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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 565 |
| Acc65I | GGTACC | 1 cut(s) | 338 |
| AccB1I | GGYRCC | 3 cut(s) | 338, 739, 1746 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 159, 813 |
| AccBSI | CCGCTC | 2 cut(s) | 1669, 1744 |
| AccI | GTMKAC | 4 cut(s) | 317, 1149, 1347, 1380 |
| AccII | CGCG | 3 cut(s) | 344, 900, 1785 |
| AclWI | GGATC | 2 cut(s) | 919, 932 |
| AcoI | YGGCCR | 1 cut(s) | 375 |
| AcsI | RAATTY | 3 cut(s) | 554, 846, 1502 |
| AcuI | CTGAAG | 1 cut(s) | 1682 |
| AcyI | GRCGYC | 2 cut(s) | 740, 1747 |
| AfaI | GTAC | 3 cut(s) | 340, 686, 1025 |
| AgsI | TTSAA | 2 cut(s) | 24, 763 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 772 |
| AjnI | CCWGG | 9 cut(s) | 38, 158, 320, 412, 732, 779, 915, 1101, 1659 |
| AleI | CACNNNNGTG | 1 cut(s) | 622 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 974, 1006 |
| Alw21I | GWGCWC | 1 cut(s) | 1624 |
| Alw26I | GTCTC | 3 cut(s) | 1123, 1382, 1709 |
| AlwI | GGATC | 2 cut(s) | 919, 932 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1660 |
| ApaI | GGGCCC | 1 cut(s) | 1577 |
| ApoI | RAATTY | 3 cut(s) | 554, 846, 1502 |
| Asp718I | GGTACC | 1 cut(s) | 338 |
| AspLEI | GCGC | 7 cut(s) | 263, 610, 696, 742, 885, 1282, 1749 |
| AsuC2I | CCSGG | 1 cut(s) | 1039 |
| AsuHPI | GGTGA | 5 cut(s) | 41, 298, 719, 768, 1450 |
| AsuII | TTCGAA | 1 cut(s) | 123 |
| AsuNHI | GCTAGC | 2 cut(s) | 5, 266 |
| AvaII | GGWCC | 3 cut(s) | 789, 1079, 1399 |
| BaeGI | GKGCMC | 2 cut(s) | 1577, 1611 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 330, 363 |
| BamHI | GGATCC | 1 cut(s) | 924 |
| BanI | GGYRCC | 3 cut(s) | 338, 739, 1746 |
| BanII | GRGCYC | 1 cut(s) | 1577 |
| BauI | CACGAG | 1 cut(s) | 488 |
| BbsI | GAAGAC | 2 cut(s) | 1145, 1688 |
| Bbv12I | GWGCWC | 1 cut(s) | 1624 |
| BccI | CCATC | 4 cut(s) | 275, 329, 598, 1183 |
| BceAI | ACGGC | 4 cut(s) | 365, 403, 984, 1787 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1598, 1632 |
| BciT130I | CCWGG | 9 cut(s) | 40, 160, 322, 414, 734, 781, 917, 1103, 1661 |
| BcnI | CCSGG | 1 cut(s) | 1039 |
| BcoDI | GTCTC | 3 cut(s) | 1123, 1382, 1709 |
| BfaI | CTAG | 5 cut(s) | 6, 131, 201, 267, 1122 |
| BfmI | CTRYAG | 4 cut(s) | 105, 886, 1557, 1591 |
| BfoI | RGCGCY | 4 cut(s) | 611, 697, 743, 1750 |
| BfuAI | ACCTGC | 1 cut(s) | 565 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 472 |
| Bme18I | GGWCC | 3 cut(s) | 789, 1079, 1399 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 772 |
| BmrI | ACTGGG | 1 cut(s) | 1370 |
| BmsI | GCATC | 7 cut(s) | 149, 205, 570, 692, 1726, 1759, 1768 |
| BmtI | GCTAGC | 2 cut(s) | 9, 270 |
| BmuI | ACTGGG | 1 cut(s) | 1370 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1145 |
| BpiI | GAAGAC | 2 cut(s) | 1145, 1688 |
| BpmI | CTGGAG | 3 cut(s) | 521, 1124, 1278 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1518, 1676 |
| Bpu14I | TTCGAA | 1 cut(s) | 123 |
| BpuMI | CCSGG | 1 cut(s) | 1039 |
| BsaAI | YACGTR | 1 cut(s) | 688 |
| BsaHI | GRCGYC | 2 cut(s) | 740, 1747 |
| BsaI | GGTCTC | 2 cut(s) | 1382, 1709 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1016, 1046, 1097, 1127 |
| Bse118I | RCCGGY | 2 cut(s) | 809, 974 |
| Bse1I | ACTGG | 3 cut(s) | 1167, 1283, 1376 |
| Bse3DI | GCAATG | 3 cut(s) | 135, 521, 1273 |
| BseBI | CCWGG | 9 cut(s) | 40, 160, 322, 414, 734, 781, 917, 1103, 1661 |
| BseGI | GGATG | 4 cut(s) | 220, 707, 1741, 1819 |
| BseMI | GCAATG | 3 cut(s) | 135, 521, 1273 |
| BseMII | CTCAG | 5 cut(s) | 183, 343, 713, 1509, 1690 |
| BseNI | ACTGG | 3 cut(s) | 1167, 1283, 1376 |
| BseRI | GAGGAG | 2 cut(s) | 1400, 1697 |
| BseSI | GKGCMC | 2 cut(s) | 1577, 1611 |
| BseYI | CCCAGC | 3 cut(s) | 813, 978, 1451 |
| BsgI | GTGCAG | 3 cut(s) | 650, 1265, 1307 |
| Bsh1236I | CGCG | 3 cut(s) | 344, 900, 1785 |
| Bsh1285I | CGRYCG | 1 cut(s) | 434 |
| BshNI | GGYRCC | 3 cut(s) | 338, 739, 1746 |
| BsiEI | CGRYCG | 1 cut(s) | 434 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1624 |
| BsiSI | CCGG | 5 cut(s) | 810, 975, 1038, 1308, 1457 |
| BslFI | GGGAC | 2 cut(s) | 802, 1256 |
| BsmAI | GTCTC | 3 cut(s) | 1123, 1382, 1709 |
| BsmFI | GGGAC | 2 cut(s) | 802, 1256 |
| Bso31I | GGTCTC | 2 cut(s) | 1382, 1709 |
| Bsp119I | TTCGAA | 1 cut(s) | 123 |
| Bsp120I | GGGCCC | 1 cut(s) | 1573 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1577, 1611, 1624 |
| Bsp1407I | TGTACA | 1 cut(s) | 1023 |
| Bsp143I | GATC | 4 cut(s) | 495, 750, 924, 1686 |
| Bsp19I | CCATGG | 2 cut(s) | 171, 1075 |
| Bsp68I | TCGCGA | 1 cut(s) | 900 |
| BspCNI | CTCAG | 5 cut(s) | 184, 342, 714, 1510, 1689 |
| BspFNI | CGCG | 3 cut(s) | 344, 900, 1785 |
| BspMAI | CTGCAG | 1 cut(s) | 109 |
| BspMI | ACCTGC | 1 cut(s) | 565 |
| BspOI | GCTAGC | 2 cut(s) | 9, 270 |
| BspPI | GGATC | 2 cut(s) | 919, 932 |
| BspT104I | TTCGAA | 1 cut(s) | 123 |
| BspT107I | GGYRCC | 3 cut(s) | 338, 739, 1746 |
| BspTNI | GGTCTC | 2 cut(s) | 1382, 1709 |
| BsrBI | CCGCTC | 2 cut(s) | 1669, 1744 |
| BsrDI | GCAATG | 3 cut(s) | 135, 521, 1273 |
| BsrFI | RCCGGY | 2 cut(s) | 809, 974 |
| BsrGI | TGTACA | 1 cut(s) | 1023 |
| BsrI | ACTGG | 3 cut(s) | 1167, 1283, 1376 |
| BssAI | RCCGGY | 2 cut(s) | 809, 974 |
| BssMI | GATC | 4 cut(s) | 495, 750, 924, 1686 |
| BssNAI | GTATAC | 1 cut(s) | 1348 |
| BssNI | GRCGYC | 2 cut(s) | 740, 1747 |
| BssSI | CACGAG | 1 cut(s) | 488 |
| BssT1I | CCWWGG | 6 cut(s) | 171, 697, 1075, 1351, 1719, 1755 |
| Bst1107I | GTATAC | 1 cut(s) | 1348 |
| Bst2BI | CACGAG | 1 cut(s) | 488 |
| Bst2UI | CCWGG | 9 cut(s) | 40, 160, 322, 414, 734, 781, 917, 1103, 1661 |
| Bst4CI | ACNGT | 6 cut(s) | 373, 652, 987, 1444, 1727, 1798 |
| Bst6I | CTCTTC | 1 cut(s) | 900 |
| BstACI | GRCGYC | 2 cut(s) | 740, 1747 |
| BstAUI | TGTACA | 1 cut(s) | 1023 |
| BstBAI | YACGTR | 1 cut(s) | 688 |
| BstBI | TTCGAA | 1 cut(s) | 123 |
| BstDEI | CTNAG | 6 cut(s) | 192, 329, 722, 1179, 1518, 1676 |
| BstDSI | CCRYGG | 7 cut(s) | 171, 342, 651, 928, 1075, 1239, 1783 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 859, 1754 |
| BstF5I | GGATG | 4 cut(s) | 220, 707, 1741, 1819 |
| BstFNI | CGCG | 3 cut(s) | 344, 900, 1785 |
| BstH2I | RGCGCY | 4 cut(s) | 611, 697, 743, 1750 |
| BstHHI | GCGC | 7 cut(s) | 263, 610, 696, 742, 885, 1282, 1749 |
| BstKTI | GATC | 4 cut(s) | 498, 753, 927, 1689 |
| BstMAI | GTCTC | 3 cut(s) | 1123, 1382, 1709 |
| BstMBI | GATC | 4 cut(s) | 495, 750, 924, 1686 |
| BstMCI | CGRYCG | 1 cut(s) | 434 |
| BstNI | CCWGG | 9 cut(s) | 40, 160, 322, 414, 734, 781, 917, 1103, 1661 |
| BstNSI | RCATGY | 1 cut(s) | 479 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1145 |
| BstSFI | CTRYAG | 4 cut(s) | 105, 886, 1557, 1591 |
| BstSLI | GKGCMC | 2 cut(s) | 1577, 1611 |
| BstUI | CGCG | 3 cut(s) | 344, 900, 1785 |
| BstV2I | GAAGAC | 2 cut(s) | 1145, 1688 |
| BstX2I | RGATCY | 1 cut(s) | 924 |
| BstYI | RGATCY | 1 cut(s) | 924 |
| BstZ17I | GTATAC | 1 cut(s) | 1348 |
| BtgI | CCRYGG | 7 cut(s) | 171, 342, 651, 928, 1075, 1239, 1783 |
| BtgZI | GCGATG | 2 cut(s) | 126, 348 |
| BtsCI | GGATG | 4 cut(s) | 220, 707, 1741, 1819 |
| BtsIMutI | CAGTG | 1 cut(s) | 1290 |
| BtuMI | TCGCGA | 1 cut(s) | 900 |
| BveI | ACCTGC | 1 cut(s) | 565 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1660 |
| CfoI | GCGC | 7 cut(s) | 263, 610, 696, 742, 885, 1282, 1749 |
| Cfr10I | RCCGGY | 2 cut(s) | 809, 974 |
| Cfr42I | CCGCGG | 2 cut(s) | 345, 1786 |
| CseI | GACGC | 2 cut(s) | 80, 444 |
| Csp6I | GTAC | 3 cut(s) | 339, 685, 1024 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 354, 389 |
| CviAII | CATG | 6 cut(s) | 172, 476, 772, 1076, 1201, 1628 |
| CviQI | GTAC | 3 cut(s) | 339, 685, 1024 |
| DdeI | CTNAG | 6 cut(s) | 192, 329, 722, 1179, 1518, 1676 |
| DinI | GGCGCC | 2 cut(s) | 741, 1748 |
| DpnI | GATC | 4 cut(s) | 497, 752, 926, 1688 |
| DpnII | GATC | 4 cut(s) | 495, 750, 924, 1686 |
| DriI | GACNNNNNGTC | 1 cut(s) | 772 |
| EaeI | YGGCCR | 1 cut(s) | 375 |
| Eam1104I | CTCTTC | 1 cut(s) | 900 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 772 |
| EarI | CTCTTC | 1 cut(s) | 900 |
| EciI | GGCGGA | 7 cut(s) | 80, 395, 671, 953, 1024, 1391, 1727 |
| Eco130I | CCWWGG | 6 cut(s) | 171, 697, 1075, 1351, 1719, 1755 |
| Eco24I | GRGCYC | 1 cut(s) | 1577 |
| Eco31I | GGTCTC | 2 cut(s) | 1382, 1709 |
| Eco47I | GGWCC | 3 cut(s) | 789, 1079, 1399 |
| Eco57I | CTGAAG | 1 cut(s) | 1682 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 859, 1754 |
| EcoO109I | RGGNCCY | 2 cut(s) | 789, 1426 |
| EcoRI | GAATTC | 2 cut(s) | 846, 1502 |
| EcoRII | CCWGG | 9 cut(s) | 38, 158, 320, 412, 732, 779, 915, 1101, 1659 |
| EcoT14I | CCWWGG | 6 cut(s) | 171, 697, 1075, 1351, 1719, 1755 |
| EcoT38I | GRGCYC | 1 cut(s) | 1577 |
| EgeI | GGCGCC | 2 cut(s) | 741, 1748 |
| EheI | GGCGCC | 2 cut(s) | 741, 1748 |
| ErhI | CCWWGG | 6 cut(s) | 171, 697, 1075, 1351, 1719, 1755 |
| FaeI | CATG | 6 cut(s) | 175, 479, 775, 1079, 1204, 1631 |
| FaqI | GGGAC | 2 cut(s) | 802, 1256 |
| FatI | CATG | 6 cut(s) | 171, 475, 771, 1075, 1200, 1627 |
| FauI | CCCGC | 6 cut(s) | 228, 349, 463, 820, 1243, 1790 |
| FauNDI | CATATG | 1 cut(s) | 1495 |
| FblI | GTMKAC | 4 cut(s) | 317, 1149, 1347, 1380 |
| FokI | GGATG | 3 cut(s) | 227, 714, 1748 |
| FriOI | GRGCYC | 1 cut(s) | 1577 |
| FspBI | CTAG | 5 cut(s) | 6, 131, 201, 267, 1122 |
| GlaI | GCGC | 7 cut(s) | 262, 609, 695, 741, 884, 1281, 1748 |
| GsaI | CCCAGC | 3 cut(s) | 817, 982, 1455 |
| GsuI | CTGGAG | 3 cut(s) | 521, 1124, 1278 |
| HaeII | RGCGCY | 4 cut(s) | 611, 697, 743, 1750 |
| HapII | CCGG | 5 cut(s) | 810, 975, 1038, 1308, 1457 |
| HgaI | GACGC | 2 cut(s) | 80, 444 |
| HhaI | GCGC | 7 cut(s) | 263, 610, 696, 742, 885, 1282, 1749 |
| Hin1I | GRCGYC | 2 cut(s) | 740, 1747 |
| Hin1II | CATG | 6 cut(s) | 175, 479, 775, 1079, 1204, 1631 |
| Hin6I | GCGC | 7 cut(s) | 261, 608, 694, 740, 883, 1280, 1747 |
| HinP1I | GCGC | 7 cut(s) | 261, 608, 694, 740, 883, 1280, 1747 |
| HincII | GTYRAC | 3 cut(s) | 385, 1150, 1381 |
| HindII | GTYRAC | 3 cut(s) | 385, 1150, 1381 |
| HpaII | CCGG | 5 cut(s) | 810, 975, 1038, 1308, 1457 |
| HphI | GGTGA | 5 cut(s) | 41, 298, 719, 768, 1450 |
| Hpy166II | GTNNAC | 7 cut(s) | 318, 385, 394, 685, 1150, 1348, 1381 |
| Hpy188I | TCNGA | 6 cut(s) | 46, 634, 723, 861, 1158, 1701 |
| Hpy188III | TCNNGA | 5 cut(s) | 191, 538, 754, 899, 1507 |
| Hpy8I | GTNNAC | 7 cut(s) | 318, 385, 394, 685, 1150, 1348, 1381 |
| Hpy99I | CGWCG | 6 cut(s) | 96, 460, 905, 1325, 1365, 1385 |
| HpyAV | CCTTC | 7 cut(s) | 205, 757, 1064, 1408, 1429, 1578, 1612 |
| HpyCH4III | ACNGT | 6 cut(s) | 373, 652, 987, 1444, 1727, 1798 |
| HpyCH4IV | ACGT | 3 cut(s) | 687, 1062, 1205 |
| HpyCH4V | TGCA | 8 cut(s) | 107, 140, 487, 667, 705, 1246, 1288, 1808 |
| HpyF3I | CTNAG | 6 cut(s) | 192, 329, 722, 1179, 1518, 1676 |
| HpySE526I | ACGT | 3 cut(s) | 687, 1062, 1205 |
| Hsp92I | GRCGYC | 2 cut(s) | 740, 1747 |
| Hsp92II | CATG | 6 cut(s) | 175, 479, 775, 1079, 1204, 1631 |
| HspAI | GCGC | 7 cut(s) | 261, 608, 694, 740, 883, 1280, 1747 |
| KasI | GGCGCC | 2 cut(s) | 739, 1746 |
| KpnI | GGTACC | 1 cut(s) | 342 |
| KspI | CCGCGG | 2 cut(s) | 345, 1786 |
| Kzo9I | GATC | 4 cut(s) | 495, 750, 924, 1686 |
| LmnI | GCTCC | 5 cut(s) | 278, 1253, 1513, 1705, 1741 |
| LweI | GCATC | 7 cut(s) | 149, 205, 570, 692, 1726, 1759, 1768 |
| MaeI | CTAG | 5 cut(s) | 6, 131, 201, 267, 1122 |
| MaeII | ACGT | 3 cut(s) | 687, 1062, 1205 |
| MaeIII | GTNAC | 8 cut(s) | 51, 511, 597, 725, 774, 1333, 1438, 1444 |
| MalI | GATC | 4 cut(s) | 497, 752, 926, 1688 |
| MbiI | CCGCTC | 2 cut(s) | 1669, 1744 |
| MboI | GATC | 4 cut(s) | 495, 750, 924, 1686 |
| MboII | GAAGA | 5 cut(s) | 917, 1150, 1423, 1525, 1688 |
| MflI | RGATCY | 1 cut(s) | 924 |
| MhlI | GDGCHC | 3 cut(s) | 1577, 1611, 1624 |
| MluCI | AATT | 5 cut(s) | 554, 846, 949, 1096, 1502 |
| Mly113I | GGCGCC | 2 cut(s) | 740, 1747 |
| MlyI | GAGTC | 7 cut(s) | 59, 77, 323, 733, 761, 889, 1475 |
| MmeI | TCCRAC | 1 cut(s) | 875 |
| MslI | CAYNNNNRTG | 1 cut(s) | 622 |
| MspA1I | CMGCKG | 5 cut(s) | 278, 344, 439, 470, 1785 |
| MspI | CCGG | 5 cut(s) | 810, 975, 1038, 1308, 1457 |
| MvaI | CCWGG | 9 cut(s) | 40, 160, 322, 414, 734, 781, 917, 1103, 1661 |
| MvnI | CGCG | 3 cut(s) | 344, 900, 1785 |
| NarI | GGCGCC | 2 cut(s) | 740, 1747 |
| NciI | CCSGG | 1 cut(s) | 1039 |
| NcoI | CCATGG | 2 cut(s) | 171, 1075 |
| NdeI | CATATG | 1 cut(s) | 1495 |
| NdeII | GATC | 4 cut(s) | 495, 750, 924, 1686 |
| NheI | GCTAGC | 2 cut(s) | 5, 266 |
| NlaIII | CATG | 6 cut(s) | 175, 479, 775, 1079, 1204, 1631 |
| NmeAIII | GCCGAG | 3 cut(s) | 1200, 1543, 1577 |
| NmuCI | GTSAC | 7 cut(s) | 51, 511, 725, 774, 1333, 1438, 1444 |
| NruI | TCGCGA | 1 cut(s) | 900 |
| NspI | RCATGY | 1 cut(s) | 479 |
| NspV | TTCGAA | 1 cut(s) | 123 |
| OliI | CACNNNNGTG | 1 cut(s) | 622 |
| PaeI | GCATGC | 1 cut(s) | 479 |
| PasI | CCCWGGG | 1 cut(s) | 159 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 184, 1377 |
| PfeI | GAWTC | 4 cut(s) | 35, 718, 1029, 1615 |
| PflFI | GACNNNGTC | 1 cut(s) | 1376 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 159, 813 |
| PfoI | TCCNGGA | 1 cut(s) | 1101 |
| PleI | GAGTC | 7 cut(s) | 58, 77, 322, 732, 761, 889, 1475 |
| PluTI | GGCGCC | 2 cut(s) | 743, 1750 |
| PpsI | GAGTC | 7 cut(s) | 58, 77, 322, 732, 761, 889, 1475 |
| Ppu21I | YACGTR | 1 cut(s) | 688 |
| PpuMI | RGGWCCY | 1 cut(s) | 789 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1145 |
| Psp5II | RGGWCCY | 1 cut(s) | 789 |
| Psp6I | CCWGG | 9 cut(s) | 38, 158, 320, 412, 732, 779, 915, 1101, 1659 |
| PspFI | CCCAGC | 3 cut(s) | 813, 978, 1451 |
| PspGI | CCWGG | 9 cut(s) | 38, 158, 320, 412, 732, 779, 915, 1101, 1659 |
| PspOMI | GGGCCC | 1 cut(s) | 1573 |
| PspPPI | RGGWCCY | 1 cut(s) | 789 |
| PstI | CTGCAG | 1 cut(s) | 109 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1660 |
| PsuI | RGATCY | 1 cut(s) | 924 |
| PsyI | GACNNNGTC | 1 cut(s) | 1376 |
| RruI | TCGCGA | 1 cut(s) | 900 |
| RsaI | GTAC | 3 cut(s) | 340, 686, 1025 |
| RsaNI | GTAC | 3 cut(s) | 339, 685, 1024 |
| RseI | CAYNNNNRTG | 1 cut(s) | 622 |
| SacII | CCGCGG | 2 cut(s) | 345, 1786 |
| SalI | GTCGAC | 2 cut(s) | 1148, 1379 |
| Sau3AI | GATC | 4 cut(s) | 495, 750, 924, 1686 |
| SchI | GAGTC | 7 cut(s) | 59, 77, 323, 733, 761, 889, 1475 |
| SduI | GDGCHC | 3 cut(s) | 1577, 1611, 1624 |
| SfaNI | GCATC | 7 cut(s) | 149, 205, 570, 692, 1726, 1759, 1768 |
| SfcI | CTRYAG | 4 cut(s) | 105, 886, 1557, 1591 |
| SfoI | GGCGCC | 2 cut(s) | 741, 1748 |
| Sfr303I | CCGCGG | 2 cut(s) | 345, 1786 |
| SfuI | TTCGAA | 1 cut(s) | 123 |
| SgrBI | CCGCGG | 2 cut(s) | 345, 1786 |
| SinI | GGWCC | 3 cut(s) | 789, 1079, 1399 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 622 |
| SphI | GCATGC | 1 cut(s) | 479 |
| Sse9I | AATT | 5 cut(s) | 554, 846, 949, 1096, 1502 |
| SspDI | GGCGCC | 2 cut(s) | 739, 1746 |
| SspMI | CTAG | 5 cut(s) | 6, 131, 201, 267, 1122 |
| StyI | CCWWGG | 6 cut(s) | 171, 697, 1075, 1351, 1719, 1755 |
| TaaI | ACNGT | 6 cut(s) | 373, 652, 987, 1444, 1727, 1798 |
| TaiI | ACGT | 3 cut(s) | 690, 1065, 1208 |
| TaqI | TCGA | 8 cut(s) | 123, 753, 833, 993, 1149, 1380, 1433, 1536 |
| TaqII | GACCGA | 2 cut(s) | 84, 859 |
| TasI | AATT | 5 cut(s) | 554, 846, 949, 1096, 1502 |
| TatI | WGTACW | 1 cut(s) | 1023 |
| TfiI | GAWTC | 4 cut(s) | 35, 718, 1029, 1615 |
| TscAI | CASTG | 1 cut(s) | 1290 |
| TseFI | GTSAC | 7 cut(s) | 51, 511, 725, 774, 1333, 1438, 1444 |
| Tsp45I | GTSAC | 7 cut(s) | 51, 511, 725, 774, 1333, 1438, 1444 |
| TspDTI | ATGAA | 3 cut(s) | 437, 491, 837 |
| TspGWI | ACGGA | 4 cut(s) | 723, 917, 1526, 1748 |
| TspRI | CASTG | 1 cut(s) | 1290 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1376 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 159, 813 |
| VpaK11BI | GGWCC | 3 cut(s) | 789, 1079, 1399 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 859, 1754 |
| XapI | RAATTY | 3 cut(s) | 554, 846, 1502 |
| XceI | RCATGY | 1 cut(s) | 479 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1657 |
| XmiI | GTMKAC | 4 cut(s) | 317, 1149, 1347, 1380 |
| XspI | CTAG | 5 cut(s) | 6, 131, 201, 267, 1122 |