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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 881 |
| AccB1I | GGYRCC | 2 cut(s) | 881, 917 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 927 |
| AccBSI | CCGCTC | 3 cut(s) | 382, 484, 637 |
| AccI | GTMKAC | 1 cut(s) | 90 |
| AccII | CGCG | 2 cut(s) | 416, 600 |
| AclWI | GGATC | 2 cut(s) | 693, 712 |
| AcoI | YGGCCR | 2 cut(s) | 306, 615 |
| AcuI | CTGAAG | 5 cut(s) | 84, 179, 497, 701, 707 |
| AcyI | GRCGYC | 2 cut(s) | 562, 938 |
| AfaI | GTAC | 1 cut(s) | 883 |
| AfeI | AGCGCT | 1 cut(s) | 410 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 65, 161, 420, 475, 541, 571, 727, 865, 927 |
| AgsI | TTSAA | 2 cut(s) | 610, 832 |
| AjiI | CACGTC | 1 cut(s) | 553 |
| AjnI | CCWGG | 3 cut(s) | 453, 534, 894 |
| AluBI | AGCT | 6 cut(s) | 140, 490, 523, 674, 692, 754 |
| AluI | AGCT | 6 cut(s) | 140, 490, 523, 674, 692, 754 |
| AlwI | GGATC | 2 cut(s) | 693, 712 |
| Aor51HI | AGCGCT | 1 cut(s) | 410 |
| AoxI | GGCC | 5 cut(s) | 56, 152, 306, 615, 810 |
| ApeKI | GCWGC | 3 cut(s) | 137, 178, 487 |
| Asp718I | GGTACC | 1 cut(s) | 881 |
| AspLEI | GCGC | 2 cut(s) | 178, 411 |
| AspS9I | GGNCC | 4 cut(s) | 23, 56, 152, 898 |
| AsuC2I | CCSGG | 1 cut(s) | 330 |
| AsuHPI | GGTGA | 3 cut(s) | 8, 80, 310 |
| AvaII | GGWCC | 2 cut(s) | 23, 898 |
| BaeGI | GKGCMC | 1 cut(s) | 252 |
| BalI | TGGCCA | 1 cut(s) | 617 |
| BanI | GGYRCC | 2 cut(s) | 881, 917 |
| BanII | GRGCYC | 1 cut(s) | 262 |
| BbsI | GAAGAC | 3 cut(s) | 173, 503, 774 |
| BbvI | GCAGC | 3 cut(s) | 149, 190, 499 |
| BccI | CCATC | 3 cut(s) | 23, 626, 821 |
| BceAI | ACGGC | 4 cut(s) | 92, 170, 293, 803 |
| BciT130I | CCWGG | 3 cut(s) | 455, 536, 896 |
| BciVI | GTATCC | 1 cut(s) | 523 |
| BcnI | CCSGG | 1 cut(s) | 330 |
| BfaI | CTAG | 2 cut(s) | 590, 659 |
| BfoI | RGCGCY | 1 cut(s) | 412 |
| BfuI | GTATCC | 1 cut(s) | 523 |
| BisI | GCNGC | 9 cut(s) | 5, 138, 179, 351, 485, 488, 601, 738, 870 |
| BlpI | GCTNAGC | 1 cut(s) | 75 |
| BlsI | GCNGC | 9 cut(s) | 6, 139, 180, 352, 486, 489, 602, 739, 871 |
| Bme1390I | CCNGG | 4 cut(s) | 330, 455, 536, 896 |
| Bme18I | GGWCC | 2 cut(s) | 23, 898 |
| BmgBI | CACGTC | 1 cut(s) | 553 |
| BmgT120I | GGNCC | 4 cut(s) | 23, 56, 152, 898 |
| BmiI | GGNNCC | 7 cut(s) | 25, 153, 261, 425, 748, 883, 919 |
| BmrFI | CCNGG | 4 cut(s) | 330, 455, 536, 896 |
| BmsI | GCATC | 3 cut(s) | 61, 277, 634 |
| BpiI | GAAGAC | 3 cut(s) | 173, 503, 774 |
| Bpu10I | CCTNAGC | 2 cut(s) | 491, 540 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 75 |
| BpuMI | CCSGG | 1 cut(s) | 330 |
| Bsa29I | ATCGAT | 1 cut(s) | 621 |
| BsaHI | GRCGYC | 2 cut(s) | 562, 938 |
| BsaJI | CCNNGG | 7 cut(s) | 19, 473, 534, 570, 598, 819, 864 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 377, 407 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 65, 161, 420, 475, 541, 571, 727, 865, 927 |
| Bse118I | RCCGGY | 1 cut(s) | 779 |
| BseBI | CCWGG | 3 cut(s) | 455, 536, 896 |
| BseCI | ATCGAT | 1 cut(s) | 621 |
| BseDI | CCNNGG | 7 cut(s) | 19, 473, 534, 570, 598, 819, 864 |
| BseGI | GGATG | 2 cut(s) | 244, 292 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 65, 161, 420, 475, 541, 571, 727, 865, 927 |
| BseMII | CTCAG | 3 cut(s) | 66, 155, 390 |
| BseRI | GAGGAG | 4 cut(s) | 245, 248, 295, 512 |
| BseSI | GKGCMC | 1 cut(s) | 252 |
| BseXI | GCAGC | 3 cut(s) | 149, 190, 499 |
| BsgI | GTGCAG | 1 cut(s) | 425 |
| Bsh1236I | CGCG | 2 cut(s) | 416, 600 |
| Bsh1285I | CGRYCG | 1 cut(s) | 625 |
| BshFI | GGCC | 5 cut(s) | 58, 154, 308, 617, 812 |
| BshNI | GGYRCC | 2 cut(s) | 881, 917 |
| BshVI | ATCGAT | 1 cut(s) | 621 |
| BsiEI | CGRYCG | 1 cut(s) | 625 |
| BsiSI | CCGG | 2 cut(s) | 329, 780 |
| BslFI | GGGAC | 1 cut(s) | 9 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 65, 161, 420, 475, 541, 571, 727, 865, 927 |
| BsmFI | GGGAC | 1 cut(s) | 9 |
| BsnI | GGCC | 5 cut(s) | 58, 154, 308, 617, 812 |
| Bsp1286I | GDGCHC | 2 cut(s) | 252, 262 |
| Bsp143I | GATC | 3 cut(s) | 622, 685, 717 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 75 |
| BspANI | GGCC | 5 cut(s) | 58, 154, 308, 617, 812 |
| BspCNI | CTCAG | 3 cut(s) | 67, 154, 389 |
| BspDI | ATCGAT | 1 cut(s) | 621 |
| BspFNI | CGCG | 2 cut(s) | 416, 600 |
| BspLI | GGNNCC | 7 cut(s) | 25, 153, 261, 425, 748, 883, 919 |
| BspPI | GGATC | 2 cut(s) | 693, 712 |
| BspT107I | GGYRCC | 2 cut(s) | 881, 917 |
| BsrBI | CCGCTC | 3 cut(s) | 382, 484, 637 |
| BsrFI | RCCGGY | 1 cut(s) | 779 |
| BssAI | RCCGGY | 1 cut(s) | 779 |
| BssECI | CCNNGG | 7 cut(s) | 19, 473, 534, 570, 598, 819, 864 |
| BssMI | GATC | 3 cut(s) | 622, 685, 717 |
| BssNI | GRCGYC | 2 cut(s) | 562, 938 |
| BssT1I | CCWWGG | 3 cut(s) | 19, 473, 570 |
| Bst2UI | CCWGG | 3 cut(s) | 455, 536, 896 |
| Bst4CI | ACNGT | 5 cut(s) | 88, 95, 172, 247, 304 |
| BstACI | GRCGYC | 2 cut(s) | 562, 938 |
| BstC8I | GCNNGC | 8 cut(s) | 183, 335, 470, 525, 781, 785, 789, 855 |
| BstDEI | CTNAG | 5 cut(s) | 75, 141, 376, 491, 540 |
| BstDSI | CCRYGG | 2 cut(s) | 598, 819 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 63, 569, 863 |
| BstF5I | GGATG | 2 cut(s) | 244, 292 |
| BstFNI | CGCG | 2 cut(s) | 416, 600 |
| BstH2I | RGCGCY | 1 cut(s) | 412 |
| BstHHI | GCGC | 2 cut(s) | 178, 411 |
| BstKTI | GATC | 3 cut(s) | 625, 688, 720 |
| BstMBI | GATC | 3 cut(s) | 622, 685, 717 |
| BstMCI | CGRYCG | 1 cut(s) | 625 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 182, 356, 875 |
| BstNI | CCWGG | 3 cut(s) | 455, 536, 896 |
| BstSCI | CCNGG | 4 cut(s) | 328, 453, 534, 894 |
| BstSLI | GKGCMC | 1 cut(s) | 252 |
| BstUI | CGCG | 2 cut(s) | 416, 600 |
| BstV1I | GCAGC | 3 cut(s) | 149, 190, 499 |
| BstV2I | GAAGAC | 3 cut(s) | 173, 503, 774 |
| BstX2I | RGATCY | 1 cut(s) | 717 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 820 |
| BstYI | RGATCY | 1 cut(s) | 717 |
| Bsu15I | ATCGAT | 1 cut(s) | 621 |
| BsuI | GTATCC | 1 cut(s) | 523 |
| BsuRI | GGCC | 5 cut(s) | 58, 154, 308, 617, 812 |
| BsuTUI | ATCGAT | 1 cut(s) | 621 |
| BtgI | CCRYGG | 2 cut(s) | 598, 819 |
| BtgZI | GCGATG | 1 cut(s) | 799 |
| BtrI | CACGTC | 1 cut(s) | 553 |
| BtsCI | GGATG | 2 cut(s) | 244, 292 |
| BtsIMutI | CAGTG | 2 cut(s) | 149, 731 |
| Cac8I | GCNNGC | 8 cut(s) | 183, 335, 470, 525, 781, 785, 789, 855 |
| CfoI | GCGC | 2 cut(s) | 178, 411 |
| Cfr10I | RCCGGY | 1 cut(s) | 779 |
| Cfr13I | GGNCC | 4 cut(s) | 23, 56, 152, 898 |
| Cfr42I | CCGCGG | 1 cut(s) | 601 |
| ClaI | ATCGAT | 1 cut(s) | 621 |
| CseI | GACGC | 3 cut(s) | 570, 593, 927 |
| Csp6I | GTAC | 1 cut(s) | 882 |
| CviAII | CATG | 1 cut(s) | 629 |
| CviQI | GTAC | 1 cut(s) | 882 |
| DdeI | CTNAG | 5 cut(s) | 75, 141, 376, 491, 540 |
| DpnI | GATC | 3 cut(s) | 624, 687, 719 |
| DpnII | GATC | 3 cut(s) | 622, 685, 717 |
| EaeI | YGGCCR | 2 cut(s) | 306, 615 |
| EciI | GGCGGA | 5 cut(s) | 330, 473, 542, 590, 829 |
| Eco130I | CCWWGG | 3 cut(s) | 19, 473, 570 |
| Eco24I | GRGCYC | 1 cut(s) | 262 |
| Eco47I | GGWCC | 2 cut(s) | 23, 898 |
| Eco47III | AGCGCT | 1 cut(s) | 410 |
| Eco57I | CTGAAG | 5 cut(s) | 84, 179, 497, 701, 707 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 63, 569, 863 |
| EcoO109I | RGGNCCY | 2 cut(s) | 56, 152 |
| EcoRII | CCWGG | 3 cut(s) | 453, 534, 894 |
| EcoT14I | CCWWGG | 3 cut(s) | 19, 473, 570 |
| EcoT38I | GRGCYC | 1 cut(s) | 262 |
| ErhI | CCWWGG | 3 cut(s) | 19, 473, 570 |
| FaeI | CATG | 1 cut(s) | 632 |
| FaiI | YATR | 5 cut(s) | 254, 357, 630, 650, 923 |
| FaqI | GGGAC | 1 cut(s) | 9 |
| FatI | CATG | 1 cut(s) | 628 |
| FauI | CCCGC | 3 cut(s) | 141, 375, 605 |
| FblI | GTMKAC | 1 cut(s) | 90 |
| Fnu4HI | GCNGC | 9 cut(s) | 5, 138, 179, 351, 485, 488, 601, 738, 870 |
| FokI | GGATG | 2 cut(s) | 251, 299 |
| FriOI | GRGCYC | 1 cut(s) | 262 |
| Fsp4HI | GCNGC | 9 cut(s) | 5, 138, 179, 351, 485, 488, 601, 738, 870 |
| FspBI | CTAG | 2 cut(s) | 590, 659 |
| GlaI | GCGC | 2 cut(s) | 177, 410 |
| GluI | GCNGC | 9 cut(s) | 5, 138, 179, 351, 485, 488, 601, 738, 870 |
| HaeII | RGCGCY | 1 cut(s) | 412 |
| HaeIII | GGCC | 5 cut(s) | 58, 154, 308, 617, 812 |
| HapII | CCGG | 2 cut(s) | 329, 780 |
| HgaI | GACGC | 3 cut(s) | 570, 593, 927 |
| HhaI | GCGC | 2 cut(s) | 178, 411 |
| Hin1I | GRCGYC | 2 cut(s) | 562, 938 |
| Hin1II | CATG | 1 cut(s) | 632 |
| Hin6I | GCGC | 2 cut(s) | 176, 409 |
| HinP1I | GCGC | 2 cut(s) | 176, 409 |
| HincII | GTYRAC | 2 cut(s) | 91, 550 |
| HindII | GTYRAC | 2 cut(s) | 91, 550 |
| HinfI | GANTC | 5 cut(s) | 341, 374, 461, 731, 799 |
| HpaII | CCGG | 2 cut(s) | 329, 780 |
| HphI | GGTGA | 3 cut(s) | 8, 80, 310 |
| Hpy166II | GTNNAC | 2 cut(s) | 91, 550 |
| Hpy188I | TCNGA | 4 cut(s) | 159, 379, 437, 751 |
| Hpy188III | TCNNGA | 6 cut(s) | 26, 367, 421, 590, 654, 764 |
| Hpy8I | GTNNAC | 2 cut(s) | 91, 550 |
| Hpy99I | CGWCG | 5 cut(s) | 95, 314, 564, 829, 943 |
| HpyCH4III | ACNGT | 5 cut(s) | 88, 95, 172, 247, 304 |
| HpyCH4IV | ACGT | 2 cut(s) | 552, 827 |
| HpyCH4V | TGCA | 3 cut(s) | 137, 442, 787 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 182, 356, 875 |
| HpyF3I | CTNAG | 5 cut(s) | 75, 141, 376, 491, 540 |
| HpySE526I | ACGT | 2 cut(s) | 552, 827 |
| Hsp92I | GRCGYC | 2 cut(s) | 562, 938 |
| Hsp92II | CATG | 1 cut(s) | 632 |
| HspAI | GCGC | 2 cut(s) | 176, 409 |
| KpnI | GGTACC | 1 cut(s) | 885 |
| KroI | GCCGGC | 1 cut(s) | 779 |
| KroNI | GCCGGC | 1 cut(s) | 781 |
| KspI | CCGCGG | 1 cut(s) | 601 |
| Kzo9I | GATC | 3 cut(s) | 622, 685, 717 |
| LmnI | GCTCC | 4 cut(s) | 265, 416, 520, 556 |
| Lsp1109I | GCAGC | 3 cut(s) | 149, 190, 499 |
| LweI | GCATC | 3 cut(s) | 61, 277, 634 |
| MaeI | CTAG | 2 cut(s) | 590, 659 |
| MaeII | ACGT | 2 cut(s) | 552, 827 |
| MaeIII | GTNAC | 3 cut(s) | 187, 298, 581 |
| MalI | GATC | 3 cut(s) | 624, 687, 719 |
| MbiI | CCGCTC | 3 cut(s) | 382, 484, 637 |
| MboI | GATC | 3 cut(s) | 622, 685, 717 |
| MboII | GAAGA | 5 cut(s) | 139, 178, 283, 503, 779 |
| MflI | RGATCY | 1 cut(s) | 717 |
| MhlI | GDGCHC | 2 cut(s) | 252, 262 |
| MlsI | TGGCCA | 1 cut(s) | 617 |
| MluCI | AATT | 1 cut(s) | 605 |
| MluNI | TGGCCA | 1 cut(s) | 617 |
| MlyI | GAGTC | 3 cut(s) | 368, 470, 740 |
| MmeI | TCCRAC | 1 cut(s) | 415 |
| Mox20I | TGGCCA | 1 cut(s) | 617 |
| MroNI | GCCGGC | 1 cut(s) | 779 |
| MscI | TGGCCA | 1 cut(s) | 617 |
| MseI | TTAA | 2 cut(s) | 504, 933 |
| MslI | CAYNNNNRTG | 2 cut(s) | 402, 818 |
| Msp20I | TGGCCA | 1 cut(s) | 617 |
| MspA1I | CMGCKG | 1 cut(s) | 600 |
| MspI | CCGG | 2 cut(s) | 329, 780 |
| MspR9I | CCNGG | 4 cut(s) | 330, 455, 536, 896 |
| MvaI | CCWGG | 3 cut(s) | 455, 536, 896 |
| MvnI | CGCG | 2 cut(s) | 416, 600 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 182, 356, 875 |
| NaeI | GCCGGC | 1 cut(s) | 781 |
| NciI | CCSGG | 1 cut(s) | 330 |
| NdeII | GATC | 3 cut(s) | 622, 685, 717 |
| NgoMIV | GCCGGC | 1 cut(s) | 779 |
| NlaIII | CATG | 1 cut(s) | 632 |
| NlaIV | GGNNCC | 7 cut(s) | 25, 153, 261, 425, 748, 883, 919 |
| NmeAIII | GCCGAG | 1 cut(s) | 385 |
| NmuCI | GTSAC | 3 cut(s) | 187, 298, 581 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 441 |
| PdiI | GCCGGC | 1 cut(s) | 781 |
| PfeI | GAWTC | 2 cut(s) | 341, 799 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 927 |
| PkrI | GCNGC | 9 cut(s) | 6, 139, 180, 352, 486, 489, 602, 739, 871 |
| Ple19I | CGATCG | 1 cut(s) | 625 |
| PleI | GAGTC | 3 cut(s) | 368, 469, 739 |
| PpsI | GAGTC | 3 cut(s) | 368, 469, 739 |
| Psp6I | CCWGG | 3 cut(s) | 453, 534, 894 |
| PspGI | CCWGG | 3 cut(s) | 453, 534, 894 |
| PspN4I | GGNNCC | 7 cut(s) | 25, 153, 261, 425, 748, 883, 919 |
| PspPI | GGNCC | 4 cut(s) | 23, 56, 152, 898 |
| PsuI | RGATCY | 1 cut(s) | 717 |
| PvuI | CGATCG | 1 cut(s) | 625 |
| RsaI | GTAC | 1 cut(s) | 883 |
| RsaNI | GTAC | 1 cut(s) | 882 |
| RseI | CAYNNNNRTG | 2 cut(s) | 402, 818 |
| SacII | CCGCGG | 1 cut(s) | 601 |
| SalI | GTCGAC | 1 cut(s) | 89 |
| SaqAI | TTAA | 2 cut(s) | 504, 933 |
| SatI | GCNGC | 9 cut(s) | 5, 138, 179, 351, 485, 488, 601, 738, 870 |
| Sau3AI | GATC | 3 cut(s) | 622, 685, 717 |
| Sau96I | GGNCC | 4 cut(s) | 23, 56, 152, 898 |
| SchI | GAGTC | 3 cut(s) | 368, 470, 740 |
| ScrFI | CCNGG | 4 cut(s) | 330, 455, 536, 896 |
| SduI | GDGCHC | 2 cut(s) | 252, 262 |
| SfaNI | GCATC | 3 cut(s) | 61, 277, 634 |
| Sfr303I | CCGCGG | 1 cut(s) | 601 |
| SgrBI | CCGCGG | 1 cut(s) | 601 |
| SinI | GGWCC | 2 cut(s) | 23, 898 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 402, 818 |
| Sse9I | AATT | 1 cut(s) | 605 |
| SspMI | CTAG | 2 cut(s) | 590, 659 |
| StyD4I | CCNGG | 4 cut(s) | 328, 453, 534, 894 |
| StyI | CCWWGG | 3 cut(s) | 19, 473, 570 |
| TaaI | ACNGT | 5 cut(s) | 88, 95, 172, 247, 304 |
| TaiI | ACGT | 2 cut(s) | 555, 830 |
| TaqI | TCGA | 6 cut(s) | 90, 464, 480, 621, 655, 807 |
| TaqII | GACCGA | 2 cut(s) | 386, 878 |
| TasI | AATT | 1 cut(s) | 605 |
| TauI | GCSGC | 6 cut(s) | 7, 353, 487, 603, 740, 872 |
| TfiI | GAWTC | 2 cut(s) | 341, 799 |
| Tru1I | TTAA | 2 cut(s) | 504, 933 |
| Tru9I | TTAA | 2 cut(s) | 504, 933 |
| TscAI | CASTG | 2 cut(s) | 149, 731 |
| TseFI | GTSAC | 3 cut(s) | 187, 298, 581 |
| TseI | GCWGC | 3 cut(s) | 137, 178, 487 |
| Tsp45I | GTSAC | 3 cut(s) | 187, 298, 581 |
| TspDTI | ATGAA | 1 cut(s) | 386 |
| TspRI | CASTG | 2 cut(s) | 149, 731 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 927 |
| VpaK11BI | GGWCC | 2 cut(s) | 23, 898 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 63, 569, 863 |
| XbaI | TCTAGA | 1 cut(s) | 589 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 892 |
| XmiI | GTMKAC | 1 cut(s) | 90 |
| XspI | CTAG | 2 cut(s) | 590, 659 |