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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 482 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 528 |
| AccBSI | CCGCTC | 1 cut(s) | 618 |
| AccI | GTMKAC | 1 cut(s) | 315 |
| AccII | CGCG | 2 cut(s) | 34, 443 |
| AcoI | YGGCCR | 4 cut(s) | 94, 181, 297, 489 |
| AcuI | CTGAAG | 3 cut(s) | 377, 527, 708 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AfaI | GTAC | 1 cut(s) | 556 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 83, 103, 328, 387, 466, 528 |
| AgsI | TTSAA | 3 cut(s) | 155, 283, 433 |
| AjnI | CCWGG | 2 cut(s) | 171, 495 |
| AluBI | AGCT | 4 cut(s) | 208, 275, 355, 581 |
| AluI | AGCT | 4 cut(s) | 208, 275, 355, 581 |
| Alw26I | GTCTC | 2 cut(s) | 20, 697 |
| AoxI | GGCC | 8 cut(s) | 74, 94, 181, 297, 411, 489, 518, 699 |
| ApaI | GGGCCC | 1 cut(s) | 522 |
| ApeKI | GCWGC | 3 cut(s) | 325, 565, 590 |
| AspLEI | GCGC | 1 cut(s) | 718 |
| AspS9I | GGNCC | 5 cut(s) | 48, 75, 518, 519, 699 |
| AsuC2I | CCSGG | 1 cut(s) | 697 |
| AsuHPI | GGTGA | 2 cut(s) | 98, 153 |
| AvaII | GGWCC | 1 cut(s) | 48 |
| BaeGI | GKGCMC | 1 cut(s) | 522 |
| BalI | TGGCCA | 1 cut(s) | 183 |
| BanI | GGYRCC | 1 cut(s) | 482 |
| BanII | GRGCYC | 1 cut(s) | 522 |
| BbvI | GCAGC | 3 cut(s) | 337, 577, 577 |
| BccI | CCATC | 3 cut(s) | 192, 200, 650 |
| BceAI | ACGGC | 3 cut(s) | 272, 404, 504 |
| BciT130I | CCWGG | 2 cut(s) | 173, 497 |
| BclI | TGATCA | 1 cut(s) | 637 |
| BcnI | CCSGG | 1 cut(s) | 697 |
| BcoDI | GTCTC | 2 cut(s) | 20, 697 |
| BfaI | CTAG | 1 cut(s) | 125 |
| BfmI | CTRYAG | 3 cut(s) | 323, 348, 603 |
| Bme1390I | CCNGG | 3 cut(s) | 173, 497, 697 |
| Bme18I | GGWCC | 1 cut(s) | 48 |
| BmgT120I | GGNCC | 5 cut(s) | 48, 75, 518, 519, 699 |
| BmiI | GGNNCC | 4 cut(s) | 49, 484, 520, 700 |
| BmrFI | CCNGG | 3 cut(s) | 173, 497, 697 |
| BmrI | ACTGGG | 1 cut(s) | 538 |
| BmsI | GCATC | 2 cut(s) | 548, 601 |
| BmuI | ACTGGG | 1 cut(s) | 538 |
| BpmI | CTGGAG | 2 cut(s) | 281, 518 |
| BpuMI | CCSGG | 1 cut(s) | 697 |
| BsaAI | YACGTR | 1 cut(s) | 250 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BsaJI | CCNNGG | 6 cut(s) | 233, 300, 420, 441, 486, 696 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 83, 103, 328, 387, 466, 528 |
| Bse118I | RCCGGY | 1 cut(s) | 338 |
| Bse1I | ACTGG | 2 cut(s) | 533, 552 |
| BseBI | CCWGG | 2 cut(s) | 173, 497 |
| BseDI | CCNNGG | 6 cut(s) | 233, 300, 420, 441, 486, 696 |
| BseGI | GGATG | 2 cut(s) | 318, 658 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 83, 103, 328, 387, 466, 528 |
| BseMII | CTCAG | 1 cut(s) | 557 |
| BseNI | ACTGG | 2 cut(s) | 533, 552 |
| BseRI | GAGGAG | 1 cut(s) | 34 |
| BseSI | GKGCMC | 1 cut(s) | 522 |
| BseXI | GCAGC | 3 cut(s) | 337, 577, 577 |
| BsgI | GTGCAG | 1 cut(s) | 132 |
| Bsh1236I | CGCG | 2 cut(s) | 34, 443 |
| Bsh1285I | CGRYCG | 1 cut(s) | 147 |
| BshFI | GGCC | 8 cut(s) | 76, 96, 183, 299, 413, 491, 520, 701 |
| BshNI | GGYRCC | 1 cut(s) | 482 |
| BsiEI | CGRYCG | 1 cut(s) | 147 |
| BsiSI | CCGG | 3 cut(s) | 339, 647, 696 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 83, 103, 328, 387, 466, 528 |
| BsmAI | GTCTC | 2 cut(s) | 20, 697 |
| BsmBI | CGTCTC | 1 cut(s) | 20 |
| BsnI | GGCC | 8 cut(s) | 76, 96, 183, 299, 413, 491, 520, 701 |
| Bsp120I | GGGCCC | 1 cut(s) | 518 |
| Bsp1286I | GDGCHC | 1 cut(s) | 522 |
| Bsp143I | GATC | 2 cut(s) | 38, 637 |
| BspANI | GGCC | 8 cut(s) | 76, 96, 183, 299, 413, 491, 520, 701 |
| BspCNI | CTCAG | 1 cut(s) | 556 |
| BspFNI | CGCG | 2 cut(s) | 34, 443 |
| BspLI | GGNNCC | 4 cut(s) | 49, 484, 520, 700 |
| BspMAI | CTGCAG | 3 cut(s) | 327, 352, 607 |
| BspT107I | GGYRCC | 1 cut(s) | 482 |
| BsrBI | CCGCTC | 1 cut(s) | 618 |
| BsrFI | RCCGGY | 1 cut(s) | 338 |
| BsrI | ACTGG | 2 cut(s) | 533, 552 |
| BssAI | RCCGGY | 1 cut(s) | 338 |
| BssECI | CCNNGG | 6 cut(s) | 233, 300, 420, 441, 486, 696 |
| BssMI | GATC | 2 cut(s) | 38, 637 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| BssT1I | CCWWGG | 1 cut(s) | 300 |
| Bst2UI | CCWGG | 2 cut(s) | 173, 497 |
| Bst4CI | ACNGT | 2 cut(s) | 159, 644 |
| Bst6I | CTCTTC | 2 cut(s) | 11, 55 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 611 |
| BstBAI | YACGTR | 1 cut(s) | 250 |
| BstDEI | CTNAG | 3 cut(s) | 465, 543, 723 |
| BstDSI | CCRYGG | 3 cut(s) | 420, 441, 486 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 464 |
| BstF5I | GGATG | 2 cut(s) | 318, 658 |
| BstFNI | CGCG | 2 cut(s) | 34, 443 |
| BstHHI | GCGC | 1 cut(s) | 718 |
| BstKTI | GATC | 2 cut(s) | 41, 640 |
| BstMAI | GTCTC | 2 cut(s) | 20, 697 |
| BstMBI | GATC | 2 cut(s) | 38, 637 |
| BstMCI | CGRYCG | 1 cut(s) | 147 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 413, 517, 574, 587, 596, 611 |
| BstNI | CCWGG | 2 cut(s) | 173, 497 |
| BstNSI | RCATGY | 1 cut(s) | 407 |
| BstSCI | CCNGG | 3 cut(s) | 171, 495, 695 |
| BstSFI | CTRYAG | 3 cut(s) | 323, 348, 603 |
| BstSLI | GKGCMC | 1 cut(s) | 522 |
| BstUI | CGCG | 2 cut(s) | 34, 443 |
| BstV1I | GCAGC | 3 cut(s) | 337, 577, 577 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 709 |
| BsuRI | GGCC | 8 cut(s) | 76, 96, 183, 299, 413, 491, 520, 701 |
| BtgI | CCRYGG | 3 cut(s) | 420, 441, 486 |
| BtsCI | GGATG | 2 cut(s) | 318, 658 |
| BtsI | GCAGTG | 1 cut(s) | 631 |
| BtsIMutI | CAGTG | 2 cut(s) | 631, 640 |
| CfoI | GCGC | 1 cut(s) | 718 |
| Cfr10I | RCCGGY | 1 cut(s) | 338 |
| Cfr13I | GGNCC | 5 cut(s) | 48, 75, 518, 519, 699 |
| Cfr42I | CCGCGG | 1 cut(s) | 444 |
| CseI | GACGC | 2 cut(s) | 13, 40 |
| Csp6I | GTAC | 1 cut(s) | 555 |
| CviAII | CATG | 4 cut(s) | 203, 266, 404, 709 |
| CviQI | GTAC | 1 cut(s) | 555 |
| DdeI | CTNAG | 3 cut(s) | 465, 543, 723 |
| DpnI | GATC | 2 cut(s) | 40, 639 |
| DpnII | GATC | 2 cut(s) | 38, 637 |
| EaeI | YGGCCR | 4 cut(s) | 94, 181, 297, 489 |
| Eam1104I | CTCTTC | 2 cut(s) | 11, 55 |
| EarI | CTCTTC | 2 cut(s) | 11, 55 |
| EciI | GGCGGA | 4 cut(s) | 40, 253, 325, 665 |
| Eco130I | CCWWGG | 1 cut(s) | 300 |
| Eco24I | GRGCYC | 1 cut(s) | 522 |
| Eco47I | GGWCC | 1 cut(s) | 48 |
| Eco57I | CTGAAG | 3 cut(s) | 377, 527, 708 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 464 |
| EcoO109I | RGGNCCY | 1 cut(s) | 518 |
| EcoRII | CCWGG | 2 cut(s) | 171, 495 |
| EcoT14I | CCWWGG | 1 cut(s) | 300 |
| EcoT38I | GRGCYC | 1 cut(s) | 522 |
| ErhI | CCWWGG | 1 cut(s) | 300 |
| Esp3I | CGTCTC | 1 cut(s) | 20 |
| FaeI | CATG | 4 cut(s) | 206, 269, 407, 712 |
| FaiI | YATR | 8 cut(s) | 204, 267, 272, 405, 448, 450, 710, 720 |
| FatI | CATG | 4 cut(s) | 202, 265, 403, 708 |
| FauI | CCCGC | 3 cut(s) | 85, 321, 623 |
| FbaI | TGATCA | 1 cut(s) | 637 |
| FblI | GTMKAC | 1 cut(s) | 315 |
| FokI | GGATG | 2 cut(s) | 305, 665 |
| FriOI | GRGCYC | 1 cut(s) | 522 |
| FspBI | CTAG | 1 cut(s) | 125 |
| GlaI | GCGC | 1 cut(s) | 717 |
| GsuI | CTGGAG | 2 cut(s) | 281, 518 |
| HaeIII | GGCC | 8 cut(s) | 76, 96, 183, 299, 413, 491, 520, 701 |
| HapII | CCGG | 3 cut(s) | 339, 647, 696 |
| HgaI | GACGC | 2 cut(s) | 13, 40 |
| HhaI | GCGC | 1 cut(s) | 718 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| Hin1II | CATG | 4 cut(s) | 206, 269, 407, 712 |
| Hin6I | GCGC | 1 cut(s) | 716 |
| HinP1I | GCGC | 1 cut(s) | 716 |
| HincII | GTYRAC | 2 cut(s) | 316, 662 |
| HindII | GTYRAC | 2 cut(s) | 316, 662 |
| HinfI | GANTC | 4 cut(s) | 128, 332, 425, 667 |
| HpaII | CCGG | 3 cut(s) | 339, 647, 696 |
| HphI | GGTGA | 2 cut(s) | 98, 153 |
| Hpy166II | GTNNAC | 2 cut(s) | 316, 662 |
| Hpy188I | TCNGA | 1 cut(s) | 688 |
| Hpy188III | TCNNGA | 1 cut(s) | 125 |
| Hpy8I | GTNNAC | 2 cut(s) | 316, 662 |
| Hpy99I | CGWCG | 1 cut(s) | 34 |
| HpyAV | CCTTC | 4 cut(s) | 77, 304, 391, 439 |
| HpyCH4III | ACNGT | 2 cut(s) | 159, 644 |
| HpyCH4IV | ACGT | 2 cut(s) | 249, 557 |
| HpyCH4V | TGCA | 6 cut(s) | 113, 202, 325, 350, 407, 605 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 413, 517, 574, 587, 596, 611 |
| HpyF3I | CTNAG | 3 cut(s) | 465, 543, 723 |
| HpySE526I | ACGT | 2 cut(s) | 249, 557 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| Hsp92II | CATG | 4 cut(s) | 206, 269, 407, 712 |
| HspAI | GCGC | 1 cut(s) | 716 |
| KroI | GCCGGC | 1 cut(s) | 338 |
| KroNI | GCCGGC | 1 cut(s) | 340 |
| Ksp22I | TGATCA | 1 cut(s) | 637 |
| KspI | CCGCGG | 1 cut(s) | 444 |
| Kzo9I | GATC | 2 cut(s) | 38, 637 |
| LmnI | GCTCC | 2 cut(s) | 262, 604 |
| Lsp1109I | GCAGC | 3 cut(s) | 337, 577, 577 |
| LweI | GCATC | 2 cut(s) | 548, 601 |
| MaeI | CTAG | 1 cut(s) | 125 |
| MaeII | ACGT | 2 cut(s) | 249, 557 |
| MaeIII | GTNAC | 1 cut(s) | 159 |
| MalI | GATC | 2 cut(s) | 40, 639 |
| MbiI | CCGCTC | 1 cut(s) | 618 |
| MboI | GATC | 2 cut(s) | 38, 637 |
| MboII | GAAGA | 4 cut(s) | 25, 28, 72, 370 |
| MhlI | GDGCHC | 1 cut(s) | 522 |
| MlsI | TGGCCA | 1 cut(s) | 183 |
| MluCI | AATT | 1 cut(s) | 362 |
| MluNI | TGGCCA | 1 cut(s) | 183 |
| MlyI | GAGTC | 2 cut(s) | 341, 661 |
| Mox20I | TGGCCA | 1 cut(s) | 183 |
| MroNI | GCCGGC | 1 cut(s) | 338 |
| MscI | TGGCCA | 1 cut(s) | 183 |
| Msp20I | TGGCCA | 1 cut(s) | 183 |
| MspA1I | CMGCKG | 5 cut(s) | 99, 328, 443, 581, 673 |
| MspI | CCGG | 3 cut(s) | 339, 647, 696 |
| MspR9I | CCNGG | 3 cut(s) | 173, 497, 697 |
| MvaI | CCWGG | 2 cut(s) | 173, 497 |
| MvnI | CGCG | 2 cut(s) | 34, 443 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 413, 517, 574, 587, 596, 611 |
| NaeI | GCCGGC | 1 cut(s) | 340 |
| NciI | CCSGG | 1 cut(s) | 697 |
| NdeII | GATC | 2 cut(s) | 38, 637 |
| NgoMIV | GCCGGC | 1 cut(s) | 338 |
| NlaIII | CATG | 4 cut(s) | 206, 269, 407, 712 |
| NlaIV | GGNNCC | 4 cut(s) | 49, 484, 520, 700 |
| NmeAIII | GCCGAG | 1 cut(s) | 214 |
| NmuCI | GTSAC | 1 cut(s) | 159 |
| NspI | RCATGY | 1 cut(s) | 407 |
| PaeI | GCATGC | 1 cut(s) | 407 |
| PdiI | GCCGGC | 1 cut(s) | 340 |
| PfeI | GAWTC | 2 cut(s) | 128, 425 |
| PflFI | GACNNNGTC | 1 cut(s) | 530 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 528 |
| PleI | GAGTC | 2 cut(s) | 340, 661 |
| PpsI | GAGTC | 2 cut(s) | 340, 661 |
| Ppu21I | YACGTR | 1 cut(s) | 250 |
| Psp6I | CCWGG | 2 cut(s) | 171, 495 |
| PspGI | CCWGG | 2 cut(s) | 171, 495 |
| PspN4I | GGNNCC | 4 cut(s) | 49, 484, 520, 700 |
| PspOMI | GGGCCC | 1 cut(s) | 518 |
| PspPI | GGNCC | 5 cut(s) | 48, 75, 518, 519, 699 |
| PstI | CTGCAG | 3 cut(s) | 327, 352, 607 |
| PsyI | GACNNNGTC | 1 cut(s) | 530 |
| PvuII | CAGCTG | 1 cut(s) | 581 |
| RsaI | GTAC | 1 cut(s) | 556 |
| RsaNI | GTAC | 1 cut(s) | 555 |
| SacII | CCGCGG | 1 cut(s) | 444 |
| SalI | GTCGAC | 1 cut(s) | 314 |
| Sau3AI | GATC | 2 cut(s) | 38, 637 |
| Sau96I | GGNCC | 5 cut(s) | 48, 75, 518, 519, 699 |
| SbfI | CCTGCAGG | 1 cut(s) | 607 |
| SchI | GAGTC | 2 cut(s) | 341, 661 |
| ScrFI | CCNGG | 3 cut(s) | 173, 497, 697 |
| SdaI | CCTGCAGG | 1 cut(s) | 607 |
| SduI | GDGCHC | 1 cut(s) | 522 |
| SfaNI | GCATC | 2 cut(s) | 548, 601 |
| SfcI | CTRYAG | 3 cut(s) | 323, 348, 603 |
| Sfr303I | CCGCGG | 1 cut(s) | 444 |
| SgrBI | CCGCGG | 1 cut(s) | 444 |
| SinI | GGWCC | 1 cut(s) | 48 |
| SphI | GCATGC | 1 cut(s) | 407 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 607 |
| Sse9I | AATT | 1 cut(s) | 362 |
| SspMI | CTAG | 1 cut(s) | 125 |
| StyD4I | CCNGG | 3 cut(s) | 171, 495, 695 |
| StyI | CCWWGG | 1 cut(s) | 300 |
| TaaI | ACNGT | 2 cut(s) | 159, 644 |
| TaiI | ACGT | 2 cut(s) | 252, 560 |
| TaqI | TCGA | 2 cut(s) | 143, 315 |
| TasI | AATT | 1 cut(s) | 362 |
| TauI | GCSGC | 7 cut(s) | 99, 299, 416, 419, 446, 571, 716 |
| TfiI | GAWTC | 2 cut(s) | 128, 425 |
| TscAI | CASTG | 2 cut(s) | 631, 647 |
| TseFI | GTSAC | 1 cut(s) | 159 |
| TseI | GCWGC | 3 cut(s) | 325, 565, 590 |
| Tsp45I | GTSAC | 1 cut(s) | 159 |
| TspDTI | ATGAA | 2 cut(s) | 26, 697 |
| TspGWI | ACGGA | 1 cut(s) | 679 |
| TspRI | CASTG | 2 cut(s) | 631, 647 |
| Tth111I | GACNNNGTC | 1 cut(s) | 530 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 528 |
| VpaK11BI | GGWCC | 1 cut(s) | 48 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 464 |
| XbaI | TCTAGA | 1 cut(s) | 124 |
| XceI | RCATGY | 1 cut(s) | 407 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 493 |
| XmiI | GTMKAC | 1 cut(s) | 315 |
| XspI | CTAG | 1 cut(s) | 125 |