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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 629, 665 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 675 |
| AccBSI | CCGCTC | 3 cut(s) | 507, 740, 789 |
| AccI | GTMKAC | 3 cut(s) | 66, 323, 530 |
| AccII | CGCG | 6 cut(s) | 57, 236, 285, 361, 435, 864 |
| AcoI | YGGCCR | 2 cut(s) | 722, 769 |
| AcuI | CTGAAG | 5 cut(s) | 81, 464, 538, 873, 1005 |
| AcyI | GRCGYC | 2 cut(s) | 666, 839 |
| AfaI | GTAC | 4 cut(s) | 358, 502, 596, 736 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 154, 309, 326, 395, 675, 888, 889 |
| AgsI | TTSAA | 3 cut(s) | 40, 572, 779 |
| AjiI | CACGTC | 1 cut(s) | 484 |
| AjnI | CCWGG | 1 cut(s) | 766 |
| AluBI | AGCT | 4 cut(s) | 442, 638, 706, 719 |
| AluI | AGCT | 4 cut(s) | 442, 638, 706, 719 |
| Alw26I | GTCTC | 1 cut(s) | 864 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 566 |
| Ama87I | CYCGRG | 3 cut(s) | 467, 888, 927 |
| AoxI | GGCC | 7 cut(s) | 21, 81, 429, 722, 769, 879, 966 |
| ApaI | GGGCCC | 1 cut(s) | 433 |
| ApeKI | GCWGC | 9 cut(s) | 169, 208, 347, 439, 617, 652, 655, 703, 749 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 367, 399 |
| AspLEI | GCGC | 8 cut(s) | 59, 109, 142, 236, 271, 285, 668, 866 |
| AspS9I | GGNCC | 6 cut(s) | 52, 228, 363, 429, 430, 880 |
| AsuC2I | CCSGG | 5 cut(s) | 12, 97, 427, 889, 890 |
| AsuHPI | GGTGA | 2 cut(s) | 212, 415 |
| AvaI | CYCGRG | 3 cut(s) | 467, 888, 927 |
| AvaII | GGWCC | 3 cut(s) | 52, 228, 363 |
| BaeGI | GKGCMC | 2 cut(s) | 433, 634 |
| BalI | TGGCCA | 1 cut(s) | 771 |
| BanI | GGYRCC | 2 cut(s) | 629, 665 |
| BanII | GRGCYC | 4 cut(s) | 129, 149, 433, 787 |
| BbvI | GCAGC | 9 cut(s) | 156, 195, 334, 451, 629, 639, 667, 715, 736 |
| BccI | CCATC | 2 cut(s) | 677, 890 |
| BceAI | ACGGC | 3 cut(s) | 296, 304, 366 |
| BciT130I | CCWGG | 1 cut(s) | 768 |
| BcnI | CCSGG | 5 cut(s) | 12, 97, 427, 889, 890 |
| BcoDI | GTCTC | 1 cut(s) | 864 |
| BfaI | CTAG | 1 cut(s) | 635 |
| BfmI | CTRYAG | 3 cut(s) | 77, 489, 653 |
| BfoI | RGCGCY | 3 cut(s) | 143, 272, 669 |
| BlpI | GCTNAGC | 1 cut(s) | 143 |
| Bme1390I | CCNGG | 6 cut(s) | 12, 97, 427, 768, 889, 890 |
| Bme18I | GGWCC | 3 cut(s) | 52, 228, 363 |
| BmeT110I | CYCGRG | 3 cut(s) | 467, 888, 927 |
| BmgBI | CACGTC | 1 cut(s) | 484 |
| BmgT120I | GGNCC | 6 cut(s) | 52, 228, 363, 429, 430, 880 |
| BmrFI | CCNGG | 6 cut(s) | 12, 97, 427, 768, 889, 890 |
| BmrI | ACTGGG | 3 cut(s) | 685, 841, 909 |
| BmsI | GCATC | 3 cut(s) | 639, 681, 970 |
| BmuI | ACTGGG | 3 cut(s) | 685, 841, 909 |
| BoxI | GACNNNNGTC | 1 cut(s) | 536 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 812, 844 |
| BpmI | CTGGAG | 1 cut(s) | 372 |
| Bpu10I | CCTNAGC | 1 cut(s) | 790 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 143 |
| BpuMI | CCSGG | 5 cut(s) | 12, 97, 427, 889, 890 |
| BsaHI | GRCGYC | 2 cut(s) | 666, 839 |
| BsaJI | CCNNGG | 6 cut(s) | 162, 426, 468, 766, 888, 928 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 154, 309, 326, 395, 675, 888, 889 |
| Bse118I | RCCGGY | 3 cut(s) | 230, 271, 694 |
| Bse1I | ACTGG | 5 cut(s) | 24, 680, 847, 915, 972 |
| Bse3DI | GCAATG | 1 cut(s) | 54 |
| BseBI | CCWGG | 1 cut(s) | 768 |
| BseDI | CCNNGG | 6 cut(s) | 162, 426, 468, 766, 888, 928 |
| BseGI | GGATG | 2 cut(s) | 901, 955 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 154, 309, 326, 395, 675, 888, 889 |
| BseMI | GCAATG | 1 cut(s) | 54 |
| BseMII | CTCAG | 2 cut(s) | 134, 804 |
| BseNI | ACTGG | 5 cut(s) | 24, 680, 847, 915, 972 |
| BseSI | GKGCMC | 2 cut(s) | 433, 634 |
| BseXI | GCAGC | 9 cut(s) | 156, 195, 334, 451, 629, 639, 667, 715, 736 |
| BseYI | CCCAGC | 1 cut(s) | 866 |
| BsgI | GTGCAG | 1 cut(s) | 722 |
| Bsh1236I | CGCG | 6 cut(s) | 57, 236, 285, 361, 435, 864 |
| Bsh1285I | CGRYCG | 1 cut(s) | 530 |
| BshFI | GGCC | 7 cut(s) | 23, 83, 431, 724, 771, 881, 968 |
| BshNI | GGYRCC | 2 cut(s) | 629, 665 |
| BsiEI | CGRYCG | 1 cut(s) | 530 |
| BsiHKCI | CYCGRG | 3 cut(s) | 467, 888, 927 |
| BsiSI | CCGG | 7 cut(s) | 11, 96, 231, 272, 426, 695, 889 |
| BslFI | GGGAC | 2 cut(s) | 241, 903 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 154, 309, 326, 395, 675, 888, 889 |
| BsmAI | GTCTC | 1 cut(s) | 864 |
| BsmFI | GGGAC | 2 cut(s) | 241, 903 |
| BsnI | GGCC | 7 cut(s) | 23, 83, 431, 724, 771, 881, 968 |
| BsoBI | CYCGRG | 3 cut(s) | 467, 888, 927 |
| Bsp120I | GGGCCC | 1 cut(s) | 429 |
| Bsp1286I | GDGCHC | 5 cut(s) | 129, 149, 433, 634, 787 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 143 |
| BspANI | GGCC | 7 cut(s) | 23, 83, 431, 724, 771, 881, 968 |
| BspCNI | CTCAG | 2 cut(s) | 135, 803 |
| BspFNI | CGCG | 6 cut(s) | 57, 236, 285, 361, 435, 864 |
| BspMAI | CTGCAG | 2 cut(s) | 81, 657 |
| BspT107I | GGYRCC | 2 cut(s) | 629, 665 |
| BsrBI | CCGCTC | 3 cut(s) | 507, 740, 789 |
| BsrDI | GCAATG | 1 cut(s) | 54 |
| BsrFI | RCCGGY | 3 cut(s) | 230, 271, 694 |
| BsrI | ACTGG | 5 cut(s) | 24, 680, 847, 915, 972 |
| BssAI | RCCGGY | 3 cut(s) | 230, 271, 694 |
| BssECI | CCNNGG | 6 cut(s) | 162, 426, 468, 766, 888, 928 |
| BssNI | GRCGYC | 2 cut(s) | 666, 839 |
| Bst2UI | CCWGG | 1 cut(s) | 768 |
| Bst4CI | ACNGT | 1 cut(s) | 904 |
| Bst6I | CTCTTC | 2 cut(s) | 399, 405 |
| BstACI | GRCGYC | 2 cut(s) | 666, 839 |
| BstDEI | CTNAG | 2 cut(s) | 143, 790 |
| BstDSI | CCRYGG | 1 cut(s) | 162 |
| BstEII | GGTNACC | 1 cut(s) | 421 |
| BstF5I | GGATG | 2 cut(s) | 901, 955 |
| BstFNI | CGCG | 6 cut(s) | 57, 236, 285, 361, 435, 864 |
| BstH2I | RGCGCY | 3 cut(s) | 143, 272, 669 |
| BstHHI | GCGC | 8 cut(s) | 59, 109, 142, 236, 271, 285, 668, 866 |
| BstMAI | GTCTC | 1 cut(s) | 864 |
| BstMCI | CGRYCG | 1 cut(s) | 530 |
| BstNI | CCWGG | 1 cut(s) | 768 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 536 |
| BstPI | GGTNACC | 1 cut(s) | 421 |
| BstSCI | CCNGG | 6 cut(s) | 10, 95, 425, 766, 887, 888 |
| BstSFI | CTRYAG | 3 cut(s) | 77, 489, 653 |
| BstSLI | GKGCMC | 2 cut(s) | 433, 634 |
| BstUI | CGCG | 6 cut(s) | 57, 236, 285, 361, 435, 864 |
| BstV1I | GCAGC | 9 cut(s) | 156, 195, 334, 451, 629, 639, 667, 715, 736 |
| BsuRI | GGCC | 7 cut(s) | 23, 83, 431, 724, 771, 881, 968 |
| BtgI | CCRYGG | 1 cut(s) | 162 |
| BtrI | CACGTC | 1 cut(s) | 484 |
| BtsCI | GGATG | 2 cut(s) | 901, 955 |
| BtsI | GCAGTG | 1 cut(s) | 744 |
| BtsIMutI | CAGTG | 3 cut(s) | 605, 744, 979 |
| CaiI | CAGNNNCTG | 1 cut(s) | 566 |
| CfoI | GCGC | 8 cut(s) | 59, 109, 142, 236, 271, 285, 668, 866 |
| Cfr10I | RCCGGY | 3 cut(s) | 230, 271, 694 |
| Cfr13I | GGNCC | 6 cut(s) | 52, 228, 363, 429, 430, 880 |
| Cfr9I | CCCGGG | 1 cut(s) | 888 |
| CseI | GACGC | 3 cut(s) | 41, 675, 847 |
| Csp6I | GTAC | 4 cut(s) | 357, 501, 595, 735 |
| CviAII | CATG | 2 cut(s) | 85, 773 |
| CviQI | GTAC | 4 cut(s) | 357, 501, 595, 735 |
| DdeI | CTNAG | 2 cut(s) | 143, 790 |
| DinI | GGCGCC | 1 cut(s) | 667 |
| EaeI | YGGCCR | 2 cut(s) | 722, 769 |
| Eam1104I | CTCTTC | 2 cut(s) | 399, 405 |
| EarI | CTCTTC | 2 cut(s) | 399, 405 |
| EciI | GGCGGA | 5 cut(s) | 271, 453, 605, 825, 908 |
| Eco24I | GRGCYC | 4 cut(s) | 129, 149, 433, 787 |
| Eco47I | GGWCC | 3 cut(s) | 52, 228, 363 |
| Eco57I | CTGAAG | 5 cut(s) | 81, 464, 538, 873, 1005 |
| Eco88I | CYCGRG | 3 cut(s) | 467, 888, 927 |
| Eco91I | GGTNACC | 1 cut(s) | 421 |
| EcoO109I | RGGNCCY | 1 cut(s) | 429 |
| EcoO65I | GGTNACC | 1 cut(s) | 421 |
| EcoRII | CCWGG | 1 cut(s) | 766 |
| EcoT38I | GRGCYC | 4 cut(s) | 129, 149, 433, 787 |
| EgeI | GGCGCC | 1 cut(s) | 667 |
| EheI | GGCGCC | 1 cut(s) | 667 |
| FaeI | CATG | 2 cut(s) | 88, 776 |
| FaiI | YATR | 7 cut(s) | 86, 90, 134, 305, 577, 774, 885 |
| FaqI | GGGAC | 2 cut(s) | 241, 903 |
| FatI | CATG | 2 cut(s) | 84, 772 |
| FauI | CCCGC | 9 cut(s) | 217, 220, 301, 392, 440, 484, 619, 794, 1021 |
| FblI | GTMKAC | 3 cut(s) | 66, 323, 530 |
| FokI | GGATG | 2 cut(s) | 908, 942 |
| FriOI | GRGCYC | 4 cut(s) | 129, 149, 433, 787 |
| FspBI | CTAG | 1 cut(s) | 635 |
| GlaI | GCGC | 8 cut(s) | 58, 108, 141, 235, 270, 284, 667, 865 |
| GsaI | CCCAGC | 1 cut(s) | 870 |
| GsuI | CTGGAG | 1 cut(s) | 372 |
| HaeII | RGCGCY | 3 cut(s) | 143, 272, 669 |
| HaeIII | GGCC | 7 cut(s) | 23, 83, 431, 724, 771, 881, 968 |
| HapII | CCGG | 7 cut(s) | 11, 96, 231, 272, 426, 695, 889 |
| HgaI | GACGC | 3 cut(s) | 41, 675, 847 |
| HhaI | GCGC | 8 cut(s) | 59, 109, 142, 236, 271, 285, 668, 866 |
| Hin1I | GRCGYC | 2 cut(s) | 666, 839 |
| Hin1II | CATG | 2 cut(s) | 88, 776 |
| Hin6I | GCGC | 8 cut(s) | 57, 107, 140, 234, 269, 283, 666, 864 |
| HinP1I | GCGC | 8 cut(s) | 57, 107, 140, 234, 269, 283, 666, 864 |
| HincII | GTYRAC | 3 cut(s) | 324, 386, 531 |
| HindII | GTYRAC | 3 cut(s) | 324, 386, 531 |
| HinfI | GANTC | 6 cut(s) | 4, 392, 545, 572, 813, 827 |
| HpaII | CCGG | 7 cut(s) | 11, 96, 231, 272, 426, 695, 889 |
| HphI | GGTGA | 2 cut(s) | 212, 415 |
| Hpy166II | GTNNAC | 4 cut(s) | 67, 324, 386, 531 |
| Hpy188I | TCNGA | 3 cut(s) | 154, 853, 937 |
| Hpy188III | TCNNGA | 3 cut(s) | 29, 40, 556 |
| Hpy8I | GTNNAC | 4 cut(s) | 67, 324, 386, 531 |
| Hpy99I | CGWCG | 3 cut(s) | 325, 328, 691 |
| HpyAV | CCTTC | 8 cut(s) | 197, 253, 562, 595, 616, 655, 773, 980 |
| HpyCH4III | ACNGT | 1 cut(s) | 904 |
| HpyCH4IV | ACGT | 1 cut(s) | 483 |
| HpyCH4V | TGCA | 4 cut(s) | 79, 370, 655, 703 |
| HpyF3I | CTNAG | 2 cut(s) | 143, 790 |
| HpySE526I | ACGT | 1 cut(s) | 483 |
| Hsp92I | GRCGYC | 2 cut(s) | 666, 839 |
| Hsp92II | CATG | 2 cut(s) | 88, 776 |
| HspAI | GCGC | 8 cut(s) | 57, 107, 140, 234, 269, 283, 666, 864 |
| KasI | GGCGCC | 1 cut(s) | 665 |
| KroI | GCCGGC | 1 cut(s) | 271 |
| KroNI | GCCGGC | 1 cut(s) | 273 |
| LmnI | GCTCC | 8 cut(s) | 124, 163, 316, 466, 478, 745, 782, 995 |
| Lsp1109I | GCAGC | 9 cut(s) | 156, 195, 334, 451, 629, 639, 667, 715, 736 |
| LweI | GCATC | 3 cut(s) | 639, 681, 970 |
| MaeI | CTAG | 1 cut(s) | 635 |
| MaeII | ACGT | 1 cut(s) | 483 |
| MaeIII | GTNAC | 3 cut(s) | 29, 298, 421 |
| MbiI | CCGCTC | 3 cut(s) | 507, 740, 789 |
| MboII | GAAGA | 3 cut(s) | 416, 422, 457 |
| MhlI | GDGCHC | 5 cut(s) | 129, 149, 433, 634, 787 |
| MlsI | TGGCCA | 1 cut(s) | 771 |
| MluNI | TGGCCA | 1 cut(s) | 771 |
| Mly113I | GGCGCC | 1 cut(s) | 666 |
| MlyI | GAGTC | 1 cut(s) | 821 |
| MmeI | TCCRAC | 1 cut(s) | 294 |
| Mox20I | TGGCCA | 1 cut(s) | 771 |
| MreI | CGCCGGCG | 1 cut(s) | 271 |
| MroNI | GCCGGC | 1 cut(s) | 271 |
| MscI | TGGCCA | 1 cut(s) | 771 |
| MslI | CAYNNNNRTG | 1 cut(s) | 195 |
| Msp20I | TGGCCA | 1 cut(s) | 771 |
| MspA1I | CMGCKG | 5 cut(s) | 215, 347, 442, 479, 494 |
| MspI | CCGG | 7 cut(s) | 11, 96, 231, 272, 426, 695, 889 |
| MspR9I | CCNGG | 6 cut(s) | 12, 97, 427, 768, 889, 890 |
| MvaI | CCWGG | 1 cut(s) | 768 |
| MvnI | CGCG | 6 cut(s) | 57, 236, 285, 361, 435, 864 |
| NaeI | GCCGGC | 1 cut(s) | 273 |
| NarI | GGCGCC | 1 cut(s) | 666 |
| NciI | CCSGG | 5 cut(s) | 12, 97, 427, 889, 890 |
| NgoMIV | GCCGGC | 1 cut(s) | 271 |
| NlaIII | CATG | 2 cut(s) | 88, 776 |
| NmeAIII | GCCGAG | 1 cut(s) | 700 |
| NmuCI | GTSAC | 2 cut(s) | 29, 421 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 332, 379, 617 |
| PdiI | GCCGGC | 1 cut(s) | 273 |
| PfeI | GAWTC | 4 cut(s) | 392, 545, 572, 813 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 675 |
| PleI | GAGTC | 1 cut(s) | 821 |
| PluTI | GGCGCC | 1 cut(s) | 669 |
| PpsI | GAGTC | 1 cut(s) | 821 |
| PshAI | GACNNNNGTC | 1 cut(s) | 536 |
| Psp6I | CCWGG | 1 cut(s) | 766 |
| PspEI | GGTNACC | 1 cut(s) | 421 |
| PspFI | CCCAGC | 1 cut(s) | 866 |
| PspGI | CCWGG | 1 cut(s) | 766 |
| PspOMI | GGGCCC | 1 cut(s) | 429 |
| PspPI | GGNCC | 6 cut(s) | 52, 228, 363, 429, 430, 880 |
| PstI | CTGCAG | 2 cut(s) | 81, 657 |
| PstNI | CAGNNNCTG | 1 cut(s) | 566 |
| PvuII | CAGCTG | 1 cut(s) | 442 |
| RsaI | GTAC | 4 cut(s) | 358, 502, 596, 736 |
| RsaNI | GTAC | 4 cut(s) | 357, 501, 595, 735 |
| RseI | CAYNNNNRTG | 1 cut(s) | 195 |
| SalI | GTCGAC | 2 cut(s) | 322, 529 |
| Sau96I | GGNCC | 6 cut(s) | 52, 228, 363, 429, 430, 880 |
| SbfI | CCTGCAGG | 1 cut(s) | 81 |
| SchI | GAGTC | 1 cut(s) | 821 |
| ScrFI | CCNGG | 6 cut(s) | 12, 97, 427, 768, 889, 890 |
| SdaI | CCTGCAGG | 1 cut(s) | 81 |
| SduI | GDGCHC | 5 cut(s) | 129, 149, 433, 634, 787 |
| SfaNI | GCATC | 3 cut(s) | 639, 681, 970 |
| SfcI | CTRYAG | 3 cut(s) | 77, 489, 653 |
| SfoI | GGCGCC | 1 cut(s) | 667 |
| SgrAI | CRCCGGYG | 1 cut(s) | 271 |
| SgrDI | CGTCGACG | 1 cut(s) | 322 |
| SinI | GGWCC | 3 cut(s) | 52, 228, 363 |
| SmaI | CCCGGG | 1 cut(s) | 890 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 195 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 81 |
| SspDI | GGCGCC | 1 cut(s) | 665 |
| SspMI | CTAG | 1 cut(s) | 635 |
| StyD4I | CCNGG | 6 cut(s) | 10, 95, 425, 766, 887, 888 |
| TaaI | ACNGT | 1 cut(s) | 904 |
| TaiI | ACGT | 1 cut(s) | 486 |
| TaqI | TCGA | 4 cut(s) | 323, 530, 672, 689 |
| TaqII | GACCGA | 1 cut(s) | 516 |
| TatI | WGTACW | 1 cut(s) | 594 |
| TauI | GCSGC | 7 cut(s) | 107, 181, 239, 256, 510, 881, 971 |
| TfiI | GAWTC | 4 cut(s) | 392, 545, 572, 813 |
| TscAI | CASTG | 3 cut(s) | 612, 751, 979 |
| TseFI | GTSAC | 2 cut(s) | 29, 421 |
| TseI | GCWGC | 9 cut(s) | 169, 208, 347, 439, 617, 652, 655, 703, 749 |
| Tsp45I | GTSAC | 2 cut(s) | 29, 421 |
| TspGWI | ACGGA | 3 cut(s) | 526, 626, 850 |
| TspMI | CCCGGG | 1 cut(s) | 888 |
| TspRI | CASTG | 3 cut(s) | 612, 751, 979 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 675 |
| VpaK11BI | GGWCC | 3 cut(s) | 52, 228, 363 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 191, 310 |
| XmaI | CCCGGG | 1 cut(s) | 888 |
| XmiI | GTMKAC | 3 cut(s) | 66, 323, 530 |
| XspI | CTAG | 1 cut(s) | 635 |