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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 393, 545, 797 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 875 |
| AccBSI | CCGCTC | 3 cut(s) | 469, 648, 699 |
| AccII | CGCG | 2 cut(s) | 101, 432 |
| AclWI | GGATC | 2 cut(s) | 111, 698 |
| AcoI | YGGCCR | 2 cut(s) | 44, 534 |
| AcsI | RAATTY | 1 cut(s) | 766 |
| AcyI | GRCGYC | 2 cut(s) | 293, 602 |
| AfaI | GTAC | 1 cut(s) | 310 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 156, 403, 456, 484, 647, 875 |
| AgsI | TTSAA | 3 cut(s) | 15, 496, 571 |
| AjnI | CCWGG | 3 cut(s) | 285, 558, 849 |
| AleI | CACNNNNGTG | 2 cut(s) | 788, 803 |
| AluBI | AGCT | 6 cut(s) | 243, 355, 376, 439, 638, 668 |
| AluI | AGCT | 6 cut(s) | 243, 355, 376, 439, 638, 668 |
| Alw26I | GTCTC | 2 cut(s) | 347, 760 |
| AlwI | GGATC | 2 cut(s) | 111, 698 |
| AoxI | GGCC | 8 cut(s) | 44, 112, 122, 130, 139, 193, 534, 777 |
| ApeKI | GCWGC | 3 cut(s) | 419, 862, 890 |
| ApoI | RAATTY | 1 cut(s) | 766 |
| AspLEI | GCGC | 2 cut(s) | 33, 213 |
| AspS9I | GGNCC | 6 cut(s) | 82, 112, 131, 139, 460, 778 |
| AsuHPI | GGTGA | 4 cut(s) | 225, 704, 713, 890 |
| AvaII | GGWCC | 2 cut(s) | 82, 460 |
| AxyI | CCTNAGG | 1 cut(s) | 38 |
| BaeGI | GKGCMC | 2 cut(s) | 584, 900 |
| BalI | TGGCCA | 1 cut(s) | 46 |
| BanI | GGYRCC | 3 cut(s) | 393, 545, 797 |
| BanII | GRGCYC | 1 cut(s) | 61 |
| BauI | CACGAG | 1 cut(s) | 788 |
| BbvCI | CCTCAGC | 1 cut(s) | 669 |
| BbvI | GCAGC | 3 cut(s) | 406, 874, 877 |
| BccI | CCATC | 3 cut(s) | 520, 788, 869 |
| BceAI | ACGGC | 2 cut(s) | 467, 878 |
| BciT130I | CCWGG | 3 cut(s) | 287, 560, 851 |
| BclI | TGATCA | 1 cut(s) | 226 |
| BcoDI | GTCTC | 2 cut(s) | 347, 760 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 138 |
| BlpI | GCTNAGC | 1 cut(s) | 615 |
| Bme1390I | CCNGG | 3 cut(s) | 287, 560, 851 |
| Bme18I | GGWCC | 2 cut(s) | 82, 460 |
| BmgT120I | GGNCC | 6 cut(s) | 82, 112, 131, 139, 460, 778 |
| BmiI | GGNNCC | 6 cut(s) | 60, 395, 461, 547, 657, 799 |
| BmrFI | CCNGG | 3 cut(s) | 287, 560, 851 |
| BmrI | ACTGGG | 1 cut(s) | 601 |
| BmsI | GCATC | 2 cut(s) | 265, 415 |
| BmuI | ACTGGG | 1 cut(s) | 601 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 622, 654 |
| BpmI | CTGGAG | 2 cut(s) | 329, 398 |
| Bpu10I | CCTNAGC | 1 cut(s) | 669 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 615 |
| BpuEI | CTTGAG | 3 cut(s) | 218, 485, 648 |
| BsaHI | GRCGYC | 2 cut(s) | 293, 602 |
| BsaJI | CCNNGG | 7 cut(s) | 99, 115, 402, 430, 483, 537, 801 |
| BsaWI | WCCGGW | 1 cut(s) | 61 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 156, 403, 456, 484, 647, 875 |
| Bse118I | RCCGGY | 2 cut(s) | 128, 551 |
| Bse1I | ACTGG | 2 cut(s) | 607, 869 |
| Bse21I | CCTNAGG | 1 cut(s) | 38 |
| BseBI | CCWGG | 3 cut(s) | 287, 560, 851 |
| BseDI | CCNNGG | 7 cut(s) | 99, 115, 402, 430, 483, 537, 801 |
| BseGI | GGATG | 4 cut(s) | 388, 721, 799, 880 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 156, 403, 456, 484, 647, 875 |
| BseMII | CTCAG | 6 cut(s) | 29, 303, 606, 660, 696, 762 |
| BseNI | ACTGG | 2 cut(s) | 607, 869 |
| BseSI | GKGCMC | 2 cut(s) | 584, 900 |
| BseXI | GCAGC | 3 cut(s) | 406, 874, 877 |
| BseYI | CCCAGC | 2 cut(s) | 181, 355 |
| Bsh1236I | CGCG | 2 cut(s) | 101, 432 |
| Bsh1285I | CGRYCG | 1 cut(s) | 859 |
| BshFI | GGCC | 8 cut(s) | 46, 114, 124, 132, 141, 195, 536, 779 |
| BshNI | GGYRCC | 3 cut(s) | 393, 545, 797 |
| BsiEI | CGRYCG | 1 cut(s) | 859 |
| BsiSI | CCGG | 5 cut(s) | 62, 129, 552, 641, 710 |
| BslFI | GGGAC | 2 cut(s) | 473, 589 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 156, 403, 456, 484, 647, 875 |
| BsmAI | GTCTC | 2 cut(s) | 347, 760 |
| BsmFI | GGGAC | 2 cut(s) | 473, 589 |
| BsnI | GGCC | 8 cut(s) | 46, 114, 124, 132, 141, 195, 536, 779 |
| Bsp1286I | GDGCHC | 3 cut(s) | 61, 584, 900 |
| Bsp143I | GATC | 4 cut(s) | 103, 226, 703, 856 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 615 |
| Bsp19I | CCATGG | 1 cut(s) | 801 |
| BspANI | GGCC | 8 cut(s) | 46, 114, 124, 132, 141, 195, 536, 779 |
| BspCNI | CTCAG | 6 cut(s) | 30, 304, 607, 661, 695, 761 |
| BspFNI | CGCG | 2 cut(s) | 101, 432 |
| BspLI | GGNNCC | 6 cut(s) | 60, 395, 461, 547, 657, 799 |
| BspPI | GGATC | 2 cut(s) | 111, 698 |
| BspT107I | GGYRCC | 3 cut(s) | 393, 545, 797 |
| BsrBI | CCGCTC | 3 cut(s) | 469, 648, 699 |
| BsrFI | RCCGGY | 2 cut(s) | 128, 551 |
| BsrI | ACTGG | 2 cut(s) | 607, 869 |
| BssAI | RCCGGY | 2 cut(s) | 128, 551 |
| BssECI | CCNNGG | 7 cut(s) | 99, 115, 402, 430, 483, 537, 801 |
| BssMI | GATC | 4 cut(s) | 103, 226, 703, 856 |
| BssNI | GRCGYC | 2 cut(s) | 293, 602 |
| BssSI | CACGAG | 1 cut(s) | 788 |
| BssT1I | CCWWGG | 3 cut(s) | 402, 537, 801 |
| Bst2BI | CACGAG | 1 cut(s) | 788 |
| Bst2UI | CCWGG | 3 cut(s) | 287, 560, 851 |
| Bst4CI | ACNGT | 2 cut(s) | 501, 567 |
| BstACI | GRCGYC | 2 cut(s) | 293, 602 |
| BstDEI | CTNAG | 7 cut(s) | 38, 312, 323, 615, 669, 682, 748 |
| BstDSI | CCRYGG | 4 cut(s) | 99, 430, 483, 801 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 401 |
| BstF5I | GGATG | 4 cut(s) | 388, 721, 799, 880 |
| BstFNI | CGCG | 2 cut(s) | 101, 432 |
| BstHHI | GCGC | 2 cut(s) | 33, 213 |
| BstKTI | GATC | 4 cut(s) | 106, 229, 706, 859 |
| BstMAI | GTCTC | 2 cut(s) | 347, 760 |
| BstMBI | GATC | 4 cut(s) | 103, 226, 703, 856 |
| BstMCI | CGRYCG | 1 cut(s) | 859 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 138, 425, 539, 552, 625 |
| BstNI | CCWGG | 3 cut(s) | 287, 560, 851 |
| BstNSI | RCATGY | 1 cut(s) | 521 |
| BstSCI | CCNGG | 3 cut(s) | 285, 558, 849 |
| BstSLI | GKGCMC | 2 cut(s) | 584, 900 |
| BstUI | CGCG | 2 cut(s) | 101, 432 |
| BstV1I | GCAGC | 3 cut(s) | 406, 874, 877 |
| Bsu36I | CCTNAGG | 1 cut(s) | 38 |
| BsuRI | GGCC | 8 cut(s) | 46, 114, 124, 132, 141, 195, 536, 779 |
| BtgI | CCRYGG | 4 cut(s) | 99, 430, 483, 801 |
| BtgZI | GCGATG | 1 cut(s) | 536 |
| BtsCI | GGATG | 4 cut(s) | 388, 721, 799, 880 |
| BtsIMutI | CAGTG | 1 cut(s) | 876 |
| CfoI | GCGC | 2 cut(s) | 33, 213 |
| Cfr10I | RCCGGY | 2 cut(s) | 128, 551 |
| Cfr13I | GGNCC | 6 cut(s) | 82, 112, 131, 139, 460, 778 |
| Cfr42I | CCGCGG | 2 cut(s) | 102, 433 |
| CseI | GACGC | 4 cut(s) | 84, 282, 425, 591 |
| Csp6I | GTAC | 1 cut(s) | 309 |
| CviAII | CATG | 3 cut(s) | 518, 802, 827 |
| CviQI | GTAC | 1 cut(s) | 309 |
| DdeI | CTNAG | 7 cut(s) | 38, 312, 323, 615, 669, 682, 748 |
| DpnI | GATC | 4 cut(s) | 105, 228, 705, 858 |
| DpnII | GATC | 4 cut(s) | 103, 226, 703, 856 |
| EaeI | YGGCCR | 2 cut(s) | 44, 534 |
| EciI | GGCGGA | 1 cut(s) | 728 |
| Eco130I | CCWWGG | 3 cut(s) | 402, 537, 801 |
| Eco24I | GRGCYC | 1 cut(s) | 61 |
| Eco47I | GGWCC | 2 cut(s) | 82, 460 |
| Eco81I | CCTNAGG | 1 cut(s) | 38 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 401 |
| EcoO109I | RGGNCCY | 1 cut(s) | 460 |
| EcoRII | CCWGG | 3 cut(s) | 285, 558, 849 |
| EcoT14I | CCWWGG | 3 cut(s) | 402, 537, 801 |
| EcoT38I | GRGCYC | 1 cut(s) | 61 |
| ErhI | CCWWGG | 3 cut(s) | 402, 537, 801 |
| FaeI | CATG | 3 cut(s) | 521, 805, 830 |
| FaiI | YATR | 7 cut(s) | 174, 276, 452, 519, 773, 803, 828 |
| FaqI | GGGAC | 2 cut(s) | 473, 589 |
| FatI | CATG | 3 cut(s) | 517, 801, 826 |
| FauI | CCCGC | 4 cut(s) | 106, 157, 437, 487 |
| FbaI | TGATCA | 1 cut(s) | 226 |
| FokI | GGATG | 4 cut(s) | 395, 728, 806, 887 |
| FriOI | GRGCYC | 1 cut(s) | 61 |
| GlaI | GCGC | 2 cut(s) | 32, 212 |
| GsaI | CCCAGC | 2 cut(s) | 185, 359 |
| GsuI | CTGGAG | 2 cut(s) | 329, 398 |
| HaeIII | GGCC | 8 cut(s) | 46, 114, 124, 132, 141, 195, 536, 779 |
| HapII | CCGG | 5 cut(s) | 62, 129, 552, 641, 710 |
| HgaI | GACGC | 4 cut(s) | 84, 282, 425, 591 |
| HhaI | GCGC | 2 cut(s) | 33, 213 |
| Hin1I | GRCGYC | 2 cut(s) | 293, 602 |
| Hin1II | CATG | 3 cut(s) | 521, 805, 830 |
| Hin6I | GCGC | 2 cut(s) | 31, 211 |
| HinP1I | GCGC | 2 cut(s) | 31, 211 |
| HpaII | CCGG | 5 cut(s) | 62, 129, 552, 641, 710 |
| HphI | GGTGA | 4 cut(s) | 225, 704, 713, 890 |
| Hpy188I | TCNGA | 3 cut(s) | 685, 751, 835 |
| Hpy188III | TCNNGA | 3 cut(s) | 15, 72, 346 |
| Hpy99I | CGWCG | 2 cut(s) | 298, 419 |
| HpyAV | CCTTC | 2 cut(s) | 322, 571 |
| HpyCH4III | ACNGT | 2 cut(s) | 501, 567 |
| HpyCH4V | TGCA | 2 cut(s) | 727, 764 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 138, 425, 539, 552, 625 |
| HpyF3I | CTNAG | 7 cut(s) | 38, 312, 323, 615, 669, 682, 748 |
| Hsp92I | GRCGYC | 2 cut(s) | 293, 602 |
| Hsp92II | CATG | 3 cut(s) | 521, 805, 830 |
| HspAI | GCGC | 2 cut(s) | 31, 211 |
| KroI | GCCGGC | 1 cut(s) | 128 |
| KroNI | GCCGGC | 1 cut(s) | 130 |
| Ksp22I | TGATCA | 1 cut(s) | 226 |
| KspI | CCGCGG | 2 cut(s) | 102, 433 |
| Kzo9I | GATC | 4 cut(s) | 103, 226, 703, 856 |
| LmnI | GCTCC | 3 cut(s) | 64, 352, 643 |
| Lsp1109I | GCAGC | 3 cut(s) | 406, 874, 877 |
| LweI | GCATC | 2 cut(s) | 265, 415 |
| MaeIII | GTNAC | 1 cut(s) | 162 |
| MalI | GATC | 4 cut(s) | 105, 228, 705, 858 |
| MbiI | CCGCTC | 3 cut(s) | 469, 648, 699 |
| MboI | GATC | 4 cut(s) | 103, 226, 703, 856 |
| MboII | GAAGA | 1 cut(s) | 893 |
| MhlI | GDGCHC | 3 cut(s) | 61, 584, 900 |
| MlsI | TGGCCA | 1 cut(s) | 46 |
| MluCI | AATT | 1 cut(s) | 766 |
| MluNI | TGGCCA | 1 cut(s) | 46 |
| Mox20I | TGGCCA | 1 cut(s) | 46 |
| MroNI | GCCGGC | 1 cut(s) | 128 |
| MscI | TGGCCA | 1 cut(s) | 46 |
| MslI | CAYNNNNRTG | 2 cut(s) | 788, 803 |
| Msp20I | TGGCCA | 1 cut(s) | 46 |
| MspA1I | CMGCKG | 2 cut(s) | 101, 432 |
| MspI | CCGG | 5 cut(s) | 62, 129, 552, 641, 710 |
| MspR9I | CCNGG | 3 cut(s) | 287, 560, 851 |
| MvaI | CCWGG | 3 cut(s) | 287, 560, 851 |
| MvnI | CGCG | 2 cut(s) | 101, 432 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 138, 425, 539, 552, 625 |
| NaeI | GCCGGC | 1 cut(s) | 130 |
| NcoI | CCATGG | 1 cut(s) | 801 |
| NdeII | GATC | 4 cut(s) | 103, 226, 703, 856 |
| NgoMIV | GCCGGC | 1 cut(s) | 128 |
| NlaIII | CATG | 3 cut(s) | 521, 805, 830 |
| NlaIV | GGNNCC | 6 cut(s) | 60, 395, 461, 547, 657, 799 |
| NmeAIII | GCCGAG | 1 cut(s) | 140 |
| NspI | RCATGY | 1 cut(s) | 521 |
| OliI | CACNNNNGTG | 2 cut(s) | 788, 803 |
| PaeI | GCATGC | 1 cut(s) | 521 |
| PdiI | GCCGGC | 1 cut(s) | 130 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 875 |
| Ple19I | CGATCG | 1 cut(s) | 859 |
| PpuMI | RGGWCCY | 1 cut(s) | 460 |
| Psp5II | RGGWCCY | 1 cut(s) | 460 |
| Psp6I | CCWGG | 3 cut(s) | 285, 558, 849 |
| PspFI | CCCAGC | 2 cut(s) | 181, 355 |
| PspGI | CCWGG | 3 cut(s) | 285, 558, 849 |
| PspN4I | GGNNCC | 6 cut(s) | 60, 395, 461, 547, 657, 799 |
| PspPI | GGNCC | 6 cut(s) | 82, 112, 131, 139, 460, 778 |
| PspPPI | RGGWCCY | 1 cut(s) | 460 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 266, 298 |
| PvuI | CGATCG | 1 cut(s) | 859 |
| RsaI | GTAC | 1 cut(s) | 310 |
| RsaNI | GTAC | 1 cut(s) | 309 |
| RseI | CAYNNNNRTG | 2 cut(s) | 788, 803 |
| SacII | CCGCGG | 2 cut(s) | 102, 433 |
| Sau3AI | GATC | 4 cut(s) | 103, 226, 703, 856 |
| Sau96I | GGNCC | 6 cut(s) | 82, 112, 131, 139, 460, 778 |
| ScrFI | CCNGG | 3 cut(s) | 287, 560, 851 |
| SduI | GDGCHC | 3 cut(s) | 61, 584, 900 |
| SfaNI | GCATC | 2 cut(s) | 265, 415 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 138 |
| Sfr303I | CCGCGG | 2 cut(s) | 102, 433 |
| SgrBI | CCGCGG | 2 cut(s) | 102, 433 |
| SinI | GGWCC | 2 cut(s) | 82, 460 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 788, 803 |
| SmlI | CTYRAG | 3 cut(s) | 197, 464, 663 |
| SmoI | CTYRAG | 3 cut(s) | 197, 464, 663 |
| SphI | GCATGC | 1 cut(s) | 521 |
| Sse9I | AATT | 1 cut(s) | 766 |
| StyD4I | CCNGG | 3 cut(s) | 285, 558, 849 |
| StyI | CCWWGG | 3 cut(s) | 402, 537, 801 |
| TaaI | ACNGT | 2 cut(s) | 501, 567 |
| TaqI | TCGA | 4 cut(s) | 215, 245, 296, 855 |
| TasI | AATT | 1 cut(s) | 766 |
| TauI | GCSGC | 7 cut(s) | 181, 195, 293, 435, 536, 779, 849 |
| TscAI | CASTG | 1 cut(s) | 876 |
| TseI | GCWGC | 3 cut(s) | 419, 862, 890 |
| TspGWI | ACGGA | 1 cut(s) | 95 |
| TspRI | CASTG | 1 cut(s) | 876 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 875 |
| VpaK11BI | GGWCC | 2 cut(s) | 82, 460 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 401 |
| XapI | RAATTY | 1 cut(s) | 766 |
| XceI | RCATGY | 1 cut(s) | 521 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 373, 556 |