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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 355, 413, 551 |
| AccII | CGCG | 2 cut(s) | 537, 557 |
| AclWI | GGATC | 1 cut(s) | 360 |
| AcoI | YGGCCR | 1 cut(s) | 315 |
| AcsI | RAATTY | 3 cut(s) | 21, 136, 245 |
| AcyI | GRCGYC | 1 cut(s) | 356 |
| AfaI | GTAC | 1 cut(s) | 66 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 164, 230, 524, 579 |
| AgsI | TTSAA | 3 cut(s) | 124, 142, 578 |
| AleI | CACNNNNGTG | 1 cut(s) | 411 |
| AluBI | AGCT | 1 cut(s) | 127 |
| AluI | AGCT | 1 cut(s) | 127 |
| AlwI | GGATC | 1 cut(s) | 360 |
| Ama87I | CYCGRG | 1 cut(s) | 584 |
| AoxI | GGCC | 3 cut(s) | 117, 315, 322 |
| ApeKI | GCWGC | 3 cut(s) | 85, 464, 498 |
| ApoI | RAATTY | 3 cut(s) | 21, 136, 245 |
| AspLEI | GCGC | 2 cut(s) | 76, 358 |
| AspS9I | GGNCC | 6 cut(s) | 117, 168, 269, 323, 340, 481 |
| AsuC2I | CCSGG | 2 cut(s) | 114, 344 |
| AsuHPI | GGTGA | 4 cut(s) | 147, 275, 398, 580 |
| AvaI | CYCGRG | 1 cut(s) | 584 |
| AvaII | GGWCC | 4 cut(s) | 168, 269, 340, 481 |
| BaeGI | GKGCMC | 1 cut(s) | 518 |
| BanI | GGYRCC | 3 cut(s) | 355, 413, 551 |
| BanII | GRGCYC | 1 cut(s) | 585 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 469, 501 |
| BauI | CACGAG | 1 cut(s) | 311 |
| BbvI | GCAGC | 3 cut(s) | 97, 451, 510 |
| BccI | CCATC | 2 cut(s) | 184, 209 |
| BcnI | CCSGG | 2 cut(s) | 114, 344 |
| BfoI | RGCGCY | 2 cut(s) | 77, 359 |
| BisI | GCNGC | 6 cut(s) | 86, 110, 395, 465, 499, 555 |
| BlsI | GCNGC | 6 cut(s) | 87, 111, 396, 466, 500, 556 |
| Bme1390I | CCNGG | 2 cut(s) | 114, 344 |
| Bme18I | GGWCC | 4 cut(s) | 168, 269, 340, 481 |
| BmeT110I | CYCGRG | 1 cut(s) | 584 |
| BmgT120I | GGNCC | 6 cut(s) | 117, 168, 269, 323, 340, 481 |
| BmiI | GGNNCC | 7 cut(s) | 118, 169, 342, 357, 415, 483, 553 |
| BmrFI | CCNGG | 2 cut(s) | 114, 344 |
| BmsI | GCATC | 1 cut(s) | 363 |
| BpuMI | CCSGG | 2 cut(s) | 114, 344 |
| BsaAI | YACGTR | 1 cut(s) | 68 |
| BsaHI | GRCGYC | 1 cut(s) | 356 |
| BsaJI | CCNNGG | 7 cut(s) | 77, 113, 158, 265, 378, 409, 555 |
| BsaWI | WCCGGW | 1 cut(s) | 427 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 288, 318 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 164, 230, 524, 579 |
| Bse118I | RCCGGY | 3 cut(s) | 59, 467, 524 |
| BseDI | CCNNGG | 7 cut(s) | 77, 113, 158, 265, 378, 409, 555 |
| BseGI | GGATG | 1 cut(s) | 195 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 164, 230, 524, 579 |
| BseSI | GKGCMC | 1 cut(s) | 518 |
| BseXI | GCAGC | 3 cut(s) | 97, 451, 510 |
| BsgI | GTGCAG | 1 cut(s) | 104 |
| Bsh1236I | CGCG | 2 cut(s) | 537, 557 |
| Bsh1285I | CGRYCG | 2 cut(s) | 336, 432 |
| BshFI | GGCC | 3 cut(s) | 119, 317, 324 |
| BshNI | GGYRCC | 3 cut(s) | 355, 413, 551 |
| BsiEI | CGRYCG | 2 cut(s) | 336, 432 |
| BsiHKCI | CYCGRG | 1 cut(s) | 584 |
| BsiSI | CCGG | 7 cut(s) | 60, 113, 187, 344, 428, 468, 525 |
| BslFI | GGGAC | 2 cut(s) | 181, 467 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 164, 230, 524, 579 |
| BsmFI | GGGAC | 2 cut(s) | 181, 467 |
| BsmI | GAATGC | 1 cut(s) | 104 |
| BsnI | GGCC | 3 cut(s) | 119, 317, 324 |
| BsoBI | CYCGRG | 1 cut(s) | 584 |
| Bsp1286I | GDGCHC | 2 cut(s) | 518, 585 |
| Bsp143I | GATC | 3 cut(s) | 280, 333, 365 |
| Bsp19I | CCATGG | 1 cut(s) | 265 |
| Bsp68I | TCGCGA | 1 cut(s) | 537 |
| BspANI | GGCC | 3 cut(s) | 119, 317, 324 |
| BspFNI | CGCG | 2 cut(s) | 537, 557 |
| BspLI | GGNNCC | 7 cut(s) | 118, 169, 342, 357, 415, 483, 553 |
| BspPI | GGATC | 1 cut(s) | 360 |
| BspT107I | GGYRCC | 3 cut(s) | 355, 413, 551 |
| BsrFI | RCCGGY | 3 cut(s) | 59, 467, 524 |
| BssAI | RCCGGY | 3 cut(s) | 59, 467, 524 |
| BssECI | CCNNGG | 7 cut(s) | 77, 113, 158, 265, 378, 409, 555 |
| BssMI | GATC | 3 cut(s) | 280, 333, 365 |
| BssNI | GRCGYC | 1 cut(s) | 356 |
| BssSI | CACGAG | 1 cut(s) | 311 |
| BssT1I | CCWWGG | 4 cut(s) | 77, 158, 265, 409 |
| Bst2BI | CACGAG | 1 cut(s) | 311 |
| Bst4CI | ACNGT | 2 cut(s) | 422, 574 |
| BstACI | GRCGYC | 1 cut(s) | 356 |
| BstBAI | YACGTR | 1 cut(s) | 68 |
| BstC8I | GCNNGC | 4 cut(s) | 90, 326, 469, 518 |
| BstDSI | CCRYGG | 3 cut(s) | 265, 378, 555 |
| BstEII | GGTNACC | 1 cut(s) | 568 |
| BstF5I | GGATG | 1 cut(s) | 195 |
| BstFNI | CGCG | 2 cut(s) | 537, 557 |
| BstH2I | RGCGCY | 2 cut(s) | 77, 359 |
| BstHHI | GCGC | 2 cut(s) | 76, 358 |
| BstKTI | GATC | 3 cut(s) | 283, 336, 368 |
| BstMBI | GATC | 3 cut(s) | 280, 333, 365 |
| BstMCI | CGRYCG | 2 cut(s) | 336, 432 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 82, 382, 391, 534, 563 |
| BstNSI | RCATGY | 1 cut(s) | 305 |
| BstPI | GGTNACC | 1 cut(s) | 568 |
| BstSCI | CCNGG | 2 cut(s) | 112, 342 |
| BstSLI | GKGCMC | 1 cut(s) | 518 |
| BstUI | CGCG | 2 cut(s) | 537, 557 |
| BstV1I | GCAGC | 3 cut(s) | 97, 451, 510 |
| BsuRI | GGCC | 3 cut(s) | 119, 317, 324 |
| BtgI | CCRYGG | 3 cut(s) | 265, 378, 555 |
| BtsCI | GGATG | 1 cut(s) | 195 |
| BtuMI | TCGCGA | 1 cut(s) | 537 |
| Cac8I | GCNNGC | 4 cut(s) | 90, 326, 469, 518 |
| CfoI | GCGC | 2 cut(s) | 76, 358 |
| Cfr10I | RCCGGY | 3 cut(s) | 59, 467, 524 |
| Cfr13I | GGNCC | 6 cut(s) | 117, 168, 269, 323, 340, 481 |
| Cfr42I | CCGCGG | 1 cut(s) | 558 |
| Csp6I | GTAC | 1 cut(s) | 65 |
| CviAII | CATG | 7 cut(s) | 151, 164, 266, 273, 302, 391, 458 |
| CviJI | RGCY | 8 cut(s) | 59, 119, 127, 264, 317, 324, 464, 583 |
| CviKI_1 | RGCY | 8 cut(s) | 59, 119, 127, 264, 317, 324, 464, 583 |
| CviQI | GTAC | 1 cut(s) | 65 |
| DinI | GGCGCC | 1 cut(s) | 357 |
| DpnI | GATC | 3 cut(s) | 282, 335, 367 |
| DpnII | GATC | 3 cut(s) | 280, 333, 365 |
| EaeI | YGGCCR | 1 cut(s) | 315 |
| Eco130I | CCWWGG | 4 cut(s) | 77, 158, 265, 409 |
| Eco24I | GRGCYC | 1 cut(s) | 585 |
| Eco47I | GGWCC | 4 cut(s) | 168, 269, 340, 481 |
| Eco88I | CYCGRG | 1 cut(s) | 584 |
| Eco91I | GGTNACC | 1 cut(s) | 568 |
| EcoO109I | RGGNCCY | 3 cut(s) | 117, 168, 481 |
| EcoO65I | GGTNACC | 1 cut(s) | 568 |
| EcoT14I | CCWWGG | 4 cut(s) | 77, 158, 265, 409 |
| EcoT38I | GRGCYC | 1 cut(s) | 585 |
| EgeI | GGCGCC | 1 cut(s) | 357 |
| EheI | GGCGCC | 1 cut(s) | 357 |
| ErhI | CCWWGG | 4 cut(s) | 77, 158, 265, 409 |
| FaeI | CATG | 7 cut(s) | 154, 167, 269, 276, 305, 394, 461 |
| FaqI | GGGAC | 2 cut(s) | 181, 467 |
| FatI | CATG | 7 cut(s) | 150, 163, 265, 272, 301, 390, 457 |
| FauI | CCCGC | 5 cut(s) | 81, 333, 433, 464, 525 |
| Fnu4HI | GCNGC | 6 cut(s) | 86, 110, 395, 465, 499, 555 |
| FokI | GGATG | 1 cut(s) | 202 |
| FriOI | GRGCYC | 1 cut(s) | 585 |
| Fsp4HI | GCNGC | 6 cut(s) | 86, 110, 395, 465, 499, 555 |
| GlaI | GCGC | 2 cut(s) | 75, 357 |
| GluI | GCNGC | 6 cut(s) | 86, 110, 395, 465, 499, 555 |
| HaeII | RGCGCY | 2 cut(s) | 77, 359 |
| HaeIII | GGCC | 3 cut(s) | 119, 317, 324 |
| HapII | CCGG | 7 cut(s) | 60, 113, 187, 344, 428, 468, 525 |
| HhaI | GCGC | 2 cut(s) | 76, 358 |
| Hin1I | GRCGYC | 1 cut(s) | 356 |
| Hin1II | CATG | 7 cut(s) | 154, 167, 269, 276, 305, 394, 461 |
| Hin6I | GCGC | 2 cut(s) | 74, 356 |
| HinP1I | GCGC | 2 cut(s) | 74, 356 |
| HinfI | GANTC | 3 cut(s) | 104, 146, 361 |
| HpaII | CCGG | 7 cut(s) | 60, 113, 187, 344, 428, 468, 525 |
| HphI | GGTGA | 4 cut(s) | 147, 275, 398, 580 |
| Hpy166II | GTNNAC | 2 cut(s) | 65, 340 |
| Hpy188I | TCNGA | 3 cut(s) | 14, 296, 370 |
| Hpy188III | TCNNGA | 4 cut(s) | 133, 232, 259, 536 |
| Hpy8I | GTNNAC | 2 cut(s) | 65, 340 |
| Hpy99I | CGWCG | 1 cut(s) | 422 |
| HpyAV | CCTTC | 7 cut(s) | 130, 181, 238, 314, 495, 533, 572 |
| HpyCH4III | ACNGT | 2 cut(s) | 422, 574 |
| HpyCH4IV | ACGT | 1 cut(s) | 67 |
| HpyCH4V | TGCA | 3 cut(s) | 47, 85, 498 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 82, 382, 391, 534, 563 |
| HpySE526I | ACGT | 1 cut(s) | 67 |
| Hsp92I | GRCGYC | 1 cut(s) | 356 |
| Hsp92II | CATG | 7 cut(s) | 154, 167, 269, 276, 305, 394, 461 |
| HspAI | GCGC | 2 cut(s) | 74, 356 |
| KasI | GGCGCC | 1 cut(s) | 355 |
| KroI | GCCGGC | 1 cut(s) | 467 |
| KroNI | GCCGGC | 1 cut(s) | 469 |
| KspI | CCGCGG | 1 cut(s) | 558 |
| Kzo9I | GATC | 3 cut(s) | 280, 333, 365 |
| LpnPI | CCDG | 7 cut(s) | 73, 126, 200, 357, 441, 481, 538 |
| Lsp1109I | GCAGC | 3 cut(s) | 97, 451, 510 |
| LweI | GCATC | 1 cut(s) | 363 |
| MaeII | ACGT | 1 cut(s) | 67 |
| MaeIII | GTNAC | 3 cut(s) | 153, 177, 568 |
| MalI | GATC | 3 cut(s) | 282, 335, 367 |
| MboI | GATC | 3 cut(s) | 280, 333, 365 |
| MhlI | GDGCHC | 2 cut(s) | 518, 585 |
| MluCI | AATT | 4 cut(s) | 21, 136, 245, 287 |
| Mly113I | GGCGCC | 1 cut(s) | 356 |
| MlyI | GAGTC | 2 cut(s) | 113, 370 |
| MmeI | TCCRAC | 1 cut(s) | 274 |
| MnlI | CCTC | 3 cut(s) | 320, 340, 553 |
| MroNI | GCCGGC | 1 cut(s) | 467 |
| MseI | TTAA | 1 cut(s) | 237 |
| MslI | CAYNNNNRTG | 1 cut(s) | 411 |
| MspA1I | CMGCKG | 2 cut(s) | 88, 557 |
| MspI | CCGG | 7 cut(s) | 60, 113, 187, 344, 428, 468, 525 |
| MspR9I | CCNGG | 2 cut(s) | 114, 344 |
| Mva1269I | GAATGC | 1 cut(s) | 104 |
| MvnI | CGCG | 2 cut(s) | 537, 557 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 82, 382, 391, 534, 563 |
| NaeI | GCCGGC | 1 cut(s) | 469 |
| NarI | GGCGCC | 1 cut(s) | 356 |
| NciI | CCSGG | 2 cut(s) | 114, 344 |
| NcoI | CCATGG | 1 cut(s) | 265 |
| NdeII | GATC | 3 cut(s) | 280, 333, 365 |
| NgoMIV | GCCGGC | 1 cut(s) | 467 |
| NlaIII | CATG | 7 cut(s) | 154, 167, 269, 276, 305, 394, 461 |
| NlaIV | GGNNCC | 7 cut(s) | 118, 169, 342, 357, 415, 483, 553 |
| NmeAIII | GCCGAG | 2 cut(s) | 302, 384 |
| NmuCI | GTSAC | 2 cut(s) | 153, 568 |
| NruI | TCGCGA | 1 cut(s) | 537 |
| NspI | RCATGY | 1 cut(s) | 305 |
| OliI | CACNNNNGTG | 1 cut(s) | 411 |
| PaeR7I | CTCGAG | 1 cut(s) | 584 |
| PctI | GAATGC | 1 cut(s) | 104 |
| PdiI | GCCGGC | 1 cut(s) | 469 |
| PfeI | GAWTC | 1 cut(s) | 146 |
| PkrI | GCNGC | 6 cut(s) | 87, 111, 396, 466, 500, 556 |
| Ple19I | CGATCG | 1 cut(s) | 336 |
| PleI | GAGTC | 2 cut(s) | 112, 369 |
| PluTI | GGCGCC | 1 cut(s) | 359 |
| PpsI | GAGTC | 2 cut(s) | 112, 369 |
| Ppu21I | YACGTR | 1 cut(s) | 68 |
| PpuMI | RGGWCCY | 2 cut(s) | 168, 481 |
| Psp5II | RGGWCCY | 2 cut(s) | 168, 481 |
| PspEI | GGTNACC | 1 cut(s) | 568 |
| PspN4I | GGNNCC | 7 cut(s) | 118, 169, 342, 357, 415, 483, 553 |
| PspPI | GGNCC | 6 cut(s) | 117, 168, 269, 323, 340, 481 |
| PspPPI | RGGWCCY | 2 cut(s) | 168, 481 |
| PspXI | VCTCGAGB | 1 cut(s) | 584 |
| PvuI | CGATCG | 1 cut(s) | 336 |
| RruI | TCGCGA | 1 cut(s) | 537 |
| RsaI | GTAC | 1 cut(s) | 66 |
| RsaNI | GTAC | 1 cut(s) | 65 |
| RseI | CAYNNNNRTG | 1 cut(s) | 411 |
| SacII | CCGCGG | 1 cut(s) | 558 |
| SaqAI | TTAA | 1 cut(s) | 237 |
| SatI | GCNGC | 6 cut(s) | 86, 110, 395, 465, 499, 555 |
| Sau3AI | GATC | 3 cut(s) | 280, 333, 365 |
| Sau96I | GGNCC | 6 cut(s) | 117, 168, 269, 323, 340, 481 |
| SchI | GAGTC | 2 cut(s) | 113, 370 |
| ScrFI | CCNGG | 2 cut(s) | 114, 344 |
| SduI | GDGCHC | 2 cut(s) | 518, 585 |
| SetI | ASST | 9 cut(s) | 43, 70, 129, 160, 173, 230, 256, 411, 483 |
| SfaNI | GCATC | 1 cut(s) | 363 |
| SfoI | GGCGCC | 1 cut(s) | 357 |
| Sfr274I | CTCGAG | 1 cut(s) | 584 |
| Sfr303I | CCGCGG | 1 cut(s) | 558 |
| SgrBI | CCGCGG | 1 cut(s) | 558 |
| SinI | GGWCC | 4 cut(s) | 168, 269, 340, 481 |
| SlaI | CTCGAG | 1 cut(s) | 584 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 411 |
| SmlI | CTYRAG | 1 cut(s) | 584 |
| SmoI | CTYRAG | 1 cut(s) | 584 |
| Sse9I | AATT | 4 cut(s) | 21, 136, 245, 287 |
| SspDI | GGCGCC | 1 cut(s) | 355 |
| StyD4I | CCNGG | 2 cut(s) | 112, 342 |
| StyI | CCWWGG | 4 cut(s) | 77, 158, 265, 409 |
| TaaI | ACNGT | 2 cut(s) | 422, 574 |
| TaiI | ACGT | 1 cut(s) | 70 |
| TaqI | TCGA | 5 cut(s) | 132, 242, 258, 364, 585 |
| TasI | AATT | 4 cut(s) | 21, 136, 245, 287 |
| TauI | GCSGC | 3 cut(s) | 112, 397, 557 |
| TfiI | GAWTC | 1 cut(s) | 146 |
| Tru1I | TTAA | 1 cut(s) | 237 |
| Tru9I | TTAA | 1 cut(s) | 237 |
| TseFI | GTSAC | 2 cut(s) | 153, 568 |
| TseI | GCWGC | 3 cut(s) | 85, 464, 498 |
| Tsp45I | GTSAC | 2 cut(s) | 153, 568 |
| VpaK11BI | GGWCC | 4 cut(s) | 168, 269, 340, 481 |
| XapI | RAATTY | 3 cut(s) | 21, 136, 245 |
| XceI | RCATGY | 1 cut(s) | 305 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 407 |
| XhoI | CTCGAG | 1 cut(s) | 584 |