 |
| CseI | GACGC | 3 cut(s) | 481, 1033, 1478 |
| Csp6I | GTAC | 4 cut(s) | 226, 236, 1423, 1581 |
| CspAI | ACCGGT | 1 cut(s) | 130 |
| CviQI | GTAC | 4 cut(s) | 226, 236, 1423, 1581 |
| DdeI | CTNAG | 9 cut(s) | 536, 730, 953, 1007, 1193, 1310, 1368, 1506, 1713 |
| DpnI | GATC | 3 cut(s) | 503, 541, 1619 |
| DpnII | GATC | 3 cut(s) | 501, 539, 1617 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1628 |
| EaeI | YGGCCR | 3 cut(s) | 681, 817, 1557 |
| Eam1104I | CTCTTC | 3 cut(s) | 1157, 1328, 1471 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1628 |
| EarI | CTCTTC | 3 cut(s) | 1157, 1328, 1471 |
| EciI | GGCGGA | 3 cut(s) | 411, 1265, 1292 |
| Ecl136II | GAGCTC | 1 cut(s) | 1150 |
| Eco130I | CCWWGG | 4 cut(s) | 256, 772, 1207, 1272 |
| Eco147I | AGGCCT | 1 cut(s) | 456 |
| Eco24I | GRGCYC | 2 cut(s) | 1152, 1601 |
| Eco31I | GGTCTC | 1 cut(s) | 1051 |
| Eco47I | GGWCC | 6 cut(s) | 384, 631, 1204, 1660, 1696, 1706 |
| Eco47III | AGCGCT | 1 cut(s) | 879 |
| Eco53kI | GAGCTC | 1 cut(s) | 1150 |
| Eco57I | CTGAAG | 2 cut(s) | 93, 985 |
| Eco72I | CACGTG | 1 cut(s) | 493 |
| Eco88I | CYCGRG | 1 cut(s) | 1176 |
| EcoICRI | GAGCTC | 1 cut(s) | 1150 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1271 |
| EcoO109I | RGGNCCY | 2 cut(s) | 844, 1660 |
| EcoRI | GAATTC | 1 cut(s) | 54 |
| EcoRII | CCWGG | 1 cut(s) | 106 |
| EcoT14I | CCWWGG | 4 cut(s) | 256, 772, 1207, 1272 |
| EcoT22I | ATGCAT | 1 cut(s) | 669 |
| EcoT38I | GRGCYC | 2 cut(s) | 1152, 1601 |
| ErhI | CCWWGG | 4 cut(s) | 256, 772, 1207, 1272 |
| FaqI | GGGAC | 2 cut(s) | 1107, 1673 |
| FauI | CCCGC | 6 cut(s) | 181, 409, 468, 714, 1671, 1695 |
| FbaI | TGATCA | 1 cut(s) | 1617 |
| FblI | GTMKAC | 4 cut(s) | 300, 550, 702, 1322 |
| FokI | GGATG | 4 cut(s) | 101, 175, 1102, 1265 |
| FriOI | GRGCYC | 2 cut(s) | 1152, 1601 |
| FspBI | CTAG | 2 cut(s) | 1292, 1340 |
| GlaI | GCGC | 6 cut(s) | 637, 675, 759, 778, 879, 1262 |
| GsaI | CCCAGC | 3 cut(s) | 225, 1229, 1458 |
| GsuI | CTGGAG | 1 cut(s) | 1382 |
| HaeII | RGCGCY | 3 cut(s) | 780, 881, 1264 |
| HapII | CCGG | 6 cut(s) | 131, 218, 590, 740, 1496, 1670 |
| HgaI | GACGC | 3 cut(s) | 481, 1033, 1478 |
| HhaI | GCGC | 6 cut(s) | 638, 676, 760, 779, 880, 1263 |
| Hin1I | GRCGYC | 3 cut(s) | 206, 813, 1025 |
| Hin6I | GCGC | 6 cut(s) | 636, 674, 758, 777, 878, 1261 |
| HinP1I | GCGC | 6 cut(s) | 636, 674, 758, 777, 878, 1261 |
| HincII | GTYRAC | 2 cut(s) | 551, 703 |
| HindII | GTYRAC | 2 cut(s) | 551, 703 |
| HinfI | GANTC | 6 cut(s) | 77, 724, 1095, 1286, 1502, 1513 |
| HpaII | CCGG | 6 cut(s) | 131, 218, 590, 740, 1496, 1670 |
| HphI | GGTGA | 6 cut(s) | 256, 733, 761, 966, 1342, 1669 |
| Hpy166II | GTNNAC | 5 cut(s) | 301, 551, 703, 1323, 1709 |
| Hpy188I | TCNGA | 8 cut(s) | 73, 733, 956, 1004, 1534, 1617, 1622, 1690 |
| Hpy188III | TCNNGA | 3 cut(s) | 139, 149, 1361 |
| Hpy8I | GTNNAC | 5 cut(s) | 301, 551, 703, 1323, 1709 |
| Hpy99I | CGWCG | 4 cut(s) | 236, 572, 704, 818 |
| HpyAV | CCTTC | 8 cut(s) | 296, 653, 862, 898, 918, 1435, 1444, 1530 |
| HpyCH4III | ACNGT | 5 cut(s) | 85, 392, 700, 939, 1396 |
| HpyCH4IV | ACGT | 5 cut(s) | 206, 492, 567, 813, 1163 |
| HpyCH4V | TGCA | 4 cut(s) | 379, 667, 862, 1216 |
| HpyF3I | CTNAG | 9 cut(s) | 536, 730, 953, 1007, 1193, 1310, 1368, 1506, 1713 |
| HpySE526I | ACGT | 5 cut(s) | 206, 492, 567, 813, 1163 |
| Hsp92I | GRCGYC | 3 cut(s) | 206, 813, 1025 |
| HspAI | GCGC | 6 cut(s) | 636, 674, 758, 777, 878, 1261 |
| KflI | GGGWCCC | 1 cut(s) | 1660 |
| KroI | GCCGGC | 1 cut(s) | 217 |
| KroNI | GCCGGC | 1 cut(s) | 219 |
| Ksp22I | TGATCA | 1 cut(s) | 1617 |
| Kzo9I | GATC | 3 cut(s) | 501, 539, 1617 |
| LguI | GCTCTTC | 1 cut(s) | 1157 |
| LmnI | GCTCC | 2 cut(s) | 481, 1222 |
| Lsp1109I | GCAGC | 6 cut(s) | 363, 573, 874, 1198, 1483, 1659 |
| LweI | GCATC | 2 cut(s) | 267, 1285 |
| MaeI | CTAG | 2 cut(s) | 1292, 1340 |
| MaeII | ACGT | 5 cut(s) | 206, 492, 567, 813, 1163 |
| MaeIII | GTNAC | 7 cut(s) | 165, 262, 805, 933, 972, 1013, 1588 |
| MalI | GATC | 3 cut(s) | 503, 541, 1619 |
| MbiI | CCGCTC | 1 cut(s) | 1574 |
| MboI | GATC | 3 cut(s) | 501, 539, 1617 |
| MboII | GAAGA | 6 cut(s) | 86, 1048, 1092, 1144, 1345, 1488 |
| MflI | RGATCY | 1 cut(s) | 539 |
| MhlI | GDGCHC | 3 cut(s) | 920, 1152, 1601 |
| MluCI | AATT | 4 cut(s) | 54, 112, 1047, 1536 |
| MlyI | GAGTC | 4 cut(s) | 733, 1089, 1280, 1507 |
| MmeI | TCCRAC | 1 cut(s) | 411 |
| Mph1103I | ATGCAT | 1 cut(s) | 669 |
| MroNI | GCCGGC | 1 cut(s) | 217 |
| MseI | TTAA | 2 cut(s) | 449, 573 |
| MspA1I | CMGCKG | 1 cut(s) | 1510 |
| MspI | CCGG | 6 cut(s) | 131, 218, 590, 740, 1496, 1670 |
| MspR9I | CCNGG | 3 cut(s) | 108, 591, 1670 |
| Mva1269I | GAATGC | 1 cut(s) | 580 |
| MvaI | CCWGG | 1 cut(s) | 108 |
| MvnI | CGCG | 4 cut(s) | 475, 636, 674, 676 |
| NaeI | GCCGGC | 1 cut(s) | 219 |
| NciI | CCSGG | 2 cut(s) | 591, 1670 |
| NdeII | GATC | 3 cut(s) | 501, 539, 1617 |
| NgoMIV | GCCGGC | 1 cut(s) | 217 |
| NmeAIII | GCCGAG | 1 cut(s) | 1620 |
| NmuCI | GTSAC | 3 cut(s) | 262, 972, 1013 |
| NsiI | ATGCAT | 1 cut(s) | 669 |
| NspI | RCATGY | 5 cut(s) | 24, 343, 667, 671, 973 |
| PaeI | GCATGC | 1 cut(s) | 667 |
| PasI | CCCWGGG | 1 cut(s) | 107 |
| PceI | AGGCCT | 1 cut(s) | 456 |
| PciI | ACATGT | 2 cut(s) | 20, 339 |
| PciSI | GCTCTTC | 1 cut(s) | 1157 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 132 |
| PctI | GAATGC | 1 cut(s) | 580 |
| PdiI | GCCGGC | 1 cut(s) | 219 |
| PfeI | GAWTC | 2 cut(s) | 77, 1502 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 24, 107 |
| PinAI | ACCGGT | 1 cut(s) | 130 |
| PleI | GAGTC | 4 cut(s) | 732, 1089, 1280, 1507 |
| PmaCI | CACGTG | 1 cut(s) | 493 |
| PmlI | CACGTG | 1 cut(s) | 493 |
| PpsI | GAGTC | 4 cut(s) | 732, 1089, 1280, 1507 |
| Ppu21I | YACGTR | 1 cut(s) | 493 |
| PpuMI | RGGWCCY | 1 cut(s) | 1660 |
| PscI | ACATGT | 2 cut(s) | 20, 339 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1129 |
| Psp124BI | GAGCTC | 1 cut(s) | 1152 |
| Psp5II | RGGWCCY | 1 cut(s) | 1660 |
| Psp6I | CCWGG | 1 cut(s) | 106 |
| PspCI | CACGTG | 1 cut(s) | 493 |
| PspFI | CCCAGC | 3 cut(s) | 221, 1225, 1454 |
| PspGI | CCWGG | 1 cut(s) | 106 |
| PspPPI | RGGWCCY | 1 cut(s) | 1660 |
| PstI | CTGCAG | 1 cut(s) | 1218 |
| PstNI | CAGNNNCTG | 2 cut(s) | 937, 1192 |
| PsuI | RGATCY | 1 cut(s) | 539 |
| PvuII | CAGCTG | 1 cut(s) | 1510 |
| RsaI | GTAC | 4 cut(s) | 227, 237, 1424, 1582 |
| RsaNI | GTAC | 4 cut(s) | 226, 236, 1423, 1581 |
| SacI | GAGCTC | 1 cut(s) | 1152 |
| SalI | GTCGAC | 2 cut(s) | 549, 701 |
| SapI | GCTCTTC | 1 cut(s) | 1157 |
| SaqAI | TTAA | 2 cut(s) | 449, 573 |
| Sau3AI | GATC | 3 cut(s) | 501, 539, 1617 |
| SchI | GAGTC | 4 cut(s) | 733, 1089, 1280, 1507 |
| ScrFI | CCNGG | 3 cut(s) | 108, 591, 1670 |
| SduI | GDGCHC | 3 cut(s) | 920, 1152, 1601 |
| SfaNI | GCATC | 2 cut(s) | 267, 1285 |
| SfcI | CTRYAG | 2 cut(s) | 94, 1214 |
| SinI | GGWCC | 6 cut(s) | 384, 631, 1204, 1660, 1696, 1706 |
| SphI | GCATGC | 1 cut(s) | 667 |
| Sse9I | AATT | 4 cut(s) | 54, 112, 1047, 1536 |
| SseBI | AGGCCT | 1 cut(s) | 456 |
| SspMI | CTAG | 2 cut(s) | 1292, 1340 |
| SstI | GAGCTC | 1 cut(s) | 1152 |
| StuI | AGGCCT | 1 cut(s) | 456 |
| StyD4I | CCNGG | 3 cut(s) | 106, 589, 1668 |
| StyI | CCWWGG | 4 cut(s) | 256, 772, 1207, 1272 |
| TaaI | ACNGT | 5 cut(s) | 85, 392, 700, 939, 1396 |
| TaiI | ACGT | 5 cut(s) | 209, 495, 570, 816, 1166 |
| TaqI | TCGA | 9 cut(s) | 52, 80, 550, 702, 922, 964, 1182, 1257, 1378 |
| TasI | AATT | 4 cut(s) | 54, 112, 1047, 1536 |
| TatI | WGTACW | 2 cut(s) | 1422, 1580 |
| TauI | GCSGC | 9 cut(s) | 524, 679, 686, 901, 1266, 1391, 1448, 1562, 1653 |
| TfiI | GAWTC | 2 cut(s) | 77, 1502 |
| Tru1I | TTAA | 2 cut(s) | 449, 573 |
| Tru9I | TTAA | 2 cut(s) | 449, 573 |
| TscAI | CASTG | 7 cut(s) | 90, 279, 366, 491, 720, 1379, 1399 |
| TseFI | GTSAC | 3 cut(s) | 262, 972, 1013 |
| TseI | GCWGC | 6 cut(s) | 376, 586, 862, 1186, 1471, 1647 |
| Tsp45I | GTSAC | 3 cut(s) | 262, 972, 1013 |
| TspDTI | ATGAA | 2 cut(s) | 1454, 1697 |
| TspGWI | ACGGA | 2 cut(s) | 1340, 1397 |
| TspRI | CASTG | 7 cut(s) | 90, 279, 366, 491, 720, 1379, 1399 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 24, 107 |
| VpaK11BI | GGWCC | 6 cut(s) | 384, 631, 1204, 1660, 1696, 1706 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1271 |
| XapI | RAATTY | 3 cut(s) | 54, 112, 1536 |
| XceI | RCATGY | 5 cut(s) | 24, 343, 667, 671, 973 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 770, 1243 |
| XmiI | GTMKAC | 4 cut(s) | 300, 550, 702, 1322 |
| XspI | CTAG | 2 cut(s) | 1292, 1340 |
| ZraI | GACGTC | 2 cut(s) | 207, 814 |
| Zsp2I | ATGCAT | 1 cut(s) | 669 |