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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 33, 134, 179 |
| AccBSI | CCGCTC | 2 cut(s) | 653, 665 |
| AccII | CGCG | 1 cut(s) | 372 |
| AclWI | GGATC | 1 cut(s) | 721 |
| AcoI | YGGCCR | 2 cut(s) | 472, 643 |
| AcuI | CTGAAG | 3 cut(s) | 35, 476, 729 |
| AcyI | GRCGYC | 3 cut(s) | 34, 180, 590 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 16, 43, 106, 599, 652 |
| AjnI | CCWGG | 2 cut(s) | 81, 166 |
| AleI | CACNNNNGTG | 1 cut(s) | 424 |
| AluBI | AGCT | 5 cut(s) | 66, 496, 551, 572, 702 |
| AluI | AGCT | 5 cut(s) | 66, 496, 551, 572, 702 |
| Alw26I | GTCTC | 2 cut(s) | 77, 552 |
| AlwI | GGATC | 1 cut(s) | 721 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 442 |
| Ama87I | CYCGRG | 1 cut(s) | 660 |
| AoxI | GGCC | 6 cut(s) | 46, 164, 286, 472, 643, 730 |
| ApaI | GGGCCC | 1 cut(s) | 290 |
| ApeKI | GCWGC | 2 cut(s) | 347, 551 |
| AspLEI | GCGC | 2 cut(s) | 36, 182 |
| AspS9I | GGNCC | 6 cut(s) | 46, 85, 286, 287, 457, 656 |
| AvaI | CYCGRG | 1 cut(s) | 660 |
| AvaII | GGWCC | 3 cut(s) | 85, 457, 656 |
| BaeGI | GKGCMC | 1 cut(s) | 290 |
| BalI | TGGCCA | 1 cut(s) | 645 |
| BanI | GGYRCC | 3 cut(s) | 33, 134, 179 |
| BanII | GRGCYC | 1 cut(s) | 290 |
| BbvCI | CCTCAGC | 1 cut(s) | 186 |
| BbvI | GCAGC | 2 cut(s) | 359, 538 |
| BccI | CCATC | 1 cut(s) | 447 |
| BceAI | ACGGC | 2 cut(s) | 459, 487 |
| BciT130I | CCWGG | 2 cut(s) | 83, 168 |
| BcoDI | GTCTC | 2 cut(s) | 77, 552 |
| BfaI | CTAG | 1 cut(s) | 360 |
| BfmI | CTRYAG | 1 cut(s) | 552 |
| BfoI | RGCGCY | 2 cut(s) | 37, 183 |
| BisI | GCNGC | 8 cut(s) | 100, 183, 199, 234, 237, 348, 552, 724 |
| BlsI | GCNGC | 8 cut(s) | 101, 184, 200, 235, 238, 349, 553, 725 |
| Bme1390I | CCNGG | 2 cut(s) | 83, 168 |
| Bme18I | GGWCC | 3 cut(s) | 85, 457, 656 |
| BmeT110I | CYCGRG | 1 cut(s) | 660 |
| BmgT120I | GGNCC | 6 cut(s) | 46, 85, 286, 287, 457, 656 |
| BmrFI | CCNGG | 2 cut(s) | 83, 168 |
| BmrI | ACTGGG | 2 cut(s) | 98, 292 |
| BmsI | GCATC | 4 cut(s) | 260, 473, 518, 611 |
| BmuI | ACTGGG | 2 cut(s) | 98, 292 |
| BoxI | GACNNNNGTC | 1 cut(s) | 474 |
| BpmI | CTGGAG | 1 cut(s) | 61 |
| Bpu10I | CCTNAGC | 2 cut(s) | 186, 435 |
| BsaHI | GRCGYC | 3 cut(s) | 34, 180, 590 |
| BsaI | GGTCTC | 1 cut(s) | 552 |
| BsaJI | CCNNGG | 1 cut(s) | 598 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 663, 693 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 16, 43, 106, 599, 652 |
| Bse1I | ACTGG | 2 cut(s) | 104, 287 |
| Bse3DI | GCAATG | 1 cut(s) | 157 |
| BseBI | CCWGG | 2 cut(s) | 83, 168 |
| BseDI | CCNNGG | 1 cut(s) | 598 |
| BseGI | GGATG | 3 cut(s) | 458, 584, 626 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 16, 43, 106, 599, 652 |
| BseMI | GCAATG | 1 cut(s) | 157 |
| BseMII | CTCAG | 3 cut(s) | 177, 391, 449 |
| BseNI | ACTGG | 2 cut(s) | 104, 287 |
| BseRI | GAGGAG | 3 cut(s) | 267, 270, 273 |
| BseSI | GKGCMC | 1 cut(s) | 290 |
| BseX3I | CGGCCG | 1 cut(s) | 472 |
| BseXI | GCAGC | 2 cut(s) | 359, 538 |
| BseYI | CCCAGC | 1 cut(s) | 336 |
| BsgI | GTGCAG | 1 cut(s) | 366 |
| Bsh1236I | CGCG | 1 cut(s) | 372 |
| Bsh1285I | CGRYCG | 1 cut(s) | 475 |
| BshFI | GGCC | 6 cut(s) | 48, 166, 288, 474, 645, 732 |
| BshNI | GGYRCC | 3 cut(s) | 33, 134, 179 |
| BsiEI | CGRYCG | 1 cut(s) | 475 |
| BsiHKCI | CYCGRG | 1 cut(s) | 660 |
| BsiSI | CCGG | 1 cut(s) | 25 |
| BslFI | GGGAC | 2 cut(s) | 470, 669 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 16, 43, 106, 599, 652 |
| BsmAI | GTCTC | 2 cut(s) | 77, 552 |
| BsmFI | GGGAC | 2 cut(s) | 470, 669 |
| BsnI | GGCC | 6 cut(s) | 48, 166, 288, 474, 645, 732 |
| Bso31I | GGTCTC | 1 cut(s) | 552 |
| BsoBI | CYCGRG | 1 cut(s) | 660 |
| Bsp120I | GGGCCC | 1 cut(s) | 286 |
| Bsp1286I | GDGCHC | 1 cut(s) | 290 |
| Bsp143I | GATC | 1 cut(s) | 713 |
| BspANI | GGCC | 6 cut(s) | 48, 166, 288, 474, 645, 732 |
| BspCNI | CTCAG | 3 cut(s) | 178, 392, 448 |
| BspFNI | CGCG | 1 cut(s) | 372 |
| BspMAI | CTGCAG | 1 cut(s) | 556 |
| BspPI | GGATC | 1 cut(s) | 721 |
| BspT107I | GGYRCC | 3 cut(s) | 33, 134, 179 |
| BspTNI | GGTCTC | 1 cut(s) | 552 |
| BsrBI | CCGCTC | 2 cut(s) | 653, 665 |
| BsrDI | GCAATG | 1 cut(s) | 157 |
| BsrI | ACTGG | 2 cut(s) | 104, 287 |
| BssECI | CCNNGG | 1 cut(s) | 598 |
| BssMI | GATC | 1 cut(s) | 713 |
| BssNI | GRCGYC | 3 cut(s) | 34, 180, 590 |
| BssT1I | CCWWGG | 1 cut(s) | 598 |
| Bst2UI | CCWGG | 2 cut(s) | 83, 168 |
| Bst4CI | ACNGT | 3 cut(s) | 134, 326, 461 |
| Bst6I | CTCTTC | 1 cut(s) | 294 |
| BstACI | GRCGYC | 3 cut(s) | 34, 180, 590 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 270 |
| BstC8I | GCNNGC | 6 cut(s) | 164, 178, 290, 313, 447, 574 |
| BstDEI | CTNAG | 3 cut(s) | 186, 400, 435 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 597 |
| BstF5I | GGATG | 3 cut(s) | 458, 584, 626 |
| BstFNI | CGCG | 1 cut(s) | 372 |
| BstH2I | RGCGCY | 2 cut(s) | 37, 183 |
| BstHHI | GCGC | 2 cut(s) | 36, 182 |
| BstKTI | GATC | 1 cut(s) | 716 |
| BstMAI | GTCTC | 2 cut(s) | 77, 552 |
| BstMBI | GATC | 1 cut(s) | 713 |
| BstMCI | CGRYCG | 1 cut(s) | 475 |
| BstNI | CCWGG | 2 cut(s) | 83, 168 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 474 |
| BstSCI | CCNGG | 2 cut(s) | 81, 166 |
| BstSFI | CTRYAG | 1 cut(s) | 552 |
| BstSLI | GKGCMC | 1 cut(s) | 290 |
| BstUI | CGCG | 1 cut(s) | 372 |
| BstV1I | GCAGC | 2 cut(s) | 359, 538 |
| BstZI | CGGCCG | 1 cut(s) | 472 |
| BsuRI | GGCC | 6 cut(s) | 48, 166, 288, 474, 645, 732 |
| BtsCI | GGATG | 3 cut(s) | 458, 584, 626 |
| BtsI | GCAGTG | 1 cut(s) | 349 |
| BtsIMutI | CAGTG | 5 cut(s) | 59, 111, 280, 349, 523 |
| Cac8I | GCNNGC | 6 cut(s) | 164, 178, 290, 313, 447, 574 |
| CaiI | CAGNNNCTG | 1 cut(s) | 442 |
| CfoI | GCGC | 2 cut(s) | 36, 182 |
| Cfr13I | GGNCC | 6 cut(s) | 46, 85, 286, 287, 457, 656 |
| CseI | GACGC | 3 cut(s) | 361, 598, 621 |
| CviAII | CATG | 1 cut(s) | 528 |
| DdeI | CTNAG | 3 cut(s) | 186, 400, 435 |
| DinI | GGCGCC | 2 cut(s) | 35, 181 |
| DpnI | GATC | 1 cut(s) | 715 |
| DpnII | GATC | 1 cut(s) | 713 |
| EaeI | YGGCCR | 2 cut(s) | 472, 643 |
| EagI | CGGCCG | 1 cut(s) | 472 |
| Eam1104I | CTCTTC | 1 cut(s) | 294 |
| EarI | CTCTTC | 1 cut(s) | 294 |
| EciI | GGCGGA | 1 cut(s) | 591 |
| EclXI | CGGCCG | 1 cut(s) | 472 |
| Eco130I | CCWWGG | 1 cut(s) | 598 |
| Eco24I | GRGCYC | 1 cut(s) | 290 |
| Eco31I | GGTCTC | 1 cut(s) | 552 |
| Eco47I | GGWCC | 3 cut(s) | 85, 457, 656 |
| Eco52I | CGGCCG | 1 cut(s) | 472 |
| Eco57I | CTGAAG | 3 cut(s) | 35, 476, 729 |
| Eco88I | CYCGRG | 1 cut(s) | 660 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 597 |
| EcoO109I | RGGNCCY | 3 cut(s) | 46, 286, 656 |
| EcoRII | CCWGG | 2 cut(s) | 81, 166 |
| EcoT14I | CCWWGG | 1 cut(s) | 598 |
| EcoT38I | GRGCYC | 1 cut(s) | 290 |
| EgeI | GGCGCC | 2 cut(s) | 35, 181 |
| EheI | GGCGCC | 2 cut(s) | 35, 181 |
| ErhI | CCWWGG | 1 cut(s) | 598 |
| FaeI | CATG | 1 cut(s) | 531 |
| FaiI | YATR | 4 cut(s) | 379, 529, 618, 699 |
| FaqI | GGGAC | 2 cut(s) | 470, 669 |
| FatI | CATG | 1 cut(s) | 527 |
| FauI | CCCGC | 4 cut(s) | 21, 297, 438, 646 |
| Fnu4HI | GCNGC | 8 cut(s) | 100, 183, 199, 234, 237, 348, 552, 724 |
| FokI | GGATG | 3 cut(s) | 465, 591, 633 |
| FriOI | GRGCYC | 1 cut(s) | 290 |
| Fsp4HI | GCNGC | 8 cut(s) | 100, 183, 199, 234, 237, 348, 552, 724 |
| FspBI | CTAG | 1 cut(s) | 360 |
| GlaI | GCGC | 2 cut(s) | 35, 181 |
| GluI | GCNGC | 8 cut(s) | 100, 183, 199, 234, 237, 348, 552, 724 |
| GsaI | CCCAGC | 1 cut(s) | 340 |
| GsuI | CTGGAG | 1 cut(s) | 61 |
| HaeII | RGCGCY | 2 cut(s) | 37, 183 |
| HaeIII | GGCC | 6 cut(s) | 48, 166, 288, 474, 645, 732 |
| HapII | CCGG | 1 cut(s) | 25 |
| HgaI | GACGC | 3 cut(s) | 361, 598, 621 |
| HhaI | GCGC | 2 cut(s) | 36, 182 |
| Hin1I | GRCGYC | 3 cut(s) | 34, 180, 590 |
| Hin1II | CATG | 1 cut(s) | 531 |
| Hin6I | GCGC | 2 cut(s) | 34, 180 |
| HinP1I | GCGC | 2 cut(s) | 34, 180 |
| HinfI | GANTC | 2 cut(s) | 363, 396 |
| HpaII | CCGG | 1 cut(s) | 25 |
| Hpy188I | TCNGA | 2 cut(s) | 401, 469 |
| Hpy188III | TCNNGA | 1 cut(s) | 360 |
| Hpy99I | CGWCG | 2 cut(s) | 592, 615 |
| HpyAV | CCTTC | 6 cut(s) | 16, 59, 86, 500, 512, 704 |
| HpyCH4III | ACNGT | 3 cut(s) | 134, 326, 461 |
| HpyCH4V | TGCA | 4 cut(s) | 224, 347, 464, 554 |
| HpyF3I | CTNAG | 3 cut(s) | 186, 400, 435 |
| Hsp92I | GRCGYC | 3 cut(s) | 34, 180, 590 |
| Hsp92II | CATG | 1 cut(s) | 531 |
| HspAI | GCGC | 2 cut(s) | 34, 180 |
| KasI | GGCGCC | 2 cut(s) | 33, 179 |
| Kzo9I | GATC | 1 cut(s) | 713 |
| LmnI | GCTCC | 2 cut(s) | 548, 584 |
| Lsp1109I | GCAGC | 2 cut(s) | 359, 538 |
| LweI | GCATC | 4 cut(s) | 260, 473, 518, 611 |
| MaeI | CTAG | 1 cut(s) | 360 |
| MaeIII | GTNAC | 2 cut(s) | 152, 278 |
| MalI | GATC | 1 cut(s) | 715 |
| MbiI | CCGCTC | 2 cut(s) | 653, 665 |
| MboI | GATC | 1 cut(s) | 713 |
| MboII | GAAGA | 1 cut(s) | 311 |
| MhlI | GDGCHC | 1 cut(s) | 290 |
| MlsI | TGGCCA | 1 cut(s) | 645 |
| MluCI | AATT | 1 cut(s) | 684 |
| MluNI | TGGCCA | 1 cut(s) | 645 |
| Mly113I | GGCGCC | 2 cut(s) | 34, 180 |
| MlyI | GAGTC | 2 cut(s) | 357, 390 |
| MmeI | TCCRAC | 1 cut(s) | 503 |
| Mox20I | TGGCCA | 1 cut(s) | 645 |
| MscI | TGGCCA | 1 cut(s) | 645 |
| MslI | CAYNNNNRTG | 1 cut(s) | 424 |
| Msp20I | TGGCCA | 1 cut(s) | 645 |
| MspA1I | CMGCKG | 3 cut(s) | 16, 185, 201 |
| MspI | CCGG | 1 cut(s) | 25 |
| MspR9I | CCNGG | 2 cut(s) | 83, 168 |
| MvaI | CCWGG | 2 cut(s) | 83, 168 |
| MvnI | CGCG | 1 cut(s) | 372 |
| NarI | GGCGCC | 2 cut(s) | 34, 180 |
| NdeII | GATC | 1 cut(s) | 713 |
| NlaIII | CATG | 1 cut(s) | 531 |
| NmeAIII | GCCGAG | 1 cut(s) | 62 |
| NmuCI | GTSAC | 1 cut(s) | 278 |
| OliI | CACNNNNGTG | 1 cut(s) | 424 |
| PaeR7I | CTCGAG | 1 cut(s) | 660 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 667 |
| PkrI | GCNGC | 8 cut(s) | 101, 184, 200, 235, 238, 349, 553, 725 |
| PleI | GAGTC | 2 cut(s) | 357, 390 |
| PluTI | GGCGCC | 2 cut(s) | 37, 183 |
| PpsI | GAGTC | 2 cut(s) | 357, 390 |
| PpuMI | RGGWCCY | 1 cut(s) | 656 |
| PshAI | GACNNNNGTC | 1 cut(s) | 474 |
| Psp5II | RGGWCCY | 1 cut(s) | 656 |
| Psp6I | CCWGG | 2 cut(s) | 81, 166 |
| PspFI | CCCAGC | 1 cut(s) | 336 |
| PspGI | CCWGG | 2 cut(s) | 81, 166 |
| PspOMI | GGGCCC | 1 cut(s) | 286 |
| PspPI | GGNCC | 6 cut(s) | 46, 85, 286, 287, 457, 656 |
| PspPPI | RGGWCCY | 1 cut(s) | 656 |
| PspXI | VCTCGAGB | 1 cut(s) | 660 |
| PstI | CTGCAG | 1 cut(s) | 556 |
| PstNI | CAGNNNCTG | 1 cut(s) | 442 |
| RseI | CAYNNNNRTG | 1 cut(s) | 424 |
| SatI | GCNGC | 8 cut(s) | 100, 183, 199, 234, 237, 348, 552, 724 |
| Sau3AI | GATC | 1 cut(s) | 713 |
| Sau96I | GGNCC | 6 cut(s) | 46, 85, 286, 287, 457, 656 |
| SchI | GAGTC | 2 cut(s) | 357, 390 |
| ScrFI | CCNGG | 2 cut(s) | 83, 168 |
| SduI | GDGCHC | 1 cut(s) | 290 |
| SfaNI | GCATC | 4 cut(s) | 260, 473, 518, 611 |
| SfcI | CTRYAG | 1 cut(s) | 552 |
| SfoI | GGCGCC | 2 cut(s) | 35, 181 |
| Sfr274I | CTCGAG | 1 cut(s) | 660 |
| SinI | GGWCC | 3 cut(s) | 85, 457, 656 |
| SlaI | CTCGAG | 1 cut(s) | 660 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 424 |
| SmlI | CTYRAG | 1 cut(s) | 660 |
| SmoI | CTYRAG | 1 cut(s) | 660 |
| Sse9I | AATT | 1 cut(s) | 684 |
| SspDI | GGCGCC | 2 cut(s) | 33, 179 |
| SspMI | CTAG | 1 cut(s) | 360 |
| StyD4I | CCNGG | 2 cut(s) | 81, 166 |
| StyI | CCWWGG | 1 cut(s) | 598 |
| TaaI | ACNGT | 3 cut(s) | 134, 326, 461 |
| TaqI | TCGA | 2 cut(s) | 498, 661 |
| TasI | AATT | 1 cut(s) | 684 |
| TauI | GCSGC | 6 cut(s) | 102, 185, 201, 236, 239, 726 |
| TscAI | CASTG | 5 cut(s) | 59, 111, 287, 349, 523 |
| TseFI | GTSAC | 1 cut(s) | 278 |
| TseI | GCWGC | 2 cut(s) | 347, 551 |
| Tsp45I | GTSAC | 1 cut(s) | 278 |
| TspRI | CASTG | 5 cut(s) | 59, 111, 287, 349, 523 |
| VpaK11BI | GGWCC | 3 cut(s) | 85, 457, 656 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 597 |
| XbaI | TCTAGA | 1 cut(s) | 359 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 164, 569 |
| XhoI | CTCGAG | 1 cut(s) | 660 |
| XspI | CTAG | 1 cut(s) | 360 |