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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 1421 |
| AccB1I | GGYRCC | 3 cut(s) | 601, 1385, 1421 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1431 |
| AccBSI | CCGCTC | 3 cut(s) | 850, 988, 1129 |
| AccI | GTMKAC | 1 cut(s) | 1080 |
| AccII | CGCG | 6 cut(s) | 375, 518, 607, 636, 702, 1308 |
| AclWI | GGATC | 2 cut(s) | 462, 1739 |
| AcoI | YGGCCR | 3 cut(s) | 624, 1197, 1314 |
| AcuI | CTGAAG | 2 cut(s) | 731, 895 |
| AcyI | GRCGYC | 3 cut(s) | 510, 602, 965 |
| AfaI | GTAC | 8 cut(s) | 75, 233, 347, 566, 1352, 1423, 1492, 1645 |
| AfeI | AGCGCT | 1 cut(s) | 1294 |
| AflIII | ACRYGT | 2 cut(s) | 322, 1173 |
| AgsI | TTSAA | 3 cut(s) | 479, 1220, 1336 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1659 |
| AjiI | CACGTC | 1 cut(s) | 325 |
| AjnI | CCWGG | 6 cut(s) | 777, 867, 957, 1038, 1510, 1617 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 813, 845 |
| AluBI | AGCT | 6 cut(s) | 160, 463, 709, 994, 1111, 1742 |
| AluI | AGCT | 6 cut(s) | 160, 463, 709, 994, 1111, 1742 |
| Alw26I | GTCTC | 2 cut(s) | 316, 1646 |
| AlwI | GGATC | 2 cut(s) | 462, 1739 |
| Ama87I | CYCGRG | 3 cut(s) | 734, 1632, 1671 |
| Aor51HI | AGCGCT | 1 cut(s) | 1294 |
| ApaI | GGGCCC | 1 cut(s) | 700 |
| ApeKI | GCWGC | 9 cut(s) | 13, 48, 706, 1183, 1228, 1310, 1373, 1408, 1411 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 634, 666 |
| Asp718I | GGTACC | 1 cut(s) | 1421 |
| AspLEI | GCGC | 7 cut(s) | 108, 154, 604, 622, 636, 1295, 1310 |
| AsuC2I | CCSGG | 4 cut(s) | 436, 489, 1633, 1634 |
| AsuHPI | GGTGA | 7 cut(s) | 830, 830, 897, 1286, 1447, 1556, 1580 |
| AsuNHI | GCTAGC | 1 cut(s) | 1708 |
| AvaI | CYCGRG | 3 cut(s) | 734, 1632, 1671 |
| AvaII | GGWCC | 4 cut(s) | 56, 243, 529, 1677 |
| AxyI | CCTNAGG | 1 cut(s) | 173 |
| BaeGI | GKGCMC | 3 cut(s) | 700, 770, 930 |
| BanI | GGYRCC | 3 cut(s) | 601, 1385, 1421 |
| BanII | GRGCYC | 1 cut(s) | 700 |
| BauI | CACGAG | 4 cut(s) | 357, 468, 769, 1101 |
| BbvCI | CCTCAGC | 1 cut(s) | 1296 |
| BbvI | GCAGC | 8 cut(s) | 35, 718, 1170, 1240, 1297, 1385, 1395, 1423 |
| BccI | CCATC | 2 cut(s) | 1433, 1634 |
| BceAI | ACGGC | 7 cut(s) | 458, 489, 633, 647, 665, 933, 1307 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 9, 43, 1070, 1104 |
| BciT130I | CCWGG | 6 cut(s) | 779, 869, 959, 1040, 1512, 1619 |
| BcnI | CCSGG | 4 cut(s) | 436, 489, 1633, 1634 |
| BcoDI | GTCTC | 2 cut(s) | 316, 1646 |
| BfaI | CTAG | 1 cut(s) | 1709 |
| BfmI | CTRYAG | 2 cut(s) | 1226, 1409 |
| BfoI | RGCGCY | 4 cut(s) | 155, 605, 623, 1296 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1250 |
| Bme18I | GGWCC | 4 cut(s) | 56, 243, 529, 1677 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1659 |
| BmeT110I | CYCGRG | 3 cut(s) | 734, 1632, 1671 |
| BmgBI | CACGTC | 1 cut(s) | 325 |
| BmrI | ACTGGG | 3 cut(s) | 702, 1441, 1653 |
| BmsI | GCATC | 5 cut(s) | 667, 1078, 1437, 1451, 1714 |
| BmtI | GCTAGC | 1 cut(s) | 1712 |
| BmuI | ACTGGG | 3 cut(s) | 702, 1441, 1653 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1076 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1556, 1588 |
| BpmI | CTGGAG | 3 cut(s) | 646, 890, 1289 |
| Bpu10I | CCTNAGC | 4 cut(s) | 995, 1203, 1289, 1296 |
| BpuMI | CCSGG | 4 cut(s) | 436, 489, 1633, 1634 |
| Bsa29I | ATCGAT | 1 cut(s) | 1445 |
| BsaHI | GRCGYC | 3 cut(s) | 510, 602, 965 |
| BsaI | GGTCTC | 2 cut(s) | 316, 1646 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 548, 578, 818, 848 |
| Bse118I | RCCGGY | 3 cut(s) | 622, 1382, 1450 |
| Bse1I | ACTGG | 7 cut(s) | 96, 197, 697, 1436, 1463, 1659, 1716 |
| Bse21I | CCTNAGG | 1 cut(s) | 173 |
| Bse3DI | GCAATG | 1 cut(s) | 1368 |
| BseBI | CCWGG | 6 cut(s) | 779, 869, 959, 1040, 1512, 1619 |
| BseCI | ATCGAT | 1 cut(s) | 1445 |
| BseGI | GGATG | 2 cut(s) | 682, 1645 |
| BseMI | GCAATG | 1 cut(s) | 1368 |
| BseMII | CTCAG | 5 cut(s) | 148, 164, 1280, 1287, 1589 |
| BseNI | ACTGG | 7 cut(s) | 96, 197, 697, 1436, 1463, 1659, 1716 |
| BseRI | GAGGAG | 1 cut(s) | 1016 |
| BseSI | GKGCMC | 3 cut(s) | 700, 770, 930 |
| BseX3I | CGGCCG | 1 cut(s) | 1314 |
| BseXI | GCAGC | 8 cut(s) | 35, 718, 1170, 1240, 1297, 1385, 1395, 1423 |
| BseYI | CCCAGC | 1 cut(s) | 1610 |
| Bsh1236I | CGCG | 6 cut(s) | 375, 518, 607, 636, 702, 1308 |
| Bsh1285I | CGRYCG | 3 cut(s) | 63, 1317, 1455 |
| BshNI | GGYRCC | 3 cut(s) | 601, 1385, 1421 |
| BshVI | ATCGAT | 1 cut(s) | 1445 |
| BsiEI | CGRYCG | 3 cut(s) | 63, 1317, 1455 |
| BsiHKCI | CYCGRG | 3 cut(s) | 734, 1632, 1671 |
| BsiSI | CCGG | 6 cut(s) | 435, 488, 623, 1383, 1451, 1633 |
| BslFI | GGGAC | 6 cut(s) | 592, 1037, 1145, 1162, 1588, 1647 |
| BsmAI | GTCTC | 2 cut(s) | 316, 1646 |
| BsmFI | GGGAC | 6 cut(s) | 592, 1037, 1145, 1162, 1588, 1647 |
| Bso31I | GGTCTC | 2 cut(s) | 316, 1646 |
| BsoBI | CYCGRG | 3 cut(s) | 734, 1632, 1671 |
| Bsp120I | GGGCCC | 1 cut(s) | 696 |
| Bsp1286I | GDGCHC | 3 cut(s) | 700, 770, 930 |
| Bsp143I | GATC | 3 cut(s) | 454, 540, 1744 |
| Bsp19I | CCATGG | 2 cut(s) | 525, 1389 |
| Bsp68I | TCGCGA | 1 cut(s) | 518 |
| BspCNI | CTCAG | 5 cut(s) | 147, 165, 1281, 1288, 1588 |
| BspDI | ATCGAT | 1 cut(s) | 1445 |
| BspFNI | CGCG | 6 cut(s) | 375, 518, 607, 636, 702, 1308 |
| BspMAI | CTGCAG | 2 cut(s) | 1230, 1413 |
| BspOI | GCTAGC | 1 cut(s) | 1712 |
| BspPI | GGATC | 2 cut(s) | 462, 1739 |
| BspT107I | GGYRCC | 3 cut(s) | 601, 1385, 1421 |
| BspTNI | GGTCTC | 2 cut(s) | 316, 1646 |
| BsrBI | CCGCTC | 3 cut(s) | 850, 988, 1129 |
| BsrDI | GCAATG | 1 cut(s) | 1368 |
| BsrFI | RCCGGY | 3 cut(s) | 622, 1382, 1450 |
| BsrI | ACTGG | 7 cut(s) | 96, 197, 697, 1436, 1463, 1659, 1716 |
| BssAI | RCCGGY | 3 cut(s) | 622, 1382, 1450 |
| BssMI | GATC | 3 cut(s) | 454, 540, 1744 |
| BssNI | GRCGYC | 3 cut(s) | 510, 602, 965 |
| BssSI | CACGAG | 4 cut(s) | 357, 468, 769, 1101 |
| BssT1I | CCWWGG | 3 cut(s) | 525, 1074, 1389 |
| Bst2BI | CACGAG | 4 cut(s) | 357, 468, 769, 1101 |
| Bst2UI | CCWGG | 6 cut(s) | 779, 869, 959, 1040, 1512, 1619 |
| Bst4CI | ACNGT | 6 cut(s) | 64, 895, 1085, 1152, 1560, 1593 |
| Bst6I | CTCTTC | 2 cut(s) | 360, 666 |
| BstACI | GRCGYC | 3 cut(s) | 510, 602, 965 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 114 |
| BstDEI | CTNAG | 7 cut(s) | 134, 173, 995, 1203, 1289, 1296, 1575 |
| BstDSI | CCRYGG | 7 cut(s) | 63, 216, 525, 605, 681, 1323, 1389 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 294 |
| BstF5I | GGATG | 2 cut(s) | 682, 1645 |
| BstFNI | CGCG | 6 cut(s) | 375, 518, 607, 636, 702, 1308 |
| BstH2I | RGCGCY | 4 cut(s) | 155, 605, 623, 1296 |
| BstHHI | GCGC | 7 cut(s) | 108, 154, 604, 622, 636, 1295, 1310 |
| BstKTI | GATC | 3 cut(s) | 457, 543, 1747 |
| BstMAI | GTCTC | 2 cut(s) | 316, 1646 |
| BstMBI | GATC | 3 cut(s) | 454, 540, 1744 |
| BstMCI | CGRYCG | 3 cut(s) | 63, 1317, 1455 |
| BstNI | CCWGG | 6 cut(s) | 779, 869, 959, 1040, 1512, 1619 |
| BstNSI | RCATGY | 2 cut(s) | 1177, 1533 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1076 |
| BstSFI | CTRYAG | 2 cut(s) | 1226, 1409 |
| BstSLI | GKGCMC | 3 cut(s) | 700, 770, 930 |
| BstUI | CGCG | 6 cut(s) | 375, 518, 607, 636, 702, 1308 |
| BstV1I | GCAGC | 8 cut(s) | 35, 718, 1170, 1240, 1297, 1385, 1395, 1423 |
| BstZI | CGGCCG | 1 cut(s) | 1314 |
| Bsu15I | ATCGAT | 1 cut(s) | 1445 |
| Bsu36I | CCTNAGG | 1 cut(s) | 173 |
| BsuTUI | ATCGAT | 1 cut(s) | 1445 |
| BtgI | CCRYGG | 7 cut(s) | 63, 216, 525, 605, 681, 1323, 1389 |
| BtgZI | GCGATG | 1 cut(s) | 125 |
| BtrI | CACGTC | 1 cut(s) | 325 |
| BtsCI | GGATG | 2 cut(s) | 682, 1645 |
| BtsIMutI | CAGTG | 2 cut(s) | 1470, 1723 |
| BtuMI | TCGCGA | 1 cut(s) | 518 |
| CciNI | GCGGCCGC | 1 cut(s) | 1314 |
| CfoI | GCGC | 7 cut(s) | 108, 154, 604, 622, 636, 1295, 1310 |
| Cfr10I | RCCGGY | 3 cut(s) | 622, 1382, 1450 |
| Cfr42I | CCGCGG | 1 cut(s) | 608 |
| Cfr9I | CCCGGG | 1 cut(s) | 1632 |
| ClaI | ATCGAT | 1 cut(s) | 1445 |
| CseI | GACGC | 3 cut(s) | 518, 954, 1074 |
| Csp6I | GTAC | 8 cut(s) | 74, 232, 346, 565, 1351, 1422, 1491, 1644 |
| CviAII | CATG | 8 cut(s) | 184, 526, 533, 562, 947, 1174, 1390, 1530 |
| CviQI | GTAC | 8 cut(s) | 74, 232, 346, 565, 1351, 1422, 1491, 1644 |
| DdeI | CTNAG | 7 cut(s) | 134, 173, 995, 1203, 1289, 1296, 1575 |
| DinI | GGCGCC | 1 cut(s) | 603 |
| DpnI | GATC | 3 cut(s) | 456, 542, 1746 |
| DpnII | GATC | 3 cut(s) | 454, 540, 1744 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1659 |
| EaeI | YGGCCR | 3 cut(s) | 624, 1197, 1314 |
| EagI | CGGCCG | 1 cut(s) | 1314 |
| Eam1104I | CTCTTC | 2 cut(s) | 360, 666 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1659 |
| EarI | CTCTTC | 2 cut(s) | 360, 666 |
| EciI | GGCGGA | 7 cut(s) | 83, 304, 413, 415, 474, 1569, 1652 |
| EclXI | CGGCCG | 1 cut(s) | 1314 |
| Eco130I | CCWWGG | 3 cut(s) | 525, 1074, 1389 |
| Eco24I | GRGCYC | 1 cut(s) | 700 |
| Eco31I | GGTCTC | 2 cut(s) | 316, 1646 |
| Eco47I | GGWCC | 4 cut(s) | 56, 243, 529, 1677 |
| Eco47III | AGCGCT | 1 cut(s) | 1294 |
| Eco52I | CGGCCG | 1 cut(s) | 1314 |
| Eco57I | CTGAAG | 2 cut(s) | 731, 895 |
| Eco81I | CCTNAGG | 1 cut(s) | 173 |
| Eco88I | CYCGRG | 3 cut(s) | 734, 1632, 1671 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 294 |
| EcoO109I | RGGNCCY | 1 cut(s) | 696 |
| EcoRII | CCWGG | 6 cut(s) | 777, 867, 957, 1038, 1510, 1617 |
| EcoT14I | CCWWGG | 3 cut(s) | 525, 1074, 1389 |
| EcoT38I | GRGCYC | 1 cut(s) | 700 |
| EgeI | GGCGCC | 1 cut(s) | 603 |
| EheI | GGCGCC | 1 cut(s) | 603 |
| ErhI | CCWWGG | 3 cut(s) | 525, 1074, 1389 |
| FaeI | CATG | 8 cut(s) | 187, 529, 536, 565, 950, 1177, 1393, 1533 |
| FaqI | GGGAC | 6 cut(s) | 592, 1037, 1145, 1162, 1588, 1647 |
| FatI | CATG | 8 cut(s) | 183, 525, 532, 561, 946, 1173, 1389, 1529 |
| FblI | GTMKAC | 1 cut(s) | 1080 |
| FokI | GGATG | 2 cut(s) | 689, 1652 |
| FriOI | GRGCYC | 1 cut(s) | 700 |
| FspBI | CTAG | 1 cut(s) | 1709 |
| GlaI | GCGC | 7 cut(s) | 107, 153, 603, 621, 635, 1294, 1309 |
| GsaI | CCCAGC | 1 cut(s) | 1614 |
| GsuI | CTGGAG | 3 cut(s) | 646, 890, 1289 |
| HaeII | RGCGCY | 4 cut(s) | 155, 605, 623, 1296 |
| HapII | CCGG | 6 cut(s) | 435, 488, 623, 1383, 1451, 1633 |
| HgaI | GACGC | 3 cut(s) | 518, 954, 1074 |
| HhaI | GCGC | 7 cut(s) | 108, 154, 604, 622, 636, 1295, 1310 |
| Hin1I | GRCGYC | 3 cut(s) | 510, 602, 965 |
| Hin1II | CATG | 8 cut(s) | 187, 529, 536, 565, 950, 1177, 1393, 1533 |
| Hin6I | GCGC | 7 cut(s) | 106, 152, 602, 620, 634, 1293, 1308 |
| HinP1I | GCGC | 7 cut(s) | 106, 152, 602, 620, 634, 1293, 1308 |
| HincII | GTYRAC | 4 cut(s) | 130, 653, 898, 1081 |
| HindII | GTYRAC | 4 cut(s) | 130, 653, 898, 1081 |
| HpaI | GTTAAC | 1 cut(s) | 898 |
| HpaII | CCGG | 6 cut(s) | 435, 488, 623, 1383, 1451, 1633 |
| HphI | GGTGA | 7 cut(s) | 830, 830, 897, 1286, 1447, 1556, 1580 |
| Hpy166II | GTNNAC | 5 cut(s) | 130, 653, 821, 898, 1081 |
| Hpy188I | TCNGA | 6 cut(s) | 280, 810, 885, 1564, 1597, 1681 |
| Hpy188III | TCNNGA | 4 cut(s) | 359, 517, 969, 1336 |
| Hpy8I | GTNNAC | 5 cut(s) | 130, 653, 821, 898, 1081 |
| Hpy99I | CGWCG | 2 cut(s) | 265, 1068 |
| HpyCH4III | ACNGT | 6 cut(s) | 64, 895, 1085, 1152, 1560, 1593 |
| HpyCH4IV | ACGT | 3 cut(s) | 263, 324, 930 |
| HpyCH4V | TGCA | 6 cut(s) | 117, 935, 946, 1228, 1411, 1529 |
| HpyF3I | CTNAG | 7 cut(s) | 134, 173, 995, 1203, 1289, 1296, 1575 |
| HpySE526I | ACGT | 3 cut(s) | 263, 324, 930 |
| Hsp92I | GRCGYC | 3 cut(s) | 510, 602, 965 |
| Hsp92II | CATG | 8 cut(s) | 187, 529, 536, 565, 950, 1177, 1393, 1533 |
| HspAI | GCGC | 7 cut(s) | 106, 152, 602, 620, 634, 1293, 1308 |
| KasI | GGCGCC | 1 cut(s) | 601 |
| KpnI | GGTACC | 1 cut(s) | 1425 |
| KroI | GCCGGC | 1 cut(s) | 622 |
| KroNI | GCCGGC | 1 cut(s) | 624 |
| KspAI | GTTAAC | 1 cut(s) | 898 |
| KspI | CCGCGG | 1 cut(s) | 608 |
| Kzo9I | GATC | 3 cut(s) | 454, 540, 1744 |
| LmnI | GCTCC | 5 cut(s) | 745, 991, 1165, 1302, 1739 |
| Lsp1109I | GCAGC | 8 cut(s) | 35, 718, 1170, 1240, 1297, 1385, 1395, 1423 |
| LweI | GCATC | 5 cut(s) | 667, 1078, 1437, 1451, 1714 |
| MaeI | CTAG | 1 cut(s) | 1709 |
| MaeII | ACGT | 3 cut(s) | 263, 324, 930 |
| MaeIII | GTNAC | 3 cut(s) | 506, 773, 1568 |
| MalI | GATC | 3 cut(s) | 456, 542, 1746 |
| MbiI | CCGCTC | 3 cut(s) | 850, 988, 1129 |
| MboI | GATC | 3 cut(s) | 454, 540, 1744 |
| MboII | GAAGA | 3 cut(s) | 377, 683, 724 |
| MfeI | CAATTG | 1 cut(s) | 936 |
| MhlI | GDGCHC | 3 cut(s) | 700, 770, 930 |
| MluCI | AATT | 3 cut(s) | 270, 547, 936 |
| Mly113I | GGCGCC | 1 cut(s) | 602 |
| MlyI | GAGTC | 9 cut(s) | 349, 460, 653, 776, 1091, 1244, 1337, 1565, 1576 |
| MmeI | TCCRAC | 5 cut(s) | 258, 420, 1143, 1542, 1704 |
| MroNI | GCCGGC | 1 cut(s) | 622 |
| MseI | TTAA | 4 cut(s) | 24, 273, 897, 1521 |
| MspA1I | CMGCKG | 7 cut(s) | 463, 587, 607, 666, 709, 1231, 1579 |
| MspI | CCGG | 6 cut(s) | 435, 488, 623, 1383, 1451, 1633 |
| MunI | CAATTG | 1 cut(s) | 936 |
| MvaI | CCWGG | 6 cut(s) | 779, 869, 959, 1040, 1512, 1619 |
| MvnI | CGCG | 6 cut(s) | 375, 518, 607, 636, 702, 1308 |
| NaeI | GCCGGC | 1 cut(s) | 624 |
| NarI | GGCGCC | 1 cut(s) | 602 |
| NciI | CCSGG | 4 cut(s) | 436, 489, 1633, 1634 |
| NcoI | CCATGG | 2 cut(s) | 525, 1389 |
| NdeII | GATC | 3 cut(s) | 454, 540, 1744 |
| NgoMIV | GCCGGC | 1 cut(s) | 622 |
| NheI | GCTAGC | 1 cut(s) | 1708 |
| NlaIII | CATG | 8 cut(s) | 187, 529, 536, 565, 950, 1177, 1393, 1533 |
| NmeAIII | GCCGAG | 3 cut(s) | 562, 826, 1279 |
| NmuCI | GTSAC | 3 cut(s) | 506, 773, 1568 |
| NotI | GCGGCCGC | 1 cut(s) | 1314 |
| NruI | TCGCGA | 1 cut(s) | 518 |
| NspI | RCATGY | 2 cut(s) | 1177, 1533 |
| PaeI | GCATGC | 1 cut(s) | 1533 |
| PciI | ACATGT | 1 cut(s) | 1173 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 637 |
| PdiI | GCCGGC | 1 cut(s) | 624 |
| PfeI | GAWTC | 2 cut(s) | 179, 403 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1431 |
| PleI | GAGTC | 9 cut(s) | 349, 460, 653, 776, 1091, 1243, 1336, 1565, 1576 |
| PluTI | GGCGCC | 1 cut(s) | 605 |
| PpsI | GAGTC | 9 cut(s) | 349, 460, 653, 776, 1091, 1243, 1336, 1565, 1576 |
| PscI | ACATGT | 1 cut(s) | 1173 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1076 |
| Psp6I | CCWGG | 6 cut(s) | 777, 867, 957, 1038, 1510, 1617 |
| PspFI | CCCAGC | 1 cut(s) | 1610 |
| PspGI | CCWGG | 6 cut(s) | 777, 867, 957, 1038, 1510, 1617 |
| PspOMI | GGGCCC | 1 cut(s) | 696 |
| PstI | CTGCAG | 2 cut(s) | 1230, 1413 |
| PvuII | CAGCTG | 2 cut(s) | 463, 709 |
| RruI | TCGCGA | 1 cut(s) | 518 |
| RsaI | GTAC | 8 cut(s) | 75, 233, 347, 566, 1352, 1423, 1492, 1645 |
| RsaNI | GTAC | 8 cut(s) | 74, 232, 346, 565, 1351, 1422, 1491, 1644 |
| SacII | CCGCGG | 1 cut(s) | 608 |
| SalI | GTCGAC | 1 cut(s) | 1079 |
| SaqAI | TTAA | 4 cut(s) | 24, 273, 897, 1521 |
| Sau3AI | GATC | 3 cut(s) | 454, 540, 1744 |
| SchI | GAGTC | 9 cut(s) | 349, 460, 653, 776, 1091, 1244, 1337, 1565, 1576 |
| SduI | GDGCHC | 3 cut(s) | 700, 770, 930 |
| SfaNI | GCATC | 5 cut(s) | 667, 1078, 1437, 1451, 1714 |
| SfcI | CTRYAG | 2 cut(s) | 1226, 1409 |
| SfoI | GGCGCC | 1 cut(s) | 603 |
| Sfr303I | CCGCGG | 1 cut(s) | 608 |
| SgrBI | CCGCGG | 1 cut(s) | 608 |
| SinI | GGWCC | 4 cut(s) | 56, 243, 529, 1677 |
| SmaI | CCCGGG | 1 cut(s) | 1634 |
| SphI | GCATGC | 1 cut(s) | 1533 |
| Sse9I | AATT | 3 cut(s) | 270, 547, 936 |
| SspDI | GGCGCC | 1 cut(s) | 601 |
| SspMI | CTAG | 1 cut(s) | 1709 |
| StyI | CCWWGG | 3 cut(s) | 525, 1074, 1389 |
| TaaI | ACNGT | 6 cut(s) | 64, 895, 1085, 1152, 1560, 1593 |
| TaiI | ACGT | 3 cut(s) | 266, 327, 933 |
| TaqI | TCGA | 4 cut(s) | 295, 1080, 1428, 1445 |
| TaqII | GACCGA | 2 cut(s) | 73, 1382 |
| TasI | AATT | 3 cut(s) | 270, 547, 936 |
| TatI | WGTACW | 1 cut(s) | 1350 |
| TfiI | GAWTC | 2 cut(s) | 179, 403 |
| Tru1I | TTAA | 4 cut(s) | 24, 273, 897, 1521 |
| Tru9I | TTAA | 4 cut(s) | 24, 273, 897, 1521 |
| TscAI | CASTG | 2 cut(s) | 1470, 1723 |
| TseFI | GTSAC | 3 cut(s) | 506, 773, 1568 |
| TseI | GCWGC | 9 cut(s) | 13, 48, 706, 1183, 1228, 1310, 1373, 1408, 1411 |
| Tsp45I | GTSAC | 3 cut(s) | 506, 773, 1568 |
| TspDTI | ATGAA | 2 cut(s) | 828, 963 |
| TspGWI | ACGGA | 3 cut(s) | 233, 1105, 1156 |
| TspMI | CCCGGG | 1 cut(s) | 1632 |
| TspRI | CASTG | 2 cut(s) | 1470, 1723 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1431 |
| VpaK11BI | GGWCC | 4 cut(s) | 56, 243, 529, 1677 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 294 |
| XceI | RCATGY | 2 cut(s) | 1177, 1533 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1396 |
| XmaI | CCCGGG | 1 cut(s) | 1632 |
| XmiI | GTMKAC | 1 cut(s) | 1080 |
| XspI | CTAG | 1 cut(s) | 1709 |