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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 493 |
| AccB1I | GGYRCC | 2 cut(s) | 373, 812 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 130, 902 |
| AccBSI | CCGCTC | 3 cut(s) | 191, 433, 685 |
| AccI | GTMKAC | 1 cut(s) | 578 |
| AccII | CGCG | 2 cut(s) | 23, 647 |
| AclI | AACGTT | 1 cut(s) | 672 |
| AclWI | GGATC | 1 cut(s) | 35 |
| AcoI | YGGCCR | 2 cut(s) | 18, 121 |
| AcsI | RAATTY | 1 cut(s) | 437 |
| AcyI | GRCGYC | 4 cut(s) | 134, 267, 575, 849 |
| AfaI | GTAC | 2 cut(s) | 779, 874 |
| AflIII | ACRYGT | 2 cut(s) | 645, 831 |
| AgsI | TTSAA | 3 cut(s) | 509, 763, 838 |
| AjnI | CCWGG | 2 cut(s) | 51, 922 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 428, 460 |
| AluBI | AGCT | 8 cut(s) | 329, 474, 525, 604, 619, 667, 788, 886 |
| AluI | AGCT | 8 cut(s) | 329, 474, 525, 604, 619, 667, 788, 886 |
| Alw21I | GWGCWC | 1 cut(s) | 217 |
| Alw26I | GTCTC | 1 cut(s) | 293 |
| AlwI | GGATC | 1 cut(s) | 35 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 517 |
| Ama87I | CYCGRG | 2 cut(s) | 428, 464 |
| AoxI | GGCC | 7 cut(s) | 18, 72, 121, 180, 233, 309, 730 |
| ApaI | GGGCCC | 1 cut(s) | 237 |
| ApeKI | GCWGC | 7 cut(s) | 25, 343, 553, 619, 707, 883, 886 |
| ApoI | RAATTY | 1 cut(s) | 437 |
| AspLEI | GCGC | 2 cut(s) | 25, 624 |
| AspS9I | GGNCC | 8 cut(s) | 73, 181, 233, 234, 309, 486, 730, 962 |
| AsuC2I | CCSGG | 2 cut(s) | 13, 77 |
| AsuHPI | GGTGA | 4 cut(s) | 70, 94, 158, 739 |
| AsuNHI | GCTAGC | 1 cut(s) | 604 |
| AvaI | CYCGRG | 2 cut(s) | 428, 464 |
| AvaII | GGWCC | 2 cut(s) | 486, 962 |
| BaeGI | GKGCMC | 1 cut(s) | 237 |
| BalI | TGGCCA | 1 cut(s) | 123 |
| BanI | GGYRCC | 2 cut(s) | 373, 812 |
| BanII | GRGCYC | 2 cut(s) | 65, 237 |
| Bbv12I | GWGCWC | 1 cut(s) | 217 |
| BbvI | GCAGC | 7 cut(s) | 37, 355, 540, 606, 694, 873, 895 |
| BccI | CCATC | 4 cut(s) | 311, 476, 493, 787 |
| BciT130I | CCWGG | 2 cut(s) | 53, 924 |
| BclI | TGATCA | 1 cut(s) | 916 |
| BcnI | CCSGG | 2 cut(s) | 13, 77 |
| BcoDI | GTCTC | 1 cut(s) | 293 |
| BfaI | CTAG | 3 cut(s) | 389, 605, 879 |
| BmcAI | AGTACT | 1 cut(s) | 874 |
| Bme1390I | CCNGG | 4 cut(s) | 13, 53, 77, 924 |
| Bme18I | GGWCC | 2 cut(s) | 486, 962 |
| BmeT110I | CYCGRG | 2 cut(s) | 428, 464 |
| BmgT120I | GGNCC | 8 cut(s) | 73, 181, 233, 234, 309, 486, 730, 962 |
| BmiI | GGNNCC | 9 cut(s) | 75, 183, 235, 236, 310, 375, 487, 731, 814 |
| BmrFI | CCNGG | 4 cut(s) | 13, 53, 77, 924 |
| BmrI | ACTGGG | 1 cut(s) | 868 |
| BmsI | GCATC | 2 cut(s) | 75, 643 |
| BmtI | GCTAGC | 1 cut(s) | 608 |
| BmuI | ACTGGG | 1 cut(s) | 868 |
| BoxI | GACNNNNGTC | 1 cut(s) | 960 |
| BpuMI | CCSGG | 2 cut(s) | 13, 77 |
| BsaAI | YACGTR | 1 cut(s) | 154 |
| BsaHI | GRCGYC | 4 cut(s) | 134, 267, 575, 849 |
| BsaI | GGTCTC | 1 cut(s) | 293 |
| BsaJI | CCNNGG | 7 cut(s) | 51, 75, 587, 630, 658, 738, 958 |
| BsaWI | WCCGGW | 1 cut(s) | 964 |
| Bse118I | RCCGGY | 1 cut(s) | 346 |
| Bse1I | ACTGG | 1 cut(s) | 863 |
| Bse3DI | GCAATG | 1 cut(s) | 949 |
| BseBI | CCWGG | 2 cut(s) | 53, 924 |
| BseDI | CCNNGG | 7 cut(s) | 51, 75, 587, 630, 658, 738, 958 |
| BseGI | GGATG | 3 cut(s) | 358, 487, 658 |
| BseMI | GCAATG | 1 cut(s) | 949 |
| BseMII | CTCAG | 3 cut(s) | 81, 714, 765 |
| BseNI | ACTGG | 1 cut(s) | 863 |
| BseRI | GAGGAG | 1 cut(s) | 311 |
| BseSI | GKGCMC | 1 cut(s) | 237 |
| BseXI | GCAGC | 7 cut(s) | 37, 355, 540, 606, 694, 873, 895 |
| BseYI | CCCAGC | 2 cut(s) | 365, 582 |
| Bsh1236I | CGCG | 2 cut(s) | 23, 647 |
| Bsh1285I | CGRYCG | 1 cut(s) | 497 |
| BshFI | GGCC | 7 cut(s) | 20, 74, 123, 182, 235, 311, 732 |
| BshNI | GGYRCC | 2 cut(s) | 373, 812 |
| BsiEI | CGRYCG | 1 cut(s) | 497 |
| BsiHKAI | GWGCWC | 1 cut(s) | 217 |
| BsiHKCI | CYCGRG | 2 cut(s) | 428, 464 |
| BsiSI | CCGG | 4 cut(s) | 12, 77, 347, 965 |
| BslFI | GGGAC | 2 cut(s) | 499, 754 |
| BsmAI | GTCTC | 1 cut(s) | 293 |
| BsmFI | GGGAC | 2 cut(s) | 499, 754 |
| BsnI | GGCC | 7 cut(s) | 20, 74, 123, 182, 235, 311, 732 |
| Bso31I | GGTCTC | 1 cut(s) | 293 |
| BsoBI | CYCGRG | 2 cut(s) | 428, 464 |
| Bsp120I | GGGCCC | 1 cut(s) | 233 |
| Bsp1286I | GDGCHC | 3 cut(s) | 65, 217, 237 |
| Bsp143I | GATC | 2 cut(s) | 40, 916 |
| Bsp19I | CCATGG | 1 cut(s) | 958 |
| BspANI | GGCC | 7 cut(s) | 20, 74, 123, 182, 235, 311, 732 |
| BspCNI | CTCAG | 3 cut(s) | 80, 715, 766 |
| BspFNI | CGCG | 2 cut(s) | 23, 647 |
| BspLI | GGNNCC | 9 cut(s) | 75, 183, 235, 236, 310, 375, 487, 731, 814 |
| BspOI | GCTAGC | 1 cut(s) | 608 |
| BspPI | GGATC | 1 cut(s) | 35 |
| BspT107I | GGYRCC | 2 cut(s) | 373, 812 |
| BspTNI | GGTCTC | 1 cut(s) | 293 |
| BsrBI | CCGCTC | 3 cut(s) | 191, 433, 685 |
| BsrDI | GCAATG | 1 cut(s) | 949 |
| BsrFI | RCCGGY | 1 cut(s) | 346 |
| BsrI | ACTGG | 1 cut(s) | 863 |
| BssAI | RCCGGY | 1 cut(s) | 346 |
| BssECI | CCNNGG | 7 cut(s) | 51, 75, 587, 630, 658, 738, 958 |
| BssMI | GATC | 2 cut(s) | 40, 916 |
| BssNI | GRCGYC | 4 cut(s) | 134, 267, 575, 849 |
| BssT1I | CCWWGG | 4 cut(s) | 587, 630, 738, 958 |
| Bst2UI | CCWGG | 2 cut(s) | 53, 924 |
| Bst4CI | ACNGT | 3 cut(s) | 490, 513, 751 |
| BstACI | GRCGYC | 4 cut(s) | 134, 267, 575, 849 |
| BstBAI | YACGTR | 1 cut(s) | 154 |
| BstC8I | GCNNGC | 7 cut(s) | 121, 313, 606, 665, 786, 897, 934 |
| BstDEI | CTNAG | 5 cut(s) | 67, 723, 774, 826, 978 |
| BstDSI | CCRYGG | 2 cut(s) | 658, 958 |
| BstF5I | GGATG | 3 cut(s) | 358, 487, 658 |
| BstFNI | CGCG | 2 cut(s) | 23, 647 |
| BstHHI | GCGC | 2 cut(s) | 25, 624 |
| BstKTI | GATC | 2 cut(s) | 43, 919 |
| BstMAI | GTCTC | 1 cut(s) | 293 |
| BstMBI | GATC | 2 cut(s) | 40, 916 |
| BstMCI | CGRYCG | 1 cut(s) | 497 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 188, 559, 653, 806, 815, 892 |
| BstNI | CCWGG | 2 cut(s) | 53, 924 |
| BstNSI | RCATGY | 2 cut(s) | 835, 936 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 960 |
| BstSCI | CCNGG | 4 cut(s) | 11, 51, 75, 922 |
| BstSLI | GKGCMC | 1 cut(s) | 237 |
| BstUI | CGCG | 2 cut(s) | 23, 647 |
| BstV1I | GCAGC | 7 cut(s) | 37, 355, 540, 606, 694, 873, 895 |
| BsuRI | GGCC | 7 cut(s) | 20, 74, 123, 182, 235, 311, 732 |
| BtgI | CCRYGG | 2 cut(s) | 658, 958 |
| BtsCI | GGATG | 3 cut(s) | 358, 487, 658 |
| BtsI | GCAGTG | 1 cut(s) | 260 |
| BtsIMutI | CAGTG | 2 cut(s) | 260, 912 |
| Cac8I | GCNNGC | 7 cut(s) | 121, 313, 606, 665, 786, 897, 934 |
| CaiI | CAGNNNCTG | 1 cut(s) | 517 |
| CfoI | GCGC | 2 cut(s) | 25, 624 |
| Cfr10I | RCCGGY | 1 cut(s) | 346 |
| Cfr13I | GGNCC | 8 cut(s) | 73, 181, 233, 234, 309, 486, 730, 962 |
| CseI | GACGC | 5 cut(s) | 123, 275, 564, 653, 838 |
| Csp6I | GTAC | 2 cut(s) | 778, 873 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 211, 246 |
| CviAII | CATG | 5 cut(s) | 557, 695, 832, 933, 959 |
| CviQI | GTAC | 2 cut(s) | 778, 873 |
| DdeI | CTNAG | 5 cut(s) | 67, 723, 774, 826, 978 |
| DpnI | GATC | 2 cut(s) | 42, 918 |
| DpnII | GATC | 2 cut(s) | 40, 916 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 493 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 493 |
| EaeI | YGGCCR | 2 cut(s) | 18, 121 |
| EciI | GGCGGA | 1 cut(s) | 815 |
| Eco130I | CCWWGG | 4 cut(s) | 587, 630, 738, 958 |
| Eco24I | GRGCYC | 2 cut(s) | 65, 237 |
| Eco31I | GGTCTC | 1 cut(s) | 293 |
| Eco47I | GGWCC | 2 cut(s) | 486, 962 |
| Eco88I | CYCGRG | 2 cut(s) | 428, 464 |
| EcoO109I | RGGNCCY | 3 cut(s) | 73, 181, 234 |
| EcoRI | GAATTC | 1 cut(s) | 437 |
| EcoRII | CCWGG | 2 cut(s) | 51, 922 |
| EcoT14I | CCWWGG | 4 cut(s) | 587, 630, 738, 958 |
| EcoT38I | GRGCYC | 2 cut(s) | 65, 237 |
| ErhI | CCWWGG | 4 cut(s) | 587, 630, 738, 958 |
| FaeI | CATG | 5 cut(s) | 560, 698, 835, 936, 962 |
| FaiI | YATR | 8 cut(s) | 6, 408, 558, 642, 696, 833, 934, 960 |
| FaqI | GGGAC | 2 cut(s) | 499, 754 |
| FatI | CATG | 5 cut(s) | 556, 694, 831, 932, 958 |
| FauI | CCCGC | 4 cut(s) | 124, 193, 426, 892 |
| FbaI | TGATCA | 1 cut(s) | 916 |
| FblI | GTMKAC | 1 cut(s) | 578 |
| FokI | GGATG | 3 cut(s) | 365, 494, 665 |
| FriOI | GRGCYC | 2 cut(s) | 65, 237 |
| FspBI | CTAG | 3 cut(s) | 389, 605, 879 |
| GlaI | GCGC | 2 cut(s) | 24, 623 |
| GsaI | CCCAGC | 2 cut(s) | 369, 586 |
| HaeIII | GGCC | 7 cut(s) | 20, 74, 123, 182, 235, 311, 732 |
| HapII | CCGG | 4 cut(s) | 12, 77, 347, 965 |
| HgaI | GACGC | 5 cut(s) | 123, 275, 564, 653, 838 |
| HhaI | GCGC | 2 cut(s) | 25, 624 |
| Hin1I | GRCGYC | 4 cut(s) | 134, 267, 575, 849 |
| Hin1II | CATG | 5 cut(s) | 560, 698, 835, 936, 962 |
| Hin6I | GCGC | 2 cut(s) | 23, 622 |
| HinP1I | GCGC | 2 cut(s) | 23, 622 |
| HincII | GTYRAC | 2 cut(s) | 579, 823 |
| HindII | GTYRAC | 2 cut(s) | 579, 823 |
| HinfI | GANTC | 2 cut(s) | 392, 974 |
| HpaI | GTTAAC | 1 cut(s) | 823 |
| HpaII | CCGG | 4 cut(s) | 12, 77, 347, 965 |
| HphI | GGTGA | 4 cut(s) | 70, 94, 158, 739 |
| Hpy166II | GTNNAC | 2 cut(s) | 579, 823 |
| Hpy188I | TCNGA | 3 cut(s) | 70, 536, 792 |
| Hpy188III | TCNNGA | 2 cut(s) | 389, 428 |
| Hpy8I | GTNNAC | 2 cut(s) | 579, 823 |
| Hpy99I | CGWCG | 3 cut(s) | 296, 343, 580 |
| HpyAV | CCTTC | 5 cut(s) | 199, 235, 692, 799, 838 |
| HpyCH4III | ACNGT | 3 cut(s) | 490, 513, 751 |
| HpyCH4IV | ACGT | 3 cut(s) | 153, 338, 672 |
| HpyCH4V | TGCA | 3 cut(s) | 157, 556, 932 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 188, 559, 653, 806, 815, 892 |
| HpyF3I | CTNAG | 5 cut(s) | 67, 723, 774, 826, 978 |
| HpySE526I | ACGT | 3 cut(s) | 153, 338, 672 |
| Hsp92I | GRCGYC | 4 cut(s) | 134, 267, 575, 849 |
| Hsp92II | CATG | 5 cut(s) | 560, 698, 835, 936, 962 |
| HspAI | GCGC | 2 cut(s) | 23, 622 |
| Ksp22I | TGATCA | 1 cut(s) | 916 |
| KspAI | GTTAAC | 1 cut(s) | 823 |
| Kzo9I | GATC | 2 cut(s) | 40, 916 |
| LmnI | GCTCC | 2 cut(s) | 174, 196 |
| Lsp1109I | GCAGC | 7 cut(s) | 37, 355, 540, 606, 694, 873, 895 |
| LweI | GCATC | 2 cut(s) | 75, 643 |
| MaeI | CTAG | 3 cut(s) | 389, 605, 879 |
| MaeII | ACGT | 3 cut(s) | 153, 338, 672 |
| MaeIII | GTNAC | 3 cut(s) | 146, 745, 953 |
| MalI | GATC | 2 cut(s) | 42, 918 |
| MbiI | CCGCTC | 3 cut(s) | 191, 433, 685 |
| MboI | GATC | 2 cut(s) | 40, 916 |
| MboII | GAAGA | 2 cut(s) | 290, 334 |
| MhlI | GDGCHC | 3 cut(s) | 65, 217, 237 |
| MlsI | TGGCCA | 1 cut(s) | 123 |
| MluCI | AATT | 1 cut(s) | 437 |
| MluI | ACGCGT | 1 cut(s) | 645 |
| MluNI | TGGCCA | 1 cut(s) | 123 |
| MlyI | GAGTC | 1 cut(s) | 386 |
| MmeI | TCCRAC | 4 cut(s) | 148, 459, 630, 696 |
| Mox20I | TGGCCA | 1 cut(s) | 123 |
| MscI | TGGCCA | 1 cut(s) | 123 |
| MseI | TTAA | 2 cut(s) | 626, 822 |
| Msp20I | TGGCCA | 1 cut(s) | 123 |
| MspA1I | CMGCKG | 5 cut(s) | 119, 474, 818, 886, 899 |
| MspI | CCGG | 4 cut(s) | 12, 77, 347, 965 |
| MspR9I | CCNGG | 4 cut(s) | 13, 53, 77, 924 |
| MvaI | CCWGG | 2 cut(s) | 53, 924 |
| MvnI | CGCG | 2 cut(s) | 23, 647 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 188, 559, 653, 806, 815, 892 |
| NciI | CCSGG | 2 cut(s) | 13, 77 |
| NcoI | CCATGG | 1 cut(s) | 958 |
| NdeII | GATC | 2 cut(s) | 40, 916 |
| NheI | GCTAGC | 1 cut(s) | 604 |
| NlaIII | CATG | 5 cut(s) | 560, 698, 835, 936, 962 |
| NlaIV | GGNNCC | 9 cut(s) | 75, 183, 235, 236, 310, 375, 487, 731, 814 |
| NmeAIII | GCCGAG | 1 cut(s) | 506 |
| NmuCI | GTSAC | 3 cut(s) | 146, 745, 953 |
| NspI | RCATGY | 2 cut(s) | 835, 936 |
| PaeI | GCATGC | 1 cut(s) | 936 |
| PaeR7I | CTCGAG | 1 cut(s) | 464 |
| PciI | ACATGT | 1 cut(s) | 831 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 945 |
| PfeI | GAWTC | 1 cut(s) | 974 |
| PflFI | GACNNNGTC | 1 cut(s) | 860 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 130, 902 |
| PleI | GAGTC | 1 cut(s) | 386 |
| PpsI | GAGTC | 1 cut(s) | 386 |
| Ppu21I | YACGTR | 1 cut(s) | 154 |
| PscI | ACATGT | 1 cut(s) | 831 |
| PshAI | GACNNNNGTC | 1 cut(s) | 960 |
| Psp1406I | AACGTT | 1 cut(s) | 672 |
| Psp6I | CCWGG | 2 cut(s) | 51, 922 |
| PspFI | CCCAGC | 2 cut(s) | 365, 582 |
| PspGI | CCWGG | 2 cut(s) | 51, 922 |
| PspN4I | GGNNCC | 9 cut(s) | 75, 183, 235, 236, 310, 375, 487, 731, 814 |
| PspOMI | GGGCCC | 1 cut(s) | 233 |
| PspPI | GGNCC | 8 cut(s) | 73, 181, 233, 234, 309, 486, 730, 962 |
| PspXI | VCTCGAGB | 1 cut(s) | 464 |
| PstNI | CAGNNNCTG | 1 cut(s) | 517 |
| PsyI | GACNNNGTC | 1 cut(s) | 860 |
| PvuII | CAGCTG | 2 cut(s) | 474, 886 |
| RsaI | GTAC | 2 cut(s) | 779, 874 |
| RsaNI | GTAC | 2 cut(s) | 778, 873 |
| SalI | GTCGAC | 1 cut(s) | 577 |
| SaqAI | TTAA | 2 cut(s) | 626, 822 |
| Sau3AI | GATC | 2 cut(s) | 40, 916 |
| Sau96I | GGNCC | 8 cut(s) | 73, 181, 233, 234, 309, 486, 730, 962 |
| ScaI | AGTACT | 1 cut(s) | 874 |
| SchI | GAGTC | 1 cut(s) | 386 |
| ScrFI | CCNGG | 4 cut(s) | 13, 53, 77, 924 |
| SduI | GDGCHC | 3 cut(s) | 65, 217, 237 |
| SfaNI | GCATC | 2 cut(s) | 75, 643 |
| Sfr274I | CTCGAG | 1 cut(s) | 464 |
| SinI | GGWCC | 2 cut(s) | 486, 962 |
| SlaI | CTCGAG | 1 cut(s) | 464 |
| SmlI | CTYRAG | 1 cut(s) | 464 |
| SmoI | CTYRAG | 1 cut(s) | 464 |
| SphI | GCATGC | 1 cut(s) | 936 |
| Sse9I | AATT | 1 cut(s) | 437 |
| SspMI | CTAG | 3 cut(s) | 389, 605, 879 |
| StyD4I | CCNGG | 4 cut(s) | 11, 51, 75, 922 |
| StyI | CCWWGG | 4 cut(s) | 587, 630, 738, 958 |
| TaaI | ACNGT | 3 cut(s) | 490, 513, 751 |
| TaiI | ACGT | 3 cut(s) | 156, 341, 675 |
| TaqI | TCGA | 5 cut(s) | 141, 465, 497, 578, 615 |
| TaqII | GACCGA | 1 cut(s) | 483 |
| TasI | AATT | 1 cut(s) | 437 |
| TatI | WGTACW | 2 cut(s) | 777, 872 |
| TauI | GCSGC | 5 cut(s) | 23, 191, 379, 575, 818 |
| TfiI | GAWTC | 1 cut(s) | 974 |
| Tru1I | TTAA | 2 cut(s) | 626, 822 |
| Tru9I | TTAA | 2 cut(s) | 626, 822 |
| TscAI | CASTG | 2 cut(s) | 260, 919 |
| TseFI | GTSAC | 3 cut(s) | 146, 745, 953 |
| TseI | GCWGC | 7 cut(s) | 25, 343, 553, 619, 707, 883, 886 |
| Tsp45I | GTSAC | 3 cut(s) | 146, 745, 953 |
| TspDTI | ATGAA | 1 cut(s) | 711 |
| TspRI | CASTG | 2 cut(s) | 260, 919 |
| Tth111I | GACNNNGTC | 1 cut(s) | 860 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 130, 902 |
| VpaK11BI | GGWCC | 2 cut(s) | 486, 962 |
| XapI | RAATTY | 1 cut(s) | 437 |
| XbaI | TCTAGA | 1 cut(s) | 388 |
| XceI | RCATGY | 2 cut(s) | 835, 936 |
| XhoI | CTCGAG | 1 cut(s) | 464 |
| XmiI | GTMKAC | 1 cut(s) | 578 |
| XspI | CTAG | 3 cut(s) | 389, 605, 879 |
| ZrmI | AGTACT | 1 cut(s) | 874 |