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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 557 |
| AccBSI | CCGCTC | 2 cut(s) | 313, 477 |
| AccII | CGCG | 1 cut(s) | 276 |
| AciI | CCGC | 5 cut(s) | 313, 371, 414, 477, 489 |
| AcoI | YGGCCR | 3 cut(s) | 162, 243, 372 |
| AcsI | RAATTY | 1 cut(s) | 187 |
| AcuI | CTGAAG | 1 cut(s) | 305 |
| AcyI | GRCGYC | 1 cut(s) | 501 |
| AfaI | GTAC | 1 cut(s) | 524 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 220, 463 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 119 |
| AjnI | CCWGG | 2 cut(s) | 82, 194 |
| AluBI | AGCT | 8 cut(s) | 152, 241, 283, 355, 452, 460, 533, 577 |
| AluI | AGCT | 8 cut(s) | 152, 241, 283, 355, 452, 460, 533, 577 |
| Alw26I | GTCTC | 2 cut(s) | 20, 31 |
| Ama87I | CYCGRG | 1 cut(s) | 214 |
| AoxI | GGCC | 5 cut(s) | 155, 162, 243, 372, 486 |
| ApeKI | GCWGC | 7 cut(s) | 132, 135, 199, 210, 238, 452, 518 |
| ApoI | RAATTY | 1 cut(s) | 187 |
| AspS9I | GGNCC | 1 cut(s) | 113 |
| AsuHPI | GGTGA | 1 cut(s) | 134 |
| AvaI | CYCGRG | 1 cut(s) | 214 |
| AvaII | GGWCC | 1 cut(s) | 113 |
| BalI | TGGCCA | 2 cut(s) | 164, 245 |
| BanI | GGYRCC | 1 cut(s) | 557 |
| BanII | GRGCYC | 1 cut(s) | 51 |
| BbvCI | CCTCAGC | 1 cut(s) | 483 |
| BbvI | GCAGC | 7 cut(s) | 119, 147, 186, 222, 250, 439, 530 |
| BccI | CCATC | 6 cut(s) | 49, 59, 103, 181, 302, 532 |
| BceAI | ACGGC | 1 cut(s) | 545 |
| BciT130I | CCWGG | 2 cut(s) | 84, 196 |
| BclI | TGATCA | 1 cut(s) | 319 |
| BcoDI | GTCTC | 2 cut(s) | 20, 31 |
| BfaI | CTAG | 1 cut(s) | 68 |
| BfmI | CTRYAG | 3 cut(s) | 133, 398, 516 |
| Bme1390I | CCNGG | 2 cut(s) | 84, 196 |
| Bme18I | GGWCC | 1 cut(s) | 113 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 119 |
| BmeT110I | CYCGRG | 1 cut(s) | 214 |
| BmgT120I | GGNCC | 1 cut(s) | 113 |
| BmiI | GGNNCC | 4 cut(s) | 48, 77, 114, 559 |
| BmrFI | CCNGG | 2 cut(s) | 84, 196 |
| BmsI | GCATC | 3 cut(s) | 250, 259, 532 |
| BpmI | CTGGAG | 1 cut(s) | 482 |
| Bpu10I | CCTNAGC | 1 cut(s) | 483 |
| BpuEI | CTTGAG | 1 cut(s) | 329 |
| BsaBI | GATNNNNATC | 1 cut(s) | 293 |
| BsaHI | GRCGYC | 1 cut(s) | 501 |
| BsaI | GGTCTC | 1 cut(s) | 31 |
| BsaJI | CCNNGG | 5 cut(s) | 82, 215, 246, 264, 375 |
| BsaWI | WCCGGW | 1 cut(s) | 330 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 220, 463 |
| Bse1I | ACTGG | 1 cut(s) | 110 |
| Bse8I | GATNNNNATC | 1 cut(s) | 293 |
| BseBI | CCWGG | 2 cut(s) | 84, 196 |
| BseDI | CCNNGG | 5 cut(s) | 82, 215, 246, 264, 375 |
| BseGI | GGATG | 3 cut(s) | 114, 274, 547 |
| BseJI | GATNNNNATC | 1 cut(s) | 293 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 220, 463 |
| BseMII | CTCAG | 2 cut(s) | 26, 474 |
| BseNI | ACTGG | 1 cut(s) | 110 |
| BseRI | GAGGAG | 2 cut(s) | 68, 487 |
| BseXI | GCAGC | 7 cut(s) | 119, 147, 186, 222, 250, 439, 530 |
| BseYI | CCCAGC | 1 cut(s) | 456 |
| Bsh1236I | CGCG | 1 cut(s) | 276 |
| BshFI | GGCC | 5 cut(s) | 157, 164, 245, 374, 488 |
| BshNI | GGYRCC | 1 cut(s) | 557 |
| BsiHKCI | CYCGRG | 1 cut(s) | 214 |
| BsiSI | CCGG | 1 cut(s) | 331 |
| BslFI | GGGAC | 1 cut(s) | 126 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 220, 463 |
| BsmAI | GTCTC | 2 cut(s) | 20, 31 |
| BsmBI | CGTCTC | 1 cut(s) | 20 |
| BsmFI | GGGAC | 1 cut(s) | 126 |
| BsmI | GAATGC | 1 cut(s) | 260 |
| BsnI | GGCC | 5 cut(s) | 157, 164, 245, 374, 488 |
| Bso31I | GGTCTC | 1 cut(s) | 31 |
| BsoBI | CYCGRG | 1 cut(s) | 214 |
| Bsp1286I | GDGCHC | 1 cut(s) | 51 |
| Bsp143I | GATC | 1 cut(s) | 319 |
| Bsp68I | TCGCGA | 1 cut(s) | 276 |
| BspACI | CCGC | 5 cut(s) | 313, 371, 414, 477, 489 |
| BspANI | GGCC | 5 cut(s) | 157, 164, 245, 374, 488 |
| BspCNI | CTCAG | 2 cut(s) | 27, 475 |
| BspFNI | CGCG | 1 cut(s) | 276 |
| BspLI | GGNNCC | 4 cut(s) | 48, 77, 114, 559 |
| BspMAI | CTGCAG | 3 cut(s) | 137, 402, 520 |
| BspT107I | GGYRCC | 1 cut(s) | 557 |
| BspTNI | GGTCTC | 1 cut(s) | 31 |
| BsrBI | CCGCTC | 2 cut(s) | 313, 477 |
| BsrI | ACTGG | 1 cut(s) | 110 |
| BssECI | CCNNGG | 5 cut(s) | 82, 215, 246, 264, 375 |
| BssMI | GATC | 1 cut(s) | 319 |
| BssNI | GRCGYC | 1 cut(s) | 501 |
| BssT1I | CCWWGG | 2 cut(s) | 246, 375 |
| Bst2UI | CCWGG | 2 cut(s) | 84, 196 |
| Bst4CI | ACNGT | 4 cut(s) | 117, 129, 146, 496 |
| Bst6I | CTCTTC | 1 cut(s) | 55 |
| BstACI | GRCGYC | 1 cut(s) | 501 |
| BstC8I | GCNNGC | 3 cut(s) | 243, 274, 531 |
| BstDEI | CTNAG | 2 cut(s) | 35, 483 |
| BstF5I | GGATG | 3 cut(s) | 114, 274, 547 |
| BstFNI | CGCG | 1 cut(s) | 276 |
| BstKTI | GATC | 1 cut(s) | 322 |
| BstMAI | GTCTC | 2 cut(s) | 20, 31 |
| BstMBI | GATC | 1 cut(s) | 319 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 73, 269, 361, 488 |
| BstNI | CCWGG | 2 cut(s) | 84, 196 |
| BstSCI | CCNGG | 2 cut(s) | 82, 194 |
| BstSFI | CTRYAG | 3 cut(s) | 133, 398, 516 |
| BstUI | CGCG | 1 cut(s) | 276 |
| BstV1I | GCAGC | 7 cut(s) | 119, 147, 186, 222, 250, 439, 530 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 90 |
| BsuRI | GGCC | 5 cut(s) | 157, 164, 245, 374, 488 |
| BtgZI | GCGATG | 1 cut(s) | 273 |
| BtsCI | GGATG | 3 cut(s) | 114, 274, 547 |
| BtsIMutI | CAGTG | 1 cut(s) | 134 |
| BtuMI | TCGCGA | 1 cut(s) | 276 |
| Cac8I | GCNNGC | 3 cut(s) | 243, 274, 531 |
| Cfr13I | GGNCC | 1 cut(s) | 113 |
| CseI | GACGC | 2 cut(s) | 40, 509 |
| Csp6I | GTAC | 1 cut(s) | 523 |
| CviAII | CATG | 1 cut(s) | 184 |
| CviQI | GTAC | 1 cut(s) | 523 |
| DdeI | CTNAG | 2 cut(s) | 35, 483 |
| DpnI | GATC | 1 cut(s) | 321 |
| DpnII | GATC | 1 cut(s) | 319 |
| DriI | GACNNNNNGTC | 1 cut(s) | 119 |
| EaeI | YGGCCR | 3 cut(s) | 162, 243, 372 |
| Eam1104I | CTCTTC | 1 cut(s) | 55 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 119 |
| EarI | CTCTTC | 1 cut(s) | 55 |
| Eco130I | CCWWGG | 2 cut(s) | 246, 375 |
| Eco24I | GRGCYC | 1 cut(s) | 51 |
| Eco31I | GGTCTC | 1 cut(s) | 31 |
| Eco47I | GGWCC | 1 cut(s) | 113 |
| Eco57I | CTGAAG | 1 cut(s) | 305 |
| Eco88I | CYCGRG | 1 cut(s) | 214 |
| EcoRI | GAATTC | 1 cut(s) | 187 |
| EcoRII | CCWGG | 2 cut(s) | 82, 194 |
| EcoT14I | CCWWGG | 2 cut(s) | 246, 375 |
| EcoT38I | GRGCYC | 1 cut(s) | 51 |
| ErhI | CCWWGG | 2 cut(s) | 246, 375 |
| Esp3I | CGTCTC | 1 cut(s) | 20 |
| FaeI | CATG | 1 cut(s) | 187 |
| FaiI | YATR | 4 cut(s) | 185, 347, 366, 368 |
| FaqI | GGGAC | 1 cut(s) | 126 |
| FatI | CATG | 1 cut(s) | 183 |
| FauNDI | CATATG | 1 cut(s) | 366 |
| FbaI | TGATCA | 1 cut(s) | 319 |
| FokI | GGATG | 3 cut(s) | 121, 281, 554 |
| FriOI | GRGCYC | 1 cut(s) | 51 |
| FspBI | CTAG | 1 cut(s) | 68 |
| GsaI | CCCAGC | 1 cut(s) | 460 |
| GsuI | CTGGAG | 1 cut(s) | 482 |
| HaeIII | GGCC | 5 cut(s) | 157, 164, 245, 374, 488 |
| HapII | CCGG | 1 cut(s) | 331 |
| HgaI | GACGC | 2 cut(s) | 40, 509 |
| Hin1I | GRCGYC | 1 cut(s) | 501 |
| Hin1II | CATG | 1 cut(s) | 187 |
| HindIII | AAGCTT | 1 cut(s) | 531 |
| HinfI | GANTC | 4 cut(s) | 4, 95, 334, 407 |
| HpaII | CCGG | 1 cut(s) | 331 |
| HphI | GGTGA | 1 cut(s) | 134 |
| Hpy166II | GTNNAC | 1 cut(s) | 499 |
| Hpy188I | TCNGA | 3 cut(s) | 46, 268, 582 |
| Hpy188III | TCNNGA | 1 cut(s) | 275 |
| Hpy8I | GTNNAC | 1 cut(s) | 499 |
| Hpy99I | CGWCG | 2 cut(s) | 34, 428 |
| HpyAV | CCTTC | 1 cut(s) | 16 |
| HpyCH4III | ACNGT | 4 cut(s) | 117, 129, 146, 496 |
| HpyCH4IV | ACGT | 1 cut(s) | 570 |
| HpyCH4V | TGCA | 6 cut(s) | 135, 183, 400, 518, 545, 566 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 73, 269, 361, 488 |
| HpyF3I | CTNAG | 2 cut(s) | 35, 483 |
| HpySE526I | ACGT | 1 cut(s) | 570 |
| Hsp92I | GRCGYC | 1 cut(s) | 501 |
| Hsp92II | CATG | 1 cut(s) | 187 |
| Ksp22I | TGATCA | 1 cut(s) | 319 |
| Kzo9I | GATC | 1 cut(s) | 319 |
| LmnI | GCTCC | 4 cut(s) | 46, 81, 474, 574 |
| Lsp1109I | GCAGC | 7 cut(s) | 119, 147, 186, 222, 250, 439, 530 |
| LweI | GCATC | 3 cut(s) | 250, 259, 532 |
| MaeI | CTAG | 1 cut(s) | 68 |
| MaeII | ACGT | 1 cut(s) | 570 |
| MaeIII | GTNAC | 1 cut(s) | 140 |
| MalI | GATC | 1 cut(s) | 321 |
| MbiI | CCGCTC | 2 cut(s) | 313, 477 |
| MboI | GATC | 1 cut(s) | 319 |
| MboII | GAAGA | 4 cut(s) | 25, 72, 183, 298 |
| MhlI | GDGCHC | 1 cut(s) | 51 |
| MlsI | TGGCCA | 2 cut(s) | 164, 245 |
| MluCI | AATT | 1 cut(s) | 187 |
| MluNI | TGGCCA | 2 cut(s) | 164, 245 |
| MmeI | TCCRAC | 1 cut(s) | 148 |
| Mox20I | TGGCCA | 2 cut(s) | 164, 245 |
| MscI | TGGCCA | 2 cut(s) | 164, 245 |
| MseI | TTAA | 2 cut(s) | 381, 507 |
| Msp20I | TGGCCA | 2 cut(s) | 164, 245 |
| MspA1I | CMGCKG | 2 cut(s) | 241, 460 |
| MspI | CCGG | 1 cut(s) | 331 |
| MspR9I | CCNGG | 2 cut(s) | 84, 196 |
| Mva1269I | GAATGC | 1 cut(s) | 260 |
| MvaI | CCWGG | 2 cut(s) | 84, 196 |
| MvnI | CGCG | 1 cut(s) | 276 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 73, 269, 361, 488 |
| NdeI | CATATG | 1 cut(s) | 366 |
| NdeII | GATC | 1 cut(s) | 319 |
| NlaIII | CATG | 1 cut(s) | 187 |
| NlaIV | GGNNCC | 4 cut(s) | 48, 77, 114, 559 |
| NmuCI | GTSAC | 1 cut(s) | 140 |
| NruI | TCGCGA | 1 cut(s) | 276 |
| PctI | GAATGC | 1 cut(s) | 260 |
| PfeI | GAWTC | 3 cut(s) | 95, 334, 407 |
| Psp6I | CCWGG | 2 cut(s) | 82, 194 |
| PspFI | CCCAGC | 1 cut(s) | 456 |
| PspGI | CCWGG | 2 cut(s) | 82, 194 |
| PspN4I | GGNNCC | 4 cut(s) | 48, 77, 114, 559 |
| PspPI | GGNCC | 1 cut(s) | 113 |
| PstI | CTGCAG | 3 cut(s) | 137, 402, 520 |
| PvuII | CAGCTG | 2 cut(s) | 241, 460 |
| RruI | TCGCGA | 1 cut(s) | 276 |
| RsaI | GTAC | 1 cut(s) | 524 |
| RsaNI | GTAC | 1 cut(s) | 523 |
| SaqAI | TTAA | 2 cut(s) | 381, 507 |
| Sau3AI | GATC | 1 cut(s) | 319 |
| Sau96I | GGNCC | 1 cut(s) | 113 |
| ScrFI | CCNGG | 2 cut(s) | 84, 196 |
| SduI | GDGCHC | 1 cut(s) | 51 |
| SfaNI | GCATC | 3 cut(s) | 250, 259, 532 |
| SfcI | CTRYAG | 3 cut(s) | 133, 398, 516 |
| SinI | GGWCC | 1 cut(s) | 113 |
| SmlI | CTYRAG | 1 cut(s) | 308 |
| SmoI | CTYRAG | 1 cut(s) | 308 |
| Sse9I | AATT | 1 cut(s) | 187 |
| SsiI | CCGC | 5 cut(s) | 313, 371, 414, 477, 489 |
| SspMI | CTAG | 1 cut(s) | 68 |
| StyD4I | CCNGG | 2 cut(s) | 82, 194 |
| StyI | CCWWGG | 2 cut(s) | 246, 375 |
| TaaI | ACNGT | 4 cut(s) | 117, 129, 146, 496 |
| TaiI | ACGT | 1 cut(s) | 573 |
| TaqI | TCGA | 3 cut(s) | 205, 297, 426 |
| TasI | AATT | 1 cut(s) | 187 |
| TauI | GCSGC | 3 cut(s) | 374, 416, 491 |
| TfiI | GAWTC | 3 cut(s) | 95, 334, 407 |
| Tru1I | TTAA | 2 cut(s) | 381, 507 |
| Tru9I | TTAA | 2 cut(s) | 381, 507 |
| TscAI | CASTG | 1 cut(s) | 134 |
| TseFI | GTSAC | 1 cut(s) | 140 |
| TseI | GCWGC | 7 cut(s) | 132, 135, 199, 210, 238, 452, 518 |
| Tsp45I | GTSAC | 1 cut(s) | 140 |
| TspDTI | ATGAA | 2 cut(s) | 26, 200 |
| TspGWI | ACGGA | 2 cut(s) | 109, 412 |
| TspRI | CASTG | 1 cut(s) | 134 |
| VpaK11BI | GGWCC | 1 cut(s) | 113 |
| XapI | RAATTY | 1 cut(s) | 187 |
| XspI | CTAG | 1 cut(s) | 68 |