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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 927 |
| AccB1I | GGYRCC | 1 cut(s) | 838 |
| AccBSI | CCGCTC | 3 cut(s) | 235, 406, 570 |
| AccII | CGCG | 1 cut(s) | 638 |
| AclWI | GGATC | 1 cut(s) | 488 |
| AcoI | YGGCCR | 3 cut(s) | 337, 465, 507 |
| AcsI | RAATTY | 1 cut(s) | 215 |
| AcyI | GRCGYC | 2 cut(s) | 69, 707 |
| AfaI | GTAC | 3 cut(s) | 97, 209, 617 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 235, 556, 752, 792, 817, 828, 835, 853 |
| AgsI | TTSAA | 2 cut(s) | 494, 601 |
| AjnI | CCWGG | 2 cut(s) | 745, 772 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 230, 262 |
| AluBI | AGCT | 7 cut(s) | 23, 161, 327, 364, 448, 626, 670 |
| AluI | AGCT | 7 cut(s) | 23, 161, 327, 364, 448, 626, 670 |
| Alw21I | GWGCWC | 2 cut(s) | 366, 783 |
| Alw26I | GTCTC | 2 cut(s) | 95, 862 |
| Alw44I | GTGCAC | 1 cut(s) | 779 |
| AlwI | GGATC | 1 cut(s) | 488 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 142 |
| AoxI | GGCC | 9 cut(s) | 11, 111, 330, 337, 465, 507, 645, 819, 864 |
| ApaI | GGGCCC | 1 cut(s) | 115 |
| ApaLI | GTGCAC | 1 cut(s) | 779 |
| ApeKI | GCWGC | 4 cut(s) | 20, 158, 161, 545 |
| ApoI | RAATTY | 1 cut(s) | 215 |
| AspLEI | GCGC | 3 cut(s) | 376, 928, 959 |
| AspS9I | GGNCC | 6 cut(s) | 111, 112, 714, 756, 864, 900 |
| AsuC2I | CCSGG | 3 cut(s) | 712, 812, 889 |
| AsuHPI | GGTGA | 4 cut(s) | 163, 309, 535, 992 |
| AsuNHI | GCTAGC | 1 cut(s) | 719 |
| AvaII | GGWCC | 3 cut(s) | 714, 756, 900 |
| BaeGI | GKGCMC | 3 cut(s) | 115, 689, 783 |
| BalI | TGGCCA | 1 cut(s) | 339 |
| BanI | GGYRCC | 1 cut(s) | 838 |
| BanII | GRGCYC | 2 cut(s) | 115, 366 |
| BauI | CACGAG | 1 cut(s) | 359 |
| Bbv12I | GWGCWC | 2 cut(s) | 366, 783 |
| BbvCI | CCTCAGC | 1 cut(s) | 519 |
| BbvI | GCAGC | 4 cut(s) | 32, 148, 170, 532 |
| BccI | CCATC | 9 cut(s) | 113, 278, 348, 395, 454, 737, 911, 945, 976 |
| BceAI | ACGGC | 1 cut(s) | 721 |
| BciT130I | CCWGG | 2 cut(s) | 747, 774 |
| BclI | TGATCA | 1 cut(s) | 802 |
| BcnI | CCSGG | 3 cut(s) | 712, 812, 889 |
| BcoDI | GTCTC | 2 cut(s) | 95, 862 |
| BfaI | CTAG | 5 cut(s) | 230, 371, 720, 861, 996 |
| BfmI | CTRYAG | 2 cut(s) | 156, 308 |
| BfoI | RGCGCY | 1 cut(s) | 377 |
| Bme1390I | CCNGG | 5 cut(s) | 712, 747, 774, 812, 889 |
| Bme18I | GGWCC | 3 cut(s) | 714, 756, 900 |
| BmgT120I | GGNCC | 6 cut(s) | 111, 112, 714, 756, 864, 900 |
| BmiI | GGNNCC | 9 cut(s) | 112, 113, 289, 428, 715, 757, 840, 901, 934 |
| BmrFI | CCNGG | 5 cut(s) | 712, 747, 774, 812, 889 |
| BmrI | ACTGGG | 2 cut(s) | 544, 841 |
| BmsI | GCATC | 2 cut(s) | 294, 583 |
| BmtI | GCTAGC | 1 cut(s) | 723 |
| BmuI | ACTGGG | 2 cut(s) | 544, 841 |
| Bpu10I | CCTNAGC | 1 cut(s) | 519 |
| BpuEI | CTTGAG | 1 cut(s) | 422 |
| BpuMI | CCSGG | 3 cut(s) | 712, 812, 889 |
| BsaHI | GRCGYC | 2 cut(s) | 69, 707 |
| BsaI | GGTCTC | 2 cut(s) | 95, 862 |
| BsaJI | CCNNGG | 5 cut(s) | 147, 468, 745, 746, 759 |
| BsaWI | WCCGGW | 1 cut(s) | 828 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 230, 260 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 235, 556, 752, 792, 817, 828, 835, 853 |
| Bse118I | RCCGGY | 2 cut(s) | 423, 647 |
| Bse1I | ACTGG | 4 cut(s) | 97, 165, 550, 847 |
| BseBI | CCWGG | 2 cut(s) | 747, 774 |
| BseDI | CCNNGG | 5 cut(s) | 147, 468, 745, 746, 759 |
| BseGI | GGATG | 3 cut(s) | 289, 598, 729 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 235, 556, 752, 792, 817, 828, 835, 853 |
| BseMII | CTCAG | 3 cut(s) | 510, 600, 843 |
| BseNI | ACTGG | 4 cut(s) | 97, 165, 550, 847 |
| BseRI | GAGGAG | 1 cut(s) | 580 |
| BseSI | GKGCMC | 3 cut(s) | 115, 689, 783 |
| BseXI | GCAGC | 4 cut(s) | 32, 148, 170, 532 |
| BsgI | GTGCAG | 1 cut(s) | 197 |
| Bsh1236I | CGCG | 1 cut(s) | 638 |
| Bsh1285I | CGRYCG | 1 cut(s) | 893 |
| BshFI | GGCC | 9 cut(s) | 13, 113, 332, 339, 467, 509, 647, 821, 866 |
| BshNI | GGYRCC | 1 cut(s) | 838 |
| BsiEI | CGRYCG | 1 cut(s) | 893 |
| BsiHKAI | GWGCWC | 2 cut(s) | 366, 783 |
| BsiSI | CCGG | 8 cut(s) | 424, 430, 648, 711, 786, 812, 829, 889 |
| BslFI | GGGAC | 1 cut(s) | 913 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 235, 556, 752, 792, 817, 828, 835, 853 |
| BsmAI | GTCTC | 2 cut(s) | 95, 862 |
| BsmFI | GGGAC | 1 cut(s) | 913 |
| BsnI | GGCC | 9 cut(s) | 13, 113, 332, 339, 467, 509, 647, 821, 866 |
| Bso31I | GGTCTC | 2 cut(s) | 95, 862 |
| Bsp120I | GGGCCC | 1 cut(s) | 111 |
| Bsp1286I | GDGCHC | 4 cut(s) | 115, 366, 689, 783 |
| Bsp143I | GATC | 2 cut(s) | 480, 802 |
| BspANI | GGCC | 9 cut(s) | 13, 113, 332, 339, 467, 509, 647, 821, 866 |
| BspCNI | CTCAG | 3 cut(s) | 511, 601, 844 |
| BspFNI | CGCG | 1 cut(s) | 638 |
| BspHI | TCATGA | 2 cut(s) | 805, 906 |
| BspLI | GGNNCC | 9 cut(s) | 112, 113, 289, 428, 715, 757, 840, 901, 934 |
| BspMAI | CTGCAG | 1 cut(s) | 160 |
| BspOI | GCTAGC | 1 cut(s) | 723 |
| BspPI | GGATC | 1 cut(s) | 488 |
| BspQI | GCTCTTC | 1 cut(s) | 371 |
| BspT107I | GGYRCC | 1 cut(s) | 838 |
| BspTNI | GGTCTC | 2 cut(s) | 95, 862 |
| BsrBI | CCGCTC | 3 cut(s) | 235, 406, 570 |
| BsrFI | RCCGGY | 2 cut(s) | 423, 647 |
| BsrI | ACTGG | 4 cut(s) | 97, 165, 550, 847 |
| BssAI | RCCGGY | 2 cut(s) | 423, 647 |
| BssECI | CCNNGG | 5 cut(s) | 147, 468, 745, 746, 759 |
| BssMI | GATC | 2 cut(s) | 480, 802 |
| BssNI | GRCGYC | 2 cut(s) | 69, 707 |
| BssSI | CACGAG | 1 cut(s) | 359 |
| BssT1I | CCWWGG | 1 cut(s) | 468 |
| Bst2BI | CACGAG | 1 cut(s) | 359 |
| Bst2UI | CCWGG | 2 cut(s) | 747, 774 |
| Bst4CI | ACNGT | 3 cut(s) | 151, 321, 539 |
| Bst6I | CTCTTC | 2 cut(s) | 371, 521 |
| BstACI | GRCGYC | 2 cut(s) | 69, 707 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 142, 593 |
| BstC8I | GCNNGC | 5 cut(s) | 115, 138, 624, 721, 779 |
| BstDEI | CTNAG | 3 cut(s) | 519, 609, 852 |
| BstDSI | CCRYGG | 1 cut(s) | 147 |
| BstF5I | GGATG | 3 cut(s) | 289, 598, 729 |
| BstFNI | CGCG | 1 cut(s) | 638 |
| BstH2I | RGCGCY | 1 cut(s) | 377 |
| BstHHI | GCGC | 3 cut(s) | 376, 928, 959 |
| BstKTI | GATC | 2 cut(s) | 483, 805 |
| BstMAI | GTCTC | 2 cut(s) | 95, 862 |
| BstMBI | GATC | 2 cut(s) | 480, 802 |
| BstMCI | CGRYCG | 1 cut(s) | 893 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 52, 137, 142, 454, 515, 593, 644, 778 |
| BstNI | CCWGG | 2 cut(s) | 747, 774 |
| BstSCI | CCNGG | 5 cut(s) | 710, 745, 772, 810, 887 |
| BstSFI | CTRYAG | 2 cut(s) | 156, 308 |
| BstSLI | GKGCMC | 3 cut(s) | 115, 689, 783 |
| BstUI | CGCG | 1 cut(s) | 638 |
| BstV1I | GCAGC | 4 cut(s) | 32, 148, 170, 532 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 874 |
| BsuRI | GGCC | 9 cut(s) | 13, 113, 332, 339, 467, 509, 647, 821, 866 |
| BtgI | CCRYGG | 1 cut(s) | 147 |
| BtsCI | GGATG | 3 cut(s) | 289, 598, 729 |
| BtsI | GCAGTG | 2 cut(s) | 594, 796 |
| BtsIMutI | CAGTG | 4 cut(s) | 172, 544, 594, 796 |
| Cac8I | GCNNGC | 5 cut(s) | 115, 138, 624, 721, 779 |
| CaiI | CAGNNNCTG | 1 cut(s) | 142 |
| CciI | TCATGA | 2 cut(s) | 805, 906 |
| CfoI | GCGC | 3 cut(s) | 376, 928, 959 |
| Cfr10I | RCCGGY | 2 cut(s) | 423, 647 |
| Cfr13I | GGNCC | 6 cut(s) | 111, 112, 714, 756, 864, 900 |
| CseI | GACGC | 3 cut(s) | 77, 644, 696 |
| Csp6I | GTAC | 3 cut(s) | 96, 208, 616 |
| CviAII | CATG | 3 cut(s) | 806, 907, 929 |
| CviQI | GTAC | 3 cut(s) | 96, 208, 616 |
| DdeI | CTNAG | 3 cut(s) | 519, 609, 852 |
| DpnI | GATC | 2 cut(s) | 482, 804 |
| DpnII | GATC | 2 cut(s) | 480, 802 |
| EaeI | YGGCCR | 3 cut(s) | 337, 465, 507 |
| Eam1104I | CTCTTC | 2 cut(s) | 371, 521 |
| EarI | CTCTTC | 2 cut(s) | 371, 521 |
| EciI | GGCGGA | 1 cut(s) | 830 |
| Ecl136II | GAGCTC | 1 cut(s) | 364 |
| Eco130I | CCWWGG | 1 cut(s) | 468 |
| Eco147I | AGGCCT | 1 cut(s) | 13 |
| Eco24I | GRGCYC | 2 cut(s) | 115, 366 |
| Eco31I | GGTCTC | 2 cut(s) | 95, 862 |
| Eco47I | GGWCC | 3 cut(s) | 714, 756, 900 |
| Eco53kI | GAGCTC | 1 cut(s) | 364 |
| EcoICRI | GAGCTC | 1 cut(s) | 364 |
| EcoO109I | RGGNCCY | 2 cut(s) | 111, 756 |
| EcoRI | GAATTC | 1 cut(s) | 215 |
| EcoRII | CCWGG | 2 cut(s) | 745, 772 |
| EcoT14I | CCWWGG | 1 cut(s) | 468 |
| EcoT38I | GRGCYC | 2 cut(s) | 115, 366 |
| ErhI | CCWWGG | 1 cut(s) | 468 |
| FaeI | CATG | 3 cut(s) | 809, 910, 932 |
| FaiI | YATR | 6 cut(s) | 440, 807, 885, 908, 930, 953 |
| FaqI | GGGAC | 1 cut(s) | 913 |
| FatI | CATG | 3 cut(s) | 805, 906, 928 |
| FauI | CCCGC | 3 cut(s) | 122, 228, 746 |
| FbaI | TGATCA | 1 cut(s) | 802 |
| FokI | GGATG | 3 cut(s) | 296, 605, 716 |
| FriOI | GRGCYC | 2 cut(s) | 115, 366 |
| FspBI | CTAG | 5 cut(s) | 230, 371, 720, 861, 996 |
| FspI | TGCGCA | 1 cut(s) | 927 |
| GlaI | GCGC | 3 cut(s) | 375, 927, 958 |
| HaeII | RGCGCY | 1 cut(s) | 377 |
| HaeIII | GGCC | 9 cut(s) | 13, 113, 332, 339, 467, 509, 647, 821, 866 |
| HapII | CCGG | 8 cut(s) | 424, 430, 648, 711, 786, 812, 829, 889 |
| HgaI | GACGC | 3 cut(s) | 77, 644, 696 |
| HhaI | GCGC | 3 cut(s) | 376, 928, 959 |
| Hin1I | GRCGYC | 2 cut(s) | 69, 707 |
| Hin1II | CATG | 3 cut(s) | 809, 910, 932 |
| Hin6I | GCGC | 3 cut(s) | 374, 926, 957 |
| HinP1I | GCGC | 3 cut(s) | 374, 926, 957 |
| HindIII | AAGCTT | 1 cut(s) | 624 |
| HinfI | GANTC | 5 cut(s) | 194, 270, 500, 605, 832 |
| HpaII | CCGG | 8 cut(s) | 424, 430, 648, 711, 786, 812, 829, 889 |
| HphI | GGTGA | 4 cut(s) | 163, 309, 535, 992 |
| Hpy166II | GTNNAC | 1 cut(s) | 781 |
| Hpy188I | TCNGA | 6 cut(s) | 214, 610, 675, 853, 895, 942 |
| Hpy188III | TCNNGA | 3 cut(s) | 220, 806, 907 |
| Hpy8I | GTNNAC | 1 cut(s) | 781 |
| Hpy99I | CGWCG | 3 cut(s) | 71, 278, 353 |
| HpyAV | CCTTC | 4 cut(s) | 121, 607, 637, 697 |
| HpyCH4III | ACNGT | 3 cut(s) | 151, 321, 539 |
| HpyCH4IV | ACGT | 1 cut(s) | 663 |
| HpyCH4V | TGCA | 5 cut(s) | 46, 158, 178, 358, 781 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 52, 137, 142, 454, 515, 593, 644, 778 |
| HpyF3I | CTNAG | 3 cut(s) | 519, 609, 852 |
| HpySE526I | ACGT | 1 cut(s) | 663 |
| Hsp92I | GRCGYC | 2 cut(s) | 69, 707 |
| Hsp92II | CATG | 3 cut(s) | 809, 910, 932 |
| HspAI | GCGC | 3 cut(s) | 374, 926, 957 |
| Ksp22I | TGATCA | 1 cut(s) | 802 |
| Kzo9I | GATC | 2 cut(s) | 480, 802 |
| LguI | GCTCTTC | 1 cut(s) | 371 |
| LmnI | GCTCC | 3 cut(s) | 432, 567, 938 |
| Lsp1109I | GCAGC | 4 cut(s) | 32, 148, 170, 532 |
| LweI | GCATC | 2 cut(s) | 294, 583 |
| MaeI | CTAG | 5 cut(s) | 230, 371, 720, 861, 996 |
| MaeII | ACGT | 1 cut(s) | 663 |
| MaeIII | GTNAC | 3 cut(s) | 88, 151, 315 |
| MalI | GATC | 2 cut(s) | 482, 804 |
| MbiI | CCGCTC | 3 cut(s) | 235, 406, 570 |
| MboI | GATC | 2 cut(s) | 480, 802 |
| MboII | GAAGA | 4 cut(s) | 136, 358, 482, 538 |
| MfeI | CAATTG | 1 cut(s) | 690 |
| MhlI | GDGCHC | 4 cut(s) | 115, 366, 689, 783 |
| MlsI | TGGCCA | 1 cut(s) | 339 |
| MluCI | AATT | 3 cut(s) | 215, 690, 1000 |
| MluNI | TGGCCA | 1 cut(s) | 339 |
| MlyI | GAGTC | 4 cut(s) | 188, 494, 614, 826 |
| MmeI | TCCRAC | 2 cut(s) | 534, 873 |
| Mox20I | TGGCCA | 1 cut(s) | 339 |
| MscI | TGGCCA | 1 cut(s) | 339 |
| MseI | TTAA | 1 cut(s) | 474 |
| Msp20I | TGGCCA | 1 cut(s) | 339 |
| MspA1I | CMGCKG | 4 cut(s) | 23, 161, 448, 518 |
| MspI | CCGG | 8 cut(s) | 424, 430, 648, 711, 786, 812, 829, 889 |
| MspR9I | CCNGG | 5 cut(s) | 712, 747, 774, 812, 889 |
| MunI | CAATTG | 1 cut(s) | 690 |
| MvaI | CCWGG | 2 cut(s) | 747, 774 |
| MvnI | CGCG | 1 cut(s) | 638 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 52, 137, 142, 454, 515, 593, 644, 778 |
| NciI | CCSGG | 3 cut(s) | 712, 812, 889 |
| NdeII | GATC | 2 cut(s) | 480, 802 |
| NheI | GCTAGC | 1 cut(s) | 719 |
| NlaIII | CATG | 3 cut(s) | 809, 910, 932 |
| NlaIV | GGNNCC | 9 cut(s) | 112, 113, 289, 428, 715, 757, 840, 901, 934 |
| NmeAIII | GCCGAG | 2 cut(s) | 308, 740 |
| NmuCI | GTSAC | 2 cut(s) | 151, 315 |
| NsbI | TGCGCA | 1 cut(s) | 927 |
| PagI | TCATGA | 2 cut(s) | 805, 906 |
| PasI | CCCWGGG | 1 cut(s) | 746 |
| PceI | AGGCCT | 1 cut(s) | 13 |
| PciSI | GCTCTTC | 1 cut(s) | 371 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 203, 357, 638 |
| PfeI | GAWTC | 1 cut(s) | 270 |
| PleI | GAGTC | 4 cut(s) | 188, 494, 613, 826 |
| PpsI | GAGTC | 4 cut(s) | 188, 494, 613, 826 |
| PpuMI | RGGWCCY | 1 cut(s) | 756 |
| Psp124BI | GAGCTC | 1 cut(s) | 366 |
| Psp5II | RGGWCCY | 1 cut(s) | 756 |
| Psp6I | CCWGG | 2 cut(s) | 745, 772 |
| PspGI | CCWGG | 2 cut(s) | 745, 772 |
| PspN4I | GGNNCC | 9 cut(s) | 112, 113, 289, 428, 715, 757, 840, 901, 934 |
| PspOMI | GGGCCC | 1 cut(s) | 111 |
| PspPI | GGNCC | 6 cut(s) | 111, 112, 714, 756, 864, 900 |
| PspPPI | RGGWCCY | 1 cut(s) | 756 |
| PstI | CTGCAG | 1 cut(s) | 160 |
| PstNI | CAGNNNCTG | 1 cut(s) | 142 |
| PvuII | CAGCTG | 3 cut(s) | 23, 161, 448 |
| RsaI | GTAC | 3 cut(s) | 97, 209, 617 |
| RsaNI | GTAC | 3 cut(s) | 96, 208, 616 |
| SacI | GAGCTC | 1 cut(s) | 366 |
| SapI | GCTCTTC | 1 cut(s) | 371 |
| SaqAI | TTAA | 1 cut(s) | 474 |
| Sau3AI | GATC | 2 cut(s) | 480, 802 |
| Sau96I | GGNCC | 6 cut(s) | 111, 112, 714, 756, 864, 900 |
| SchI | GAGTC | 4 cut(s) | 188, 494, 614, 826 |
| ScrFI | CCNGG | 5 cut(s) | 712, 747, 774, 812, 889 |
| SduI | GDGCHC | 4 cut(s) | 115, 366, 689, 783 |
| SfaNI | GCATC | 2 cut(s) | 294, 583 |
| SfcI | CTRYAG | 2 cut(s) | 156, 308 |
| SinI | GGWCC | 3 cut(s) | 714, 756, 900 |
| SmlI | CTYRAG | 1 cut(s) | 401 |
| SmoI | CTYRAG | 1 cut(s) | 401 |
| Sse9I | AATT | 3 cut(s) | 215, 690, 1000 |
| SseBI | AGGCCT | 1 cut(s) | 13 |
| SspMI | CTAG | 5 cut(s) | 230, 371, 720, 861, 996 |
| SstI | GAGCTC | 1 cut(s) | 366 |
| StuI | AGGCCT | 1 cut(s) | 13 |
| StyD4I | CCNGG | 5 cut(s) | 710, 745, 772, 810, 887 |
| StyI | CCWWGG | 1 cut(s) | 468 |
| TaaI | ACNGT | 3 cut(s) | 151, 321, 539 |
| TaiI | ACGT | 1 cut(s) | 666 |
| TaqI | TCGA | 3 cut(s) | 273, 390, 483 |
| TasI | AATT | 3 cut(s) | 215, 690, 1000 |
| TauI | GCSGC | 7 cut(s) | 58, 61, 467, 509, 587, 641, 881 |
| TfiI | GAWTC | 1 cut(s) | 270 |
| Tru1I | TTAA | 1 cut(s) | 474 |
| Tru9I | TTAA | 1 cut(s) | 474 |
| TscAI | CASTG | 4 cut(s) | 172, 544, 594, 796 |
| TseFI | GTSAC | 2 cut(s) | 151, 315 |
| TseI | GCWGC | 4 cut(s) | 20, 158, 161, 545 |
| Tsp45I | GTSAC | 2 cut(s) | 151, 315 |
| TspGWI | ACGGA | 4 cut(s) | 113, 291, 337, 647 |
| TspRI | CASTG | 4 cut(s) | 172, 544, 594, 796 |
| VneI | GTGCAC | 1 cut(s) | 779 |
| VpaK11BI | GGWCC | 3 cut(s) | 714, 756, 900 |
| XapI | RAATTY | 1 cut(s) | 215 |
| XspI | CTAG | 5 cut(s) | 230, 371, 720, 861, 996 |