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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 875 |
| AatII | GACGTC | 1 cut(s) | 418 |
| Acc36I | ACCTGC | 1 cut(s) | 819 |
| AccB1I | GGYRCC | 4 cut(s) | 77, 702, 738, 954 |
| AccBSI | CCGCTC | 5 cut(s) | 140, 167, 380, 458, 509 |
| AccII | CGCG | 3 cut(s) | 200, 421, 1014 |
| AcoI | YGGCCR | 4 cut(s) | 436, 631, 781, 857 |
| AcuI | CTGAAG | 4 cut(s) | 212, 634, 826, 1048 |
| AcyI | GRCGYC | 5 cut(s) | 78, 282, 415, 703, 739 |
| AfaI | GTAC | 2 cut(s) | 623, 833 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 302, 562, 828, 873, 908 |
| AflII | CTTAAG | 1 cut(s) | 669 |
| AflIII | ACRYGT | 1 cut(s) | 467 |
| AgsI | TTSAA | 3 cut(s) | 645, 653, 728 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 970 |
| AjnI | CCWGG | 3 cut(s) | 451, 815, 942 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 129, 161 |
| AluBI | AGCT | 6 cut(s) | 45, 232, 311, 428, 612, 668 |
| AluI | AGCT | 6 cut(s) | 45, 232, 311, 428, 612, 668 |
| Alw21I | GWGCWC | 1 cut(s) | 313 |
| Alw26I | GTCTC | 5 cut(s) | 336, 356, 476, 795, 957 |
| Ama87I | CYCGRG | 3 cut(s) | 706, 839, 982 |
| AoxI | GGCC | 9 cut(s) | 16, 34, 436, 631, 709, 781, 857, 946, 1039 |
| ApaI | GGGCCC | 1 cut(s) | 20 |
| ApeKI | GCWGC | 6 cut(s) | 290, 500, 545, 627, 844, 1032 |
| AspLEI | GCGC | 6 cut(s) | 80, 119, 202, 705, 741, 1016 |
| AspS9I | GGNCC | 8 cut(s) | 16, 17, 35, 709, 819, 877, 946, 988 |
| AsuC2I | CCSGG | 3 cut(s) | 296, 707, 708 |
| AsuHPI | GGTGA | 1 cut(s) | 603 |
| AvaI | CYCGRG | 3 cut(s) | 706, 839, 982 |
| AvaII | GGWCC | 3 cut(s) | 819, 877, 988 |
| BaeGI | GKGCMC | 1 cut(s) | 20 |
| BalI | TGGCCA | 2 cut(s) | 438, 859 |
| BanI | GGYRCC | 4 cut(s) | 77, 702, 738, 954 |
| BanII | GRGCYC | 2 cut(s) | 20, 313 |
| Bbv12I | GWGCWC | 1 cut(s) | 313 |
| BbvI | GCAGC | 6 cut(s) | 302, 487, 557, 614, 856, 1044 |
| BccI | CCATC | 4 cut(s) | 163, 447, 560, 868 |
| BceAI | ACGGC | 2 cut(s) | 223, 968 |
| BciT130I | CCWGG | 3 cut(s) | 453, 817, 944 |
| BcnI | CCSGG | 3 cut(s) | 296, 707, 708 |
| BcoDI | GTCTC | 5 cut(s) | 336, 356, 476, 795, 957 |
| BfmI | CTRYAG | 1 cut(s) | 501 |
| BfoI | RGCGCY | 3 cut(s) | 81, 706, 742 |
| BfrI | CTTAAG | 1 cut(s) | 669 |
| BfuAI | ACCTGC | 1 cut(s) | 819 |
| Bme1390I | CCNGG | 6 cut(s) | 296, 453, 707, 708, 817, 944 |
| Bme18I | GGWCC | 3 cut(s) | 819, 877, 988 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 970 |
| BmeT110I | CYCGRG | 3 cut(s) | 706, 839, 982 |
| BmgT120I | GGNCC | 8 cut(s) | 16, 17, 35, 709, 819, 877, 946, 988 |
| BmiI | GGNNCC | 9 cut(s) | 17, 18, 79, 704, 740, 878, 879, 956, 989 |
| BmrFI | CCNGG | 6 cut(s) | 296, 453, 707, 708, 817, 944 |
| BmrI | ACTGGG | 1 cut(s) | 964 |
| BmuI | ACTGGG | 1 cut(s) | 964 |
| BoxI | GACNNNNGTC | 1 cut(s) | 807 |
| BpmI | CTGGAG | 3 cut(s) | 318, 474, 951 |
| Bpu10I | CCTNAGC | 2 cut(s) | 312, 520 |
| BpuMI | CCSGG | 3 cut(s) | 296, 707, 708 |
| BsaHI | GRCGYC | 5 cut(s) | 78, 282, 415, 703, 739 |
| BsaI | GGTCTC | 2 cut(s) | 336, 957 |
| BsaJI | CCNNGG | 6 cut(s) | 294, 419, 685, 706, 943, 983 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 129, 159, 900, 930 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 302, 562, 828, 873, 908 |
| Bse118I | RCCGGY | 1 cut(s) | 779 |
| Bse1I | ACTGG | 3 cut(s) | 370, 391, 970 |
| BseBI | CCWGG | 3 cut(s) | 453, 817, 944 |
| BseDI | CCNNGG | 6 cut(s) | 294, 419, 685, 706, 943, 983 |
| BseGI | GGATG | 2 cut(s) | 571, 863 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 302, 562, 828, 873, 908 |
| BseMII | CTCAG | 2 cut(s) | 326, 597 |
| BseNI | ACTGG | 3 cut(s) | 370, 391, 970 |
| BseSI | GKGCMC | 1 cut(s) | 20 |
| BseX3I | CGGCCG | 2 cut(s) | 631, 781 |
| BseXI | GCAGC | 6 cut(s) | 302, 487, 557, 614, 856, 1044 |
| BseYI | CCCAGC | 4 cut(s) | 170, 584, 880, 892 |
| BsgI | GTGCAG | 1 cut(s) | 564 |
| Bsh1236I | CGCG | 3 cut(s) | 200, 421, 1014 |
| Bsh1285I | CGRYCG | 4 cut(s) | 634, 784, 1008, 1012 |
| BshFI | GGCC | 9 cut(s) | 18, 36, 438, 633, 711, 783, 859, 948, 1041 |
| BshNI | GGYRCC | 4 cut(s) | 77, 702, 738, 954 |
| BsiEI | CGRYCG | 4 cut(s) | 634, 784, 1008, 1012 |
| BsiHKAI | GWGCWC | 1 cut(s) | 313 |
| BsiHKCI | CYCGRG | 3 cut(s) | 706, 839, 982 |
| BsiSI | CCGG | 5 cut(s) | 296, 707, 780, 798, 922 |
| BslFI | GGGAC | 3 cut(s) | 397, 777, 863 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 302, 562, 828, 873, 908 |
| BsmAI | GTCTC | 5 cut(s) | 336, 356, 476, 795, 957 |
| BsmFI | GGGAC | 3 cut(s) | 397, 777, 863 |
| BsmI | GAATGC | 2 cut(s) | 648, 680 |
| BsnI | GGCC | 9 cut(s) | 18, 36, 438, 633, 711, 783, 859, 948, 1041 |
| Bso31I | GGTCTC | 2 cut(s) | 336, 957 |
| BsoBI | CYCGRG | 3 cut(s) | 706, 839, 982 |
| Bsp120I | GGGCCC | 1 cut(s) | 16 |
| Bsp1286I | GDGCHC | 2 cut(s) | 20, 313 |
| Bsp143I | GATC | 4 cut(s) | 92, 490, 992, 1005 |
| BspANI | GGCC | 9 cut(s) | 18, 36, 438, 633, 711, 783, 859, 948, 1041 |
| BspCNI | CTCAG | 2 cut(s) | 325, 598 |
| BspFNI | CGCG | 3 cut(s) | 200, 421, 1014 |
| BspHI | TCATGA | 1 cut(s) | 124 |
| BspLI | GGNNCC | 9 cut(s) | 17, 18, 79, 704, 740, 878, 879, 956, 989 |
| BspMAI | CTGCAG | 1 cut(s) | 505 |
| BspMI | ACCTGC | 1 cut(s) | 819 |
| BspQI | GCTCTTC | 1 cut(s) | 301 |
| BspT107I | GGYRCC | 4 cut(s) | 77, 702, 738, 954 |
| BspTI | CTTAAG | 1 cut(s) | 669 |
| BspTNI | GGTCTC | 2 cut(s) | 336, 957 |
| BsrBI | CCGCTC | 5 cut(s) | 140, 167, 380, 458, 509 |
| BsrFI | RCCGGY | 1 cut(s) | 779 |
| BsrI | ACTGG | 3 cut(s) | 370, 391, 970 |
| BssAI | RCCGGY | 1 cut(s) | 779 |
| BssECI | CCNNGG | 6 cut(s) | 294, 419, 685, 706, 943, 983 |
| BssMI | GATC | 4 cut(s) | 92, 490, 992, 1005 |
| BssNI | GRCGYC | 5 cut(s) | 78, 282, 415, 703, 739 |
| Bst2UI | CCWGG | 3 cut(s) | 453, 817, 944 |
| Bst4CI | ACNGT | 1 cut(s) | 59 |
| Bst6I | CTCTTC | 1 cut(s) | 301 |
| BstACI | GRCGYC | 5 cut(s) | 78, 282, 415, 703, 739 |
| BstAFI | CTTAAG | 1 cut(s) | 669 |
| BstC8I | GCNNGC | 9 cut(s) | 20, 38, 82, 165, 191, 426, 701, 781, 1001 |
| BstDEI | CTNAG | 4 cut(s) | 286, 312, 520, 606 |
| BstDSI | CCRYGG | 1 cut(s) | 419 |
| BstEII | GGTNACC | 1 cut(s) | 596 |
| BstF5I | GGATG | 2 cut(s) | 571, 863 |
| BstFNI | CGCG | 3 cut(s) | 200, 421, 1014 |
| BstH2I | RGCGCY | 3 cut(s) | 81, 706, 742 |
| BstHHI | GCGC | 6 cut(s) | 80, 119, 202, 705, 741, 1016 |
| BstKTI | GATC | 4 cut(s) | 95, 493, 995, 1008 |
| BstMAI | GTCTC | 5 cut(s) | 336, 356, 476, 795, 957 |
| BstMBI | GATC | 4 cut(s) | 92, 490, 992, 1005 |
| BstMCI | CGRYCG | 4 cut(s) | 634, 784, 1008, 1012 |
| BstNI | CCWGG | 3 cut(s) | 453, 817, 944 |
| BstNSI | RCATGY | 1 cut(s) | 471 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 807 |
| BstPI | GGTNACC | 1 cut(s) | 596 |
| BstSCI | CCNGG | 6 cut(s) | 294, 451, 705, 706, 815, 942 |
| BstSFI | CTRYAG | 1 cut(s) | 501 |
| BstSLI | GKGCMC | 1 cut(s) | 20 |
| BstUI | CGCG | 3 cut(s) | 200, 421, 1014 |
| BstV1I | GCAGC | 6 cut(s) | 302, 487, 557, 614, 856, 1044 |
| BstZI | CGGCCG | 2 cut(s) | 631, 781 |
| BsuRI | GGCC | 9 cut(s) | 18, 36, 438, 633, 711, 783, 859, 948, 1041 |
| BtgI | CCRYGG | 1 cut(s) | 419 |
| BtsCI | GGATG | 2 cut(s) | 571, 863 |
| BtsIMutI | CAGTG | 1 cut(s) | 678 |
| BveI | ACCTGC | 1 cut(s) | 819 |
| Cac8I | GCNNGC | 9 cut(s) | 20, 38, 82, 165, 191, 426, 701, 781, 1001 |
| CciI | TCATGA | 1 cut(s) | 124 |
| CciNI | GCGGCCGC | 1 cut(s) | 631 |
| CfoI | GCGC | 6 cut(s) | 80, 119, 202, 705, 741, 1016 |
| Cfr10I | RCCGGY | 1 cut(s) | 779 |
| Cfr13I | GGNCC | 8 cut(s) | 16, 17, 35, 709, 819, 877, 946, 988 |
| Cfr42I | CCGCGG | 1 cut(s) | 422 |
| Cfr9I | CCCGGG | 1 cut(s) | 706 |
| CseI | GACGC | 2 cut(s) | 271, 780 |
| Csp6I | GTAC | 2 cut(s) | 622, 832 |
| CviAII | CATG | 2 cut(s) | 125, 468 |
| CviQI | GTAC | 2 cut(s) | 622, 832 |
| DdeI | CTNAG | 4 cut(s) | 286, 312, 520, 606 |
| DinI | GGCGCC | 3 cut(s) | 79, 704, 740 |
| DpnI | GATC | 4 cut(s) | 94, 492, 994, 1007 |
| DpnII | GATC | 4 cut(s) | 92, 490, 992, 1005 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 875 |
| DriI | GACNNNNNGTC | 1 cut(s) | 970 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 875 |
| EaeI | YGGCCR | 4 cut(s) | 436, 631, 781, 857 |
| EagI | CGGCCG | 2 cut(s) | 631, 781 |
| Eam1104I | CTCTTC | 1 cut(s) | 301 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 970 |
| EarI | CTCTTC | 1 cut(s) | 301 |
| EciI | GGCGGA | 3 cut(s) | 363, 411, 545 |
| Ecl136II | GAGCTC | 1 cut(s) | 311 |
| EclXI | CGGCCG | 2 cut(s) | 631, 781 |
| Eco24I | GRGCYC | 2 cut(s) | 20, 313 |
| Eco31I | GGTCTC | 2 cut(s) | 336, 957 |
| Eco47I | GGWCC | 3 cut(s) | 819, 877, 988 |
| Eco52I | CGGCCG | 2 cut(s) | 631, 781 |
| Eco53kI | GAGCTC | 1 cut(s) | 311 |
| Eco57I | CTGAAG | 4 cut(s) | 212, 634, 826, 1048 |
| Eco88I | CYCGRG | 3 cut(s) | 706, 839, 982 |
| Eco91I | GGTNACC | 1 cut(s) | 596 |
| EcoICRI | GAGCTC | 1 cut(s) | 311 |
| EcoO109I | RGGNCCY | 2 cut(s) | 16, 877 |
| EcoO65I | GGTNACC | 1 cut(s) | 596 |
| EcoRII | CCWGG | 3 cut(s) | 451, 815, 942 |
| EcoT38I | GRGCYC | 2 cut(s) | 20, 313 |
| EgeI | GGCGCC | 3 cut(s) | 79, 704, 740 |
| EheI | GGCGCC | 3 cut(s) | 79, 704, 740 |
| FaeI | CATG | 2 cut(s) | 128, 471 |
| FaqI | GGGAC | 3 cut(s) | 397, 777, 863 |
| FatI | CATG | 2 cut(s) | 124, 467 |
| FokI | GGATG | 2 cut(s) | 578, 850 |
| FriOI | GRGCYC | 2 cut(s) | 20, 313 |
| GlaI | GCGC | 6 cut(s) | 79, 118, 201, 704, 740, 1015 |
| GsaI | CCCAGC | 4 cut(s) | 174, 588, 884, 896 |
| GsuI | CTGGAG | 3 cut(s) | 318, 474, 951 |
| HaeII | RGCGCY | 3 cut(s) | 81, 706, 742 |
| HaeIII | GGCC | 9 cut(s) | 18, 36, 438, 633, 711, 783, 859, 948, 1041 |
| HapII | CCGG | 5 cut(s) | 296, 707, 780, 798, 922 |
| HgaI | GACGC | 2 cut(s) | 271, 780 |
| HhaI | GCGC | 6 cut(s) | 80, 119, 202, 705, 741, 1016 |
| Hin1I | GRCGYC | 5 cut(s) | 78, 282, 415, 703, 739 |
| Hin1II | CATG | 2 cut(s) | 128, 471 |
| Hin6I | GCGC | 6 cut(s) | 78, 117, 200, 703, 739, 1014 |
| HinP1I | GCGC | 6 cut(s) | 78, 117, 200, 703, 739, 1014 |
| HinfI | GANTC | 2 cut(s) | 99, 552 |
| HpaII | CCGG | 5 cut(s) | 296, 707, 780, 798, 922 |
| HphI | GGTGA | 1 cut(s) | 603 |
| Hpy188I | TCNGA | 5 cut(s) | 327, 868, 908, 976, 992 |
| Hpy188III | TCNNGA | 4 cut(s) | 96, 125, 335, 930 |
| Hpy99I | CGWCG | 4 cut(s) | 209, 872, 908, 954 |
| HpyAV | CCTTC | 7 cut(s) | 26, 113, 126, 236, 609, 728, 867 |
| HpyCH4III | ACNGT | 1 cut(s) | 59 |
| HpyCH4IV | ACGT | 1 cut(s) | 415 |
| HpyCH4V | TGCA | 3 cut(s) | 503, 545, 678 |
| HpyF3I | CTNAG | 4 cut(s) | 286, 312, 520, 606 |
| HpySE526I | ACGT | 1 cut(s) | 415 |
| Hsp92I | GRCGYC | 5 cut(s) | 78, 282, 415, 703, 739 |
| Hsp92II | CATG | 2 cut(s) | 128, 471 |
| HspAI | GCGC | 6 cut(s) | 78, 117, 200, 703, 739, 1014 |
| KasI | GGCGCC | 3 cut(s) | 77, 702, 738 |
| KflI | GGGWCCC | 1 cut(s) | 877 |
| KroI | GCCGGC | 1 cut(s) | 779 |
| KroNI | GCCGGC | 1 cut(s) | 781 |
| KspI | CCGCGG | 1 cut(s) | 422 |
| Kzo9I | GATC | 4 cut(s) | 92, 490, 992, 1005 |
| LguI | GCTCTTC | 1 cut(s) | 301 |
| LmnI | GCTCC | 5 cut(s) | 50, 137, 455, 482, 506 |
| Lsp1109I | GCAGC | 6 cut(s) | 302, 487, 557, 614, 856, 1044 |
| MaeII | ACGT | 1 cut(s) | 415 |
| MaeIII | GTNAC | 3 cut(s) | 259, 447, 596 |
| MalI | GATC | 4 cut(s) | 94, 492, 994, 1007 |
| MbiI | CCGCTC | 5 cut(s) | 140, 167, 380, 458, 509 |
| MboI | GATC | 4 cut(s) | 92, 490, 992, 1005 |
| MboII | GAAGA | 2 cut(s) | 41, 318 |
| MfeI | CAATTG | 1 cut(s) | 211 |
| MhlI | GDGCHC | 2 cut(s) | 20, 313 |
| MlsI | TGGCCA | 2 cut(s) | 438, 859 |
| MluCI | AATT | 1 cut(s) | 211 |
| MluNI | TGGCCA | 2 cut(s) | 438, 859 |
| Mly113I | GGCGCC | 3 cut(s) | 78, 703, 739 |
| MlyI | GAGTC | 2 cut(s) | 93, 561 |
| MmeI | TCCRAC | 4 cut(s) | 460, 886, 891, 999 |
| Mox20I | TGGCCA | 2 cut(s) | 438, 859 |
| MroNI | GCCGGC | 1 cut(s) | 779 |
| MscI | TGGCCA | 2 cut(s) | 438, 859 |
| MseI | TTAA | 1 cut(s) | 670 |
| MslI | CAYNNNNRTG | 1 cut(s) | 540 |
| Msp20I | TGGCCA | 2 cut(s) | 438, 859 |
| MspA1I | CMGCKG | 7 cut(s) | 421, 548, 627, 639, 847, 1026, 1054 |
| MspCI | CTTAAG | 1 cut(s) | 669 |
| MspI | CCGG | 5 cut(s) | 296, 707, 780, 798, 922 |
| MspR9I | CCNGG | 6 cut(s) | 296, 453, 707, 708, 817, 944 |
| MunI | CAATTG | 1 cut(s) | 211 |
| Mva1269I | GAATGC | 2 cut(s) | 648, 680 |
| MvaI | CCWGG | 3 cut(s) | 453, 817, 944 |
| MvnI | CGCG | 3 cut(s) | 200, 421, 1014 |
| NaeI | GCCGGC | 1 cut(s) | 781 |
| NarI | GGCGCC | 3 cut(s) | 78, 703, 739 |
| NciI | CCSGG | 3 cut(s) | 296, 707, 708 |
| NdeII | GATC | 4 cut(s) | 92, 490, 992, 1005 |
| NgoMIV | GCCGGC | 1 cut(s) | 779 |
| NlaIII | CATG | 2 cut(s) | 128, 471 |
| NlaIV | GGNNCC | 9 cut(s) | 17, 18, 79, 704, 740, 878, 879, 956, 989 |
| NmeAIII | GCCGAG | 2 cut(s) | 134, 213 |
| NmuCI | GTSAC | 1 cut(s) | 447 |
| NotI | GCGGCCGC | 1 cut(s) | 631 |
| NspI | RCATGY | 1 cut(s) | 471 |
| PagI | TCATGA | 1 cut(s) | 124 |
| PciI | ACATGT | 1 cut(s) | 467 |
| PciSI | GCTCTTC | 1 cut(s) | 301 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 271, 912 |
| PctI | GAATGC | 2 cut(s) | 648, 680 |
| PdiI | GCCGGC | 1 cut(s) | 781 |
| PflFI | GACNNNGTC | 2 cut(s) | 750, 902 |
| Ple19I | CGATCG | 1 cut(s) | 1008 |
| PleI | GAGTC | 2 cut(s) | 93, 560 |
| PluTI | GGCGCC | 3 cut(s) | 81, 706, 742 |
| PpsI | GAGTC | 2 cut(s) | 93, 560 |
| PpuMI | RGGWCCY | 1 cut(s) | 877 |
| PscI | ACATGT | 1 cut(s) | 467 |
| PshAI | GACNNNNGTC | 1 cut(s) | 807 |
| Psp124BI | GAGCTC | 1 cut(s) | 313 |
| Psp5II | RGGWCCY | 1 cut(s) | 877 |
| Psp6I | CCWGG | 3 cut(s) | 451, 815, 942 |
| PspEI | GGTNACC | 1 cut(s) | 596 |
| PspFI | CCCAGC | 4 cut(s) | 170, 584, 880, 892 |
| PspGI | CCWGG | 3 cut(s) | 451, 815, 942 |
| PspN4I | GGNNCC | 9 cut(s) | 17, 18, 79, 704, 740, 878, 879, 956, 989 |
| PspOMI | GGGCCC | 1 cut(s) | 16 |
| PspPI | GGNCC | 8 cut(s) | 16, 17, 35, 709, 819, 877, 946, 988 |
| PspPPI | RGGWCCY | 1 cut(s) | 877 |
| PstI | CTGCAG | 1 cut(s) | 505 |
| PsyI | GACNNNGTC | 2 cut(s) | 750, 902 |
| PvuI | CGATCG | 1 cut(s) | 1008 |
| RsaI | GTAC | 2 cut(s) | 623, 833 |
| RsaNI | GTAC | 2 cut(s) | 622, 832 |
| RseI | CAYNNNNRTG | 1 cut(s) | 540 |
| SacI | GAGCTC | 1 cut(s) | 313 |
| SacII | CCGCGG | 1 cut(s) | 422 |
| SapI | GCTCTTC | 1 cut(s) | 301 |
| SaqAI | TTAA | 1 cut(s) | 670 |
| Sau3AI | GATC | 4 cut(s) | 92, 490, 992, 1005 |
| Sau96I | GGNCC | 8 cut(s) | 16, 17, 35, 709, 819, 877, 946, 988 |
| SchI | GAGTC | 2 cut(s) | 93, 561 |
| ScrFI | CCNGG | 6 cut(s) | 296, 453, 707, 708, 817, 944 |
| SduI | GDGCHC | 2 cut(s) | 20, 313 |
| SfcI | CTRYAG | 1 cut(s) | 501 |
| SfoI | GGCGCC | 3 cut(s) | 79, 704, 740 |
| Sfr303I | CCGCGG | 1 cut(s) | 422 |
| SgrBI | CCGCGG | 1 cut(s) | 422 |
| SinI | GGWCC | 3 cut(s) | 819, 877, 988 |
| SmaI | CCCGGG | 1 cut(s) | 708 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 540 |
| SmlI | CTYRAG | 1 cut(s) | 669 |
| SmoI | CTYRAG | 1 cut(s) | 669 |
| SrfI | GCCCGGGC | 1 cut(s) | 708 |
| Sse9I | AATT | 1 cut(s) | 211 |
| SspDI | GGCGCC | 3 cut(s) | 77, 702, 738 |
| SstI | GAGCTC | 1 cut(s) | 313 |
| StyD4I | CCNGG | 6 cut(s) | 294, 451, 705, 706, 815, 942 |
| TaaI | ACNGT | 1 cut(s) | 59 |
| TaiI | ACGT | 1 cut(s) | 418 |
| TaqII | GACCGA | 2 cut(s) | 699, 998 |
| TasI | AATT | 1 cut(s) | 211 |
| Tru1I | TTAA | 1 cut(s) | 670 |
| Tru9I | TTAA | 1 cut(s) | 670 |
| TscAI | CASTG | 1 cut(s) | 685 |
| TseFI | GTSAC | 1 cut(s) | 447 |
| TseI | GCWGC | 6 cut(s) | 290, 500, 545, 627, 844, 1032 |
| Tsp45I | GTSAC | 1 cut(s) | 447 |
| TspDTI | ATGAA | 3 cut(s) | 113, 478, 591 |
| TspGWI | ACGGA | 1 cut(s) | 885 |
| TspMI | CCCGGG | 1 cut(s) | 706 |
| TspRI | CASTG | 1 cut(s) | 685 |
| Tth111I | GACNNNGTC | 2 cut(s) | 750, 902 |
| Vha464I | CTTAAG | 1 cut(s) | 669 |
| VpaK11BI | GGWCC | 3 cut(s) | 819, 877, 988 |
| XceI | RCATGY | 1 cut(s) | 471 |
| XmaI | CCCGGG | 1 cut(s) | 706 |
| ZraI | GACGTC | 1 cut(s) | 416 |