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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 319, 361, 737 |
| AccBSI | CCGCTC | 3 cut(s) | 522, 660, 735 |
| AccI | GTMKAC | 1 cut(s) | 209 |
| AccII | CGCG | 2 cut(s) | 116, 776 |
| AcsI | RAATTY | 1 cut(s) | 475 |
| AcyI | GRCGYC | 2 cut(s) | 320, 362 |
| AdeI | CACNNNGTG | 1 cut(s) | 757 |
| AfaI | GTAC | 2 cut(s) | 26, 84 |
| AfeI | AGCGCT | 1 cut(s) | 414 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 240, 496, 716, 747 |
| AjiI | CACGTC | 1 cut(s) | 812 |
| AjnI | CCWGG | 2 cut(s) | 326, 709 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 227, 259 |
| AluBI | AGCT | 6 cut(s) | 66, 587, 666, 699, 766, 783 |
| AluI | AGCT | 6 cut(s) | 66, 587, 666, 699, 766, 783 |
| Alw21I | GWGCWC | 1 cut(s) | 811 |
| Alw26I | GTCTC | 2 cut(s) | 691, 818 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 316 |
| Ama87I | CYCGRG | 1 cut(s) | 650 |
| Aor51HI | AGCGCT | 1 cut(s) | 414 |
| AoxI | GGCC | 3 cut(s) | 191, 282, 707 |
| ApeKI | GCWGC | 5 cut(s) | 400, 634, 645, 663, 763 |
| ApoI | RAATTY | 1 cut(s) | 475 |
| AspLEI | GCGC | 5 cut(s) | 228, 322, 364, 415, 557 |
| AspS9I | GGNCC | 3 cut(s) | 138, 192, 283 |
| AsuC2I | CCSGG | 4 cut(s) | 98, 651, 652, 670 |
| AsuII | TTCGAA | 1 cut(s) | 125 |
| AvaI | CYCGRG | 1 cut(s) | 650 |
| AvaII | GGWCC | 1 cut(s) | 138 |
| BaeGI | GKGCMC | 1 cut(s) | 602 |
| BanI | GGYRCC | 3 cut(s) | 319, 361, 737 |
| BanII | GRGCYC | 1 cut(s) | 16 |
| BauI | CACGAG | 1 cut(s) | 9 |
| Bbv12I | GWGCWC | 1 cut(s) | 811 |
| BbvI | GCAGC | 5 cut(s) | 412, 646, 657, 675, 775 |
| BccI | CCATC | 3 cut(s) | 400, 477, 518 |
| BceAI | ACGGC | 3 cut(s) | 56, 306, 778 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 442, 476 |
| BciT130I | CCWGG | 2 cut(s) | 328, 711 |
| BciVI | GTATCC | 1 cut(s) | 159 |
| BclI | TGATCA | 1 cut(s) | 570 |
| BcnI | CCSGG | 4 cut(s) | 98, 651, 652, 670 |
| BcoDI | GTCTC | 2 cut(s) | 691, 818 |
| BfaI | CTAG | 3 cut(s) | 187, 817, 822 |
| BfmI | CTRYAG | 1 cut(s) | 582 |
| BfoI | RGCGCY | 4 cut(s) | 229, 323, 365, 416 |
| BfuI | GTATCC | 1 cut(s) | 159 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 290 |
| BlpI | GCTNAGC | 3 cut(s) | 67, 229, 588 |
| Bme1390I | CCNGG | 6 cut(s) | 98, 328, 651, 652, 670, 711 |
| Bme18I | GGWCC | 1 cut(s) | 138 |
| BmeT110I | CYCGRG | 1 cut(s) | 650 |
| BmgBI | CACGTC | 1 cut(s) | 812 |
| BmgT120I | GGNCC | 3 cut(s) | 138, 192, 283 |
| BmiI | GGNNCC | 7 cut(s) | 245, 285, 321, 363, 375, 488, 739 |
| BmrFI | CCNGG | 6 cut(s) | 98, 328, 651, 652, 670, 711 |
| BmsI | GCATC | 3 cut(s) | 717, 750, 759 |
| BoxI | GACNNNNGTC | 1 cut(s) | 205 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 798 |
| BpmI | CTGGAG | 3 cut(s) | 416, 562, 673 |
| Bpu10I | CCTNAGC | 1 cut(s) | 491 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 67, 229, 588 |
| Bpu14I | TTCGAA | 1 cut(s) | 125 |
| BpuMI | CCSGG | 4 cut(s) | 98, 651, 652, 670 |
| BsaHI | GRCGYC | 2 cut(s) | 320, 362 |
| BsaI | GGTCTC | 1 cut(s) | 691 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 75, 105 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 240, 496, 716, 747 |
| Bse1I | ACTGG | 1 cut(s) | 321 |
| BseBI | CCWGG | 2 cut(s) | 328, 711 |
| BseGI | GGATG | 1 cut(s) | 732 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 240, 496, 716, 747 |
| BseMII | CTCAG | 4 cut(s) | 220, 230, 482, 602 |
| BseNI | ACTGG | 1 cut(s) | 321 |
| BseRI | GAGGAG | 1 cut(s) | 688 |
| BseSI | GKGCMC | 1 cut(s) | 602 |
| BseXI | GCAGC | 5 cut(s) | 412, 646, 657, 675, 775 |
| BseYI | CCCAGC | 1 cut(s) | 525 |
| BsgI | GTGCAG | 1 cut(s) | 325 |
| Bsh1236I | CGCG | 2 cut(s) | 116, 776 |
| BshFI | GGCC | 3 cut(s) | 193, 284, 709 |
| BshNI | GGYRCC | 3 cut(s) | 319, 361, 737 |
| BsiHKAI | GWGCWC | 1 cut(s) | 811 |
| BsiHKCI | CYCGRG | 1 cut(s) | 650 |
| BsiSI | CCGG | 3 cut(s) | 97, 651, 669 |
| BslFI | GGGAC | 1 cut(s) | 727 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 240, 496, 716, 747 |
| BsmAI | GTCTC | 2 cut(s) | 691, 818 |
| BsmBI | CGTCTC | 1 cut(s) | 818 |
| BsmFI | GGGAC | 1 cut(s) | 727 |
| BsnI | GGCC | 3 cut(s) | 193, 284, 709 |
| Bso31I | GGTCTC | 1 cut(s) | 691 |
| BsoBI | CYCGRG | 1 cut(s) | 650 |
| Bsp119I | TTCGAA | 1 cut(s) | 125 |
| Bsp1286I | GDGCHC | 3 cut(s) | 16, 602, 811 |
| Bsp1407I | TGTACA | 1 cut(s) | 82 |
| Bsp143I | GATC | 3 cut(s) | 149, 570, 677 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 67, 229, 588 |
| Bsp19I | CCATGG | 1 cut(s) | 134 |
| BspANI | GGCC | 3 cut(s) | 193, 284, 709 |
| BspCNI | CTCAG | 4 cut(s) | 221, 231, 483, 601 |
| BspFNI | CGCG | 2 cut(s) | 116, 776 |
| BspLI | GGNNCC | 7 cut(s) | 245, 285, 321, 363, 375, 488, 739 |
| BspT104I | TTCGAA | 1 cut(s) | 125 |
| BspT107I | GGYRCC | 3 cut(s) | 319, 361, 737 |
| BspTNI | GGTCTC | 1 cut(s) | 691 |
| BsrBI | CCGCTC | 3 cut(s) | 522, 660, 735 |
| BsrGI | TGTACA | 1 cut(s) | 82 |
| BsrI | ACTGG | 1 cut(s) | 321 |
| BssMI | GATC | 3 cut(s) | 149, 570, 677 |
| BssNI | GRCGYC | 2 cut(s) | 320, 362 |
| BssSI | CACGAG | 1 cut(s) | 9 |
| BssT1I | CCWWGG | 2 cut(s) | 16, 134 |
| Bst2BI | CACGAG | 1 cut(s) | 9 |
| Bst2UI | CCWGG | 2 cut(s) | 328, 711 |
| Bst4CI | ACNGT | 1 cut(s) | 142 |
| BstACI | GRCGYC | 2 cut(s) | 320, 362 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 769 |
| BstAUI | TGTACA | 1 cut(s) | 82 |
| BstBI | TTCGAA | 1 cut(s) | 125 |
| BstC8I | GCNNGC | 8 cut(s) | 111, 295, 308, 417, 538, 701, 774, 781 |
| BstDEI | CTNAG | 6 cut(s) | 46, 67, 229, 239, 491, 588 |
| BstDSI | CCRYGG | 4 cut(s) | 134, 248, 299, 774 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 494, 745 |
| BstF5I | GGATG | 1 cut(s) | 732 |
| BstFNI | CGCG | 2 cut(s) | 116, 776 |
| BstH2I | RGCGCY | 4 cut(s) | 229, 323, 365, 416 |
| BstHHI | GCGC | 5 cut(s) | 228, 322, 364, 415, 557 |
| BstKTI | GATC | 3 cut(s) | 152, 573, 680 |
| BstMAI | GTCTC | 2 cut(s) | 691, 818 |
| BstMBI | GATC | 3 cut(s) | 149, 570, 677 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 264, 290, 303, 343, 400, 425, 469, 769, 806 |
| BstNI | CCWGG | 2 cut(s) | 328, 711 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 205 |
| BstSCI | CCNGG | 6 cut(s) | 96, 326, 649, 650, 668, 709 |
| BstSFI | CTRYAG | 1 cut(s) | 582 |
| BstSLI | GKGCMC | 1 cut(s) | 602 |
| BstUI | CGCG | 2 cut(s) | 116, 776 |
| BstV1I | GCAGC | 5 cut(s) | 412, 646, 657, 675, 775 |
| BsuI | GTATCC | 1 cut(s) | 159 |
| BsuRI | GGCC | 3 cut(s) | 193, 284, 709 |
| BtgI | CCRYGG | 4 cut(s) | 134, 248, 299, 774 |
| BtrI | CACGTC | 1 cut(s) | 812 |
| BtsCI | GGATG | 1 cut(s) | 732 |
| Cac8I | GCNNGC | 8 cut(s) | 111, 295, 308, 417, 538, 701, 774, 781 |
| CaiI | CAGNNNCTG | 1 cut(s) | 316 |
| CfoI | GCGC | 5 cut(s) | 228, 322, 364, 415, 557 |
| Cfr13I | GGNCC | 3 cut(s) | 138, 192, 283 |
| Cfr42I | CCGCGG | 1 cut(s) | 777 |
| Cfr9I | CCCGGG | 1 cut(s) | 650 |
| Csp6I | GTAC | 2 cut(s) | 25, 83 |
| CviAII | CATG | 3 cut(s) | 135, 171, 619 |
| CviQI | GTAC | 2 cut(s) | 25, 83 |
| DdeI | CTNAG | 6 cut(s) | 46, 67, 229, 239, 491, 588 |
| DinI | GGCGCC | 2 cut(s) | 321, 363 |
| DpnI | GATC | 3 cut(s) | 151, 572, 679 |
| DpnII | GATC | 3 cut(s) | 149, 570, 677 |
| DraIII | CACNNNGTG | 1 cut(s) | 757 |
| EciI | GGCGGA | 3 cut(s) | 83, 718, 739 |
| Eco130I | CCWWGG | 2 cut(s) | 16, 134 |
| Eco24I | GRGCYC | 1 cut(s) | 16 |
| Eco31I | GGTCTC | 1 cut(s) | 691 |
| Eco47I | GGWCC | 1 cut(s) | 138 |
| Eco47III | AGCGCT | 1 cut(s) | 414 |
| Eco88I | CYCGRG | 1 cut(s) | 650 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 494, 745 |
| EcoRI | GAATTC | 1 cut(s) | 475 |
| EcoRII | CCWGG | 2 cut(s) | 326, 709 |
| EcoT14I | CCWWGG | 2 cut(s) | 16, 134 |
| EcoT38I | GRGCYC | 1 cut(s) | 16 |
| EgeI | GGCGCC | 2 cut(s) | 321, 363 |
| EheI | GGCGCC | 2 cut(s) | 321, 363 |
| ErhI | CCWWGG | 2 cut(s) | 16, 134 |
| Esp3I | CGTCTC | 1 cut(s) | 818 |
| FaeI | CATG | 3 cut(s) | 138, 174, 622 |
| FaqI | GGGAC | 1 cut(s) | 727 |
| FatI | CATG | 3 cut(s) | 134, 170, 618 |
| FauI | CCCGC | 2 cut(s) | 529, 781 |
| FauNDI | CATATG | 1 cut(s) | 468 |
| FbaI | TGATCA | 1 cut(s) | 570 |
| FblI | GTMKAC | 1 cut(s) | 209 |
| FokI | GGATG | 1 cut(s) | 739 |
| FriOI | GRGCYC | 1 cut(s) | 16 |
| FspBI | CTAG | 3 cut(s) | 187, 817, 822 |
| GlaI | GCGC | 5 cut(s) | 227, 321, 363, 414, 556 |
| GsaI | CCCAGC | 1 cut(s) | 529 |
| GsuI | CTGGAG | 3 cut(s) | 416, 562, 673 |
| HaeII | RGCGCY | 4 cut(s) | 229, 323, 365, 416 |
| HaeIII | GGCC | 3 cut(s) | 193, 284, 709 |
| HapII | CCGG | 3 cut(s) | 97, 651, 669 |
| HhaI | GCGC | 5 cut(s) | 228, 322, 364, 415, 557 |
| Hin1I | GRCGYC | 2 cut(s) | 320, 362 |
| Hin1II | CATG | 3 cut(s) | 138, 174, 622 |
| Hin6I | GCGC | 5 cut(s) | 226, 320, 362, 413, 555 |
| HinP1I | GCGC | 5 cut(s) | 226, 320, 362, 413, 555 |
| HincII | GTYRAC | 2 cut(s) | 6, 210 |
| HindII | GTYRAC | 2 cut(s) | 6, 210 |
| HinfI | GANTC | 4 cut(s) | 88, 178, 454, 548 |
| HpaII | CCGG | 3 cut(s) | 97, 651, 669 |
| Hpy166II | GTNNAC | 2 cut(s) | 6, 210 |
| Hpy188I | TCNGA | 1 cut(s) | 240 |
| Hpy188III | TCNNGA | 3 cut(s) | 147, 480, 690 |
| Hpy8I | GTNNAC | 2 cut(s) | 6, 210 |
| Hpy99I | CGWCG | 3 cut(s) | 211, 292, 444 |
| HpyAV | CCTTC | 4 cut(s) | 38, 343, 603, 741 |
| HpyCH4III | ACNGT | 1 cut(s) | 142 |
| HpyCH4IV | ACGT | 1 cut(s) | 811 |
| HpyCH4V | TGCA | 3 cut(s) | 306, 730, 763 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 264, 290, 303, 343, 400, 425, 469, 769, 806 |
| HpyF3I | CTNAG | 6 cut(s) | 46, 67, 229, 239, 491, 588 |
| HpySE526I | ACGT | 1 cut(s) | 811 |
| Hsp92I | GRCGYC | 2 cut(s) | 320, 362 |
| Hsp92II | CATG | 3 cut(s) | 138, 174, 622 |
| HspAI | GCGC | 5 cut(s) | 226, 320, 362, 413, 555 |
| KasI | GGCGCC | 2 cut(s) | 319, 361 |
| Ksp22I | TGATCA | 1 cut(s) | 570 |
| KspI | CCGCGG | 1 cut(s) | 777 |
| Kzo9I | GATC | 3 cut(s) | 149, 570, 677 |
| LmnI | GCTCC | 7 cut(s) | 373, 397, 410, 486, 657, 671, 696 |
| Lsp1109I | GCAGC | 5 cut(s) | 412, 646, 657, 675, 775 |
| LweI | GCATC | 3 cut(s) | 717, 750, 759 |
| MaeI | CTAG | 3 cut(s) | 187, 817, 822 |
| MaeII | ACGT | 1 cut(s) | 811 |
| MaeIII | GTNAC | 2 cut(s) | 100, 433 |
| MalI | GATC | 3 cut(s) | 151, 572, 679 |
| MbiI | CCGCTC | 3 cut(s) | 522, 660, 735 |
| MboI | GATC | 3 cut(s) | 149, 570, 677 |
| MboII | GAAGA | 1 cut(s) | 498 |
| MhlI | GDGCHC | 3 cut(s) | 16, 602, 811 |
| MluCI | AATT | 1 cut(s) | 475 |
| Mly113I | GGCGCC | 2 cut(s) | 320, 362 |
| MlyI | GAGTC | 3 cut(s) | 82, 172, 448 |
| MslI | CAYNNNNRTG | 1 cut(s) | 515 |
| MspA1I | CMGCKG | 3 cut(s) | 428, 766, 776 |
| MspI | CCGG | 3 cut(s) | 97, 651, 669 |
| MspR9I | CCNGG | 6 cut(s) | 98, 328, 651, 652, 670, 711 |
| MvaI | CCWGG | 2 cut(s) | 328, 711 |
| MvnI | CGCG | 2 cut(s) | 116, 776 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 264, 290, 303, 343, 400, 425, 469, 769, 806 |
| NarI | GGCGCC | 2 cut(s) | 320, 362 |
| NciI | CCSGG | 4 cut(s) | 98, 651, 652, 670 |
| NcoI | CCATGG | 1 cut(s) | 134 |
| NdeI | CATATG | 1 cut(s) | 468 |
| NdeII | GATC | 3 cut(s) | 149, 570, 677 |
| NlaIII | CATG | 3 cut(s) | 138, 174, 622 |
| NlaIV | GGNNCC | 7 cut(s) | 245, 285, 321, 363, 375, 488, 739 |
| NmeAIII | GCCGAG | 1 cut(s) | 260 |
| NmuCI | GTSAC | 1 cut(s) | 433 |
| NspV | TTCGAA | 1 cut(s) | 125 |
| PasI | CCCWGGG | 1 cut(s) | 327 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 296 |
| PfeI | GAWTC | 1 cut(s) | 548 |
| PflFI | GACNNNGTC | 1 cut(s) | 142 |
| PfoI | TCCNGGA | 1 cut(s) | 668 |
| PleI | GAGTC | 3 cut(s) | 82, 172, 448 |
| PluTI | GGCGCC | 2 cut(s) | 323, 365 |
| PpsI | GAGTC | 3 cut(s) | 82, 172, 448 |
| PshAI | GACNNNNGTC | 1 cut(s) | 205 |
| Psp6I | CCWGG | 2 cut(s) | 326, 709 |
| PspFI | CCCAGC | 1 cut(s) | 525 |
| PspGI | CCWGG | 2 cut(s) | 326, 709 |
| PspN4I | GGNNCC | 7 cut(s) | 245, 285, 321, 363, 375, 488, 739 |
| PspPI | GGNCC | 3 cut(s) | 138, 192, 283 |
| PstNI | CAGNNNCTG | 1 cut(s) | 316 |
| PsyI | GACNNNGTC | 1 cut(s) | 142 |
| PvuII | CAGCTG | 1 cut(s) | 766 |
| RsaI | GTAC | 2 cut(s) | 26, 84 |
| RsaNI | GTAC | 2 cut(s) | 25, 83 |
| RseI | CAYNNNNRTG | 1 cut(s) | 515 |
| SacII | CCGCGG | 1 cut(s) | 777 |
| SalI | GTCGAC | 1 cut(s) | 208 |
| Sau3AI | GATC | 3 cut(s) | 149, 570, 677 |
| Sau96I | GGNCC | 3 cut(s) | 138, 192, 283 |
| SchI | GAGTC | 3 cut(s) | 82, 172, 448 |
| ScrFI | CCNGG | 6 cut(s) | 98, 328, 651, 652, 670, 711 |
| SduI | GDGCHC | 3 cut(s) | 16, 602, 811 |
| SfaNI | GCATC | 3 cut(s) | 717, 750, 759 |
| SfcI | CTRYAG | 1 cut(s) | 582 |
| SfoI | GGCGCC | 2 cut(s) | 321, 363 |
| Sfr303I | CCGCGG | 1 cut(s) | 777 |
| SfuI | TTCGAA | 1 cut(s) | 125 |
| SgrBI | CCGCGG | 1 cut(s) | 777 |
| SinI | GGWCC | 1 cut(s) | 138 |
| SmaI | CCCGGG | 1 cut(s) | 652 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 515 |
| Sse9I | AATT | 1 cut(s) | 475 |
| SspDI | GGCGCC | 2 cut(s) | 319, 361 |
| SspMI | CTAG | 3 cut(s) | 187, 817, 822 |
| StyD4I | CCNGG | 6 cut(s) | 96, 326, 649, 650, 668, 709 |
| StyI | CCWWGG | 2 cut(s) | 16, 134 |
| TaaI | ACNGT | 1 cut(s) | 142 |
| TaiI | ACGT | 1 cut(s) | 814 |
| TaqI | TCGA | 6 cut(s) | 52, 125, 146, 209, 452, 680 |
| TasI | AATT | 1 cut(s) | 475 |
| TatI | WGTACW | 1 cut(s) | 82 |
| TauI | GCSGC | 7 cut(s) | 116, 325, 428, 466, 525, 663, 779 |
| TfiI | GAWTC | 1 cut(s) | 548 |
| TseFI | GTSAC | 1 cut(s) | 433 |
| TseI | GCWGC | 5 cut(s) | 400, 634, 645, 663, 763 |
| Tsp45I | GTSAC | 1 cut(s) | 433 |
| TspMI | CCCGGG | 1 cut(s) | 650 |
| Tth111I | GACNNNGTC | 1 cut(s) | 142 |
| VpaK11BI | GGWCC | 1 cut(s) | 138 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 494, 745 |
| XapI | RAATTY | 1 cut(s) | 475 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 717 |
| XmaI | CCCGGG | 1 cut(s) | 650 |
| XmiI | GTMKAC | 1 cut(s) | 209 |
| XspI | CTAG | 3 cut(s) | 187, 817, 822 |