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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 334, 520 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 585 |
| AccII | CGCG | 3 cut(s) | 233, 263, 476 |
| AccIII | TCCGGA | 2 cut(s) | 460, 627 |
| AcoI | YGGCCR | 2 cut(s) | 258, 612 |
| AcsI | RAATTY | 2 cut(s) | 548, 570 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 25, 200, 384, 433, 585 |
| AgsI | TTSAA | 1 cut(s) | 533 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 308 |
| Alw21I | GWGCWC | 1 cut(s) | 483 |
| Alw26I | GTCTC | 2 cut(s) | 93, 212 |
| Alw44I | GTGCAC | 1 cut(s) | 479 |
| Ama87I | CYCGRG | 1 cut(s) | 326 |
| Aor13HI | TCCGGA | 2 cut(s) | 460, 627 |
| AoxI | GGCC | 2 cut(s) | 258, 612 |
| ApaLI | GTGCAC | 1 cut(s) | 479 |
| ApeKI | GCWGC | 1 cut(s) | 421 |
| ApoI | RAATTY | 2 cut(s) | 548, 570 |
| AspLEI | GCGC | 4 cut(s) | 233, 265, 426, 604 |
| AsuC2I | CCSGG | 3 cut(s) | 327, 328, 386 |
| AsuHPI | GGTGA | 1 cut(s) | 400 |
| AvaI | CYCGRG | 1 cut(s) | 326 |
| BaeGI | GKGCMC | 1 cut(s) | 483 |
| BanI | GGYRCC | 2 cut(s) | 334, 520 |
| BauI | CACGAG | 1 cut(s) | 482 |
| Bbv12I | GWGCWC | 1 cut(s) | 483 |
| BbvI | GCAGC | 1 cut(s) | 408 |
| BccI | CCATC | 2 cut(s) | 112, 325 |
| BceAI | ACGGC | 6 cut(s) | 244, 270, 320, 325, 362, 599 |
| BcnI | CCSGG | 3 cut(s) | 327, 328, 386 |
| BcoDI | GTCTC | 2 cut(s) | 93, 212 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 266 |
| BisI | GCNGC | 6 cut(s) | 258, 261, 270, 375, 422, 474 |
| BlsI | GCNGC | 6 cut(s) | 259, 262, 271, 376, 423, 475 |
| Bme1390I | CCNGG | 3 cut(s) | 327, 328, 386 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 308 |
| BmeT110I | CYCGRG | 1 cut(s) | 326 |
| BmiI | GGNNCC | 4 cut(s) | 273, 321, 336, 522 |
| BmrFI | CCNGG | 3 cut(s) | 327, 328, 386 |
| BmsI | GCATC | 1 cut(s) | 585 |
| BpuMI | CCSGG | 3 cut(s) | 327, 328, 386 |
| BsaJI | CCNNGG | 5 cut(s) | 278, 326, 474, 499, 615 |
| BsaWI | WCCGGW | 2 cut(s) | 460, 627 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 90, 120 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 25, 200, 384, 433, 585 |
| Bse118I | RCCGGY | 1 cut(s) | 265 |
| BseAI | TCCGGA | 2 cut(s) | 460, 627 |
| BseDI | CCNNGG | 5 cut(s) | 278, 326, 474, 499, 615 |
| BseGI | GGATG | 5 cut(s) | 336, 369, 402, 445, 636 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 25, 200, 384, 433, 585 |
| BseRI | GAGGAG | 2 cut(s) | 295, 369 |
| BseSI | GKGCMC | 1 cut(s) | 483 |
| BseX3I | CGGCCG | 2 cut(s) | 258, 612 |
| BseXI | GCAGC | 1 cut(s) | 408 |
| Bsh1236I | CGCG | 3 cut(s) | 233, 263, 476 |
| Bsh1285I | CGRYCG | 2 cut(s) | 261, 615 |
| BshFI | GGCC | 2 cut(s) | 260, 614 |
| BshNI | GGYRCC | 2 cut(s) | 334, 520 |
| BsiEI | CGRYCG | 2 cut(s) | 261, 615 |
| BsiHKAI | GWGCWC | 1 cut(s) | 483 |
| BsiHKCI | CYCGRG | 1 cut(s) | 326 |
| BsiSI | CCGG | 5 cut(s) | 266, 327, 385, 461, 628 |
| BslFI | GGGAC | 2 cut(s) | 57, 171 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 25, 200, 384, 433, 585 |
| BsmAI | GTCTC | 2 cut(s) | 93, 212 |
| BsmFI | GGGAC | 2 cut(s) | 57, 171 |
| BsnI | GGCC | 2 cut(s) | 260, 614 |
| BsoBI | CYCGRG | 1 cut(s) | 326 |
| Bsp1286I | GDGCHC | 1 cut(s) | 483 |
| Bsp13I | TCCGGA | 2 cut(s) | 460, 627 |
| BspANI | GGCC | 2 cut(s) | 260, 614 |
| BspEI | TCCGGA | 2 cut(s) | 460, 627 |
| BspFNI | CGCG | 3 cut(s) | 233, 263, 476 |
| BspLI | GGNNCC | 4 cut(s) | 273, 321, 336, 522 |
| BspT107I | GGYRCC | 2 cut(s) | 334, 520 |
| BsrFI | RCCGGY | 1 cut(s) | 265 |
| BssAI | RCCGGY | 1 cut(s) | 265 |
| BssECI | CCNNGG | 5 cut(s) | 278, 326, 474, 499, 615 |
| BssSI | CACGAG | 1 cut(s) | 482 |
| BssT1I | CCWWGG | 1 cut(s) | 499 |
| Bst2BI | CACGAG | 1 cut(s) | 482 |
| Bst4CI | ACNGT | 1 cut(s) | 436 |
| BstC8I | GCNNGC | 6 cut(s) | 23, 84, 249, 267, 428, 600 |
| BstDEI | CTNAG | 1 cut(s) | 538 |
| BstDSI | CCRYGG | 2 cut(s) | 474, 615 |
| BstF5I | GGATG | 5 cut(s) | 336, 369, 402, 445, 636 |
| BstFNI | CGCG | 3 cut(s) | 233, 263, 476 |
| BstHHI | GCGC | 4 cut(s) | 233, 265, 426, 604 |
| BstMAI | GTCTC | 2 cut(s) | 93, 212 |
| BstMCI | CGRYCG | 2 cut(s) | 261, 615 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 257, 266, 269, 358, 427, 595 |
| BstSCI | CCNGG | 3 cut(s) | 325, 326, 384 |
| BstSLI | GKGCMC | 1 cut(s) | 483 |
| BstUI | CGCG | 3 cut(s) | 233, 263, 476 |
| BstV1I | GCAGC | 1 cut(s) | 408 |
| BstZI | CGGCCG | 2 cut(s) | 258, 612 |
| BsuRI | GGCC | 2 cut(s) | 260, 614 |
| BtgI | CCRYGG | 2 cut(s) | 474, 615 |
| BtsCI | GGATG | 5 cut(s) | 336, 369, 402, 445, 636 |
| Cac8I | GCNNGC | 6 cut(s) | 23, 84, 249, 267, 428, 600 |
| CciNI | GCGGCCGC | 1 cut(s) | 258 |
| CfoI | GCGC | 4 cut(s) | 233, 265, 426, 604 |
| Cfr10I | RCCGGY | 1 cut(s) | 265 |
| Cfr42I | CCGCGG | 1 cut(s) | 477 |
| Cfr9I | CCCGGG | 1 cut(s) | 326 |
| CviJI | RGCY | 5 cut(s) | 82, 260, 272, 421, 614 |
| CviKI_1 | RGCY | 5 cut(s) | 82, 260, 272, 421, 614 |
| DdeI | CTNAG | 1 cut(s) | 538 |
| DriI | GACNNNNNGTC | 1 cut(s) | 308 |
| EaeI | YGGCCR | 2 cut(s) | 258, 612 |
| EagI | CGGCCG | 2 cut(s) | 258, 612 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 308 |
| EciI | GGCGGA | 4 cut(s) | 230, 264, 376, 485 |
| EclXI | CGGCCG | 2 cut(s) | 258, 612 |
| Eco130I | CCWWGG | 1 cut(s) | 499 |
| Eco52I | CGGCCG | 2 cut(s) | 258, 612 |
| Eco88I | CYCGRG | 1 cut(s) | 326 |
| EcoT14I | CCWWGG | 1 cut(s) | 499 |
| ErhI | CCWWGG | 1 cut(s) | 499 |
| FaiI | YATR | 2 cut(s) | 491, 584 |
| FaqI | GGGAC | 2 cut(s) | 57, 171 |
| FauI | CCCGC | 9 cut(s) | 18, 33, 79, 132, 147, 193, 287, 395, 435 |
| Fnu4HI | GCNGC | 6 cut(s) | 258, 261, 270, 375, 422, 474 |
| FokI | GGATG | 4 cut(s) | 343, 376, 409, 452 |
| Fsp4HI | GCNGC | 6 cut(s) | 258, 261, 270, 375, 422, 474 |
| GlaI | GCGC | 4 cut(s) | 232, 264, 425, 603 |
| GluI | GCNGC | 6 cut(s) | 258, 261, 270, 375, 422, 474 |
| HaeIII | GGCC | 2 cut(s) | 260, 614 |
| HapII | CCGG | 5 cut(s) | 266, 327, 385, 461, 628 |
| HhaI | GCGC | 4 cut(s) | 233, 265, 426, 604 |
| Hin6I | GCGC | 4 cut(s) | 231, 263, 424, 602 |
| HinP1I | GCGC | 4 cut(s) | 231, 263, 424, 602 |
| HincII | GTYRAC | 2 cut(s) | 345, 382 |
| HindII | GTYRAC | 2 cut(s) | 345, 382 |
| HinfI | GANTC | 3 cut(s) | 309, 449, 485 |
| HpaII | CCGG | 5 cut(s) | 266, 327, 385, 461, 628 |
| HphI | GGTGA | 1 cut(s) | 400 |
| Hpy166II | GTNNAC | 3 cut(s) | 345, 382, 481 |
| Hpy188I | TCNGA | 1 cut(s) | 226 |
| Hpy188III | TCNNGA | 2 cut(s) | 461, 628 |
| Hpy8I | GTNNAC | 3 cut(s) | 345, 382, 481 |
| Hpy99I | CGWCG | 4 cut(s) | 54, 168, 238, 436 |
| HpyAV | CCTTC | 3 cut(s) | 439, 539, 571 |
| HpyCH4III | ACNGT | 1 cut(s) | 436 |
| HpyCH4V | TGCA | 1 cut(s) | 481 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 257, 266, 269, 358, 427, 595 |
| HpyF3I | CTNAG | 1 cut(s) | 538 |
| HspAI | GCGC | 4 cut(s) | 231, 263, 424, 602 |
| Kpn2I | TCCGGA | 2 cut(s) | 460, 627 |
| KroI | GCCGGC | 1 cut(s) | 265 |
| KroNI | GCCGGC | 1 cut(s) | 267 |
| KspI | CCGCGG | 1 cut(s) | 477 |
| LmnI | GCTCC | 1 cut(s) | 277 |
| LpnPI | CCDG | 8 cut(s) | 7, 68, 108, 279, 340, 395, 398, 474 |
| Lsp1109I | GCAGC | 1 cut(s) | 408 |
| LweI | GCATC | 1 cut(s) | 585 |
| MaeIII | GTNAC | 2 cut(s) | 106, 505 |
| MboII | GAAGA | 4 cut(s) | 71, 185, 297, 449 |
| MhlI | GDGCHC | 1 cut(s) | 483 |
| MluCI | AATT | 2 cut(s) | 548, 570 |
| MlyI | GAGTC | 3 cut(s) | 318, 458, 494 |
| MnlI | CCTC | 8 cut(s) | 233, 273, 293, 333, 342, 347, 350, 457 |
| MreI | CGCCGGCG | 1 cut(s) | 265 |
| MroI | TCCGGA | 2 cut(s) | 460, 627 |
| MroNI | GCCGGC | 1 cut(s) | 265 |
| MspA1I | CMGCKG | 2 cut(s) | 21, 476 |
| MspI | CCGG | 5 cut(s) | 266, 327, 385, 461, 628 |
| MspR9I | CCNGG | 3 cut(s) | 327, 328, 386 |
| MvnI | CGCG | 3 cut(s) | 233, 263, 476 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 257, 266, 269, 358, 427, 595 |
| NaeI | GCCGGC | 1 cut(s) | 267 |
| NciI | CCSGG | 3 cut(s) | 327, 328, 386 |
| NgoMIV | GCCGGC | 1 cut(s) | 265 |
| NlaIV | GGNNCC | 4 cut(s) | 273, 321, 336, 522 |
| NmeAIII | GCCGAG | 5 cut(s) | 16, 130, 191, 303, 590 |
| NmuCI | GTSAC | 2 cut(s) | 106, 505 |
| NotI | GCGGCCGC | 1 cut(s) | 258 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 230 |
| PdiI | GCCGGC | 1 cut(s) | 267 |
| PflFI | GACNNNGTC | 3 cut(s) | 48, 104, 162 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 585 |
| PkrI | GCNGC | 6 cut(s) | 259, 262, 271, 376, 423, 475 |
| PleI | GAGTC | 3 cut(s) | 317, 457, 493 |
| PpsI | GAGTC | 3 cut(s) | 317, 457, 493 |
| PspN4I | GGNNCC | 4 cut(s) | 273, 321, 336, 522 |
| PsyI | GACNNNGTC | 3 cut(s) | 48, 104, 162 |
| SacII | CCGCGG | 1 cut(s) | 477 |
| SatI | GCNGC | 6 cut(s) | 258, 261, 270, 375, 422, 474 |
| SchI | GAGTC | 3 cut(s) | 318, 458, 494 |
| ScrFI | CCNGG | 3 cut(s) | 327, 328, 386 |
| SduI | GDGCHC | 1 cut(s) | 483 |
| SetI | ASST | 2 cut(s) | 244, 531 |
| SfaNI | GCATC | 1 cut(s) | 585 |
| Sfr303I | CCGCGG | 1 cut(s) | 477 |
| SgrAI | CRCCGGYG | 1 cut(s) | 265 |
| SgrBI | CCGCGG | 1 cut(s) | 477 |
| SmaI | CCCGGG | 1 cut(s) | 328 |
| Sse9I | AATT | 2 cut(s) | 548, 570 |
| StyD4I | CCNGG | 3 cut(s) | 325, 326, 384 |
| StyI | CCWWGG | 1 cut(s) | 499 |
| TaaI | ACNGT | 1 cut(s) | 436 |
| TaqII | GACCGA | 1 cut(s) | 554 |
| TasI | AATT | 2 cut(s) | 548, 570 |
| TauI | GCSGC | 5 cut(s) | 260, 263, 272, 377, 476 |
| TseFI | GTSAC | 2 cut(s) | 106, 505 |
| TseI | GCWGC | 1 cut(s) | 421 |
| Tsp45I | GTSAC | 2 cut(s) | 106, 505 |
| TspDTI | ATGAA | 1 cut(s) | 380 |
| TspGWI | ACGGA | 2 cut(s) | 183, 504 |
| TspMI | CCCGGG | 1 cut(s) | 326 |
| Tth111I | GACNNNGTC | 3 cut(s) | 48, 104, 162 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 585 |
| VneI | GTGCAC | 1 cut(s) | 479 |
| XapI | RAATTY | 2 cut(s) | 548, 570 |
| XmaI | CCCGGG | 1 cut(s) | 326 |