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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 45 |
| AccII | CGCG | 4 cut(s) | 11, 125, 143, 188 |
| AcoI | YGGCCR | 3 cut(s) | 316, 335, 349 |
| AcsI | RAATTY | 1 cut(s) | 342 |
| AcyI | GRCGYC | 1 cut(s) | 42 |
| AfaI | GTAC | 1 cut(s) | 298 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 235 |
| AgsI | TTSAA | 1 cut(s) | 131 |
| AluBI | AGCT | 1 cut(s) | 55 |
| AluI | AGCT | 1 cut(s) | 55 |
| Ama87I | CYCGRG | 1 cut(s) | 291 |
| AoxI | GGCC | 5 cut(s) | 240, 276, 316, 335, 349 |
| ApoI | RAATTY | 1 cut(s) | 342 |
| AspLEI | GCGC | 4 cut(s) | 11, 125, 127, 143 |
| AspS9I | GGNCC | 1 cut(s) | 31 |
| AsuC2I | CCSGG | 3 cut(s) | 229, 292, 293 |
| AsuHPI | GGTGA | 2 cut(s) | 55, 206 |
| AvaI | CYCGRG | 1 cut(s) | 291 |
| AvaII | GGWCC | 1 cut(s) | 31 |
| BceAI | ACGGC | 2 cut(s) | 331, 336 |
| BcnI | CCSGG | 3 cut(s) | 229, 292, 293 |
| BfaI | CTAG | 1 cut(s) | 72 |
| BisI | GCNGC | 8 cut(s) | 144, 183, 186, 225, 267, 319, 332, 335 |
| BlsI | GCNGC | 8 cut(s) | 145, 184, 187, 226, 268, 320, 333, 336 |
| Bme1390I | CCNGG | 3 cut(s) | 229, 292, 293 |
| Bme18I | GGWCC | 1 cut(s) | 31 |
| BmeT110I | CYCGRG | 1 cut(s) | 291 |
| BmgT120I | GGNCC | 1 cut(s) | 31 |
| BmrFI | CCNGG | 3 cut(s) | 229, 292, 293 |
| BmsI | GCATC | 1 cut(s) | 169 |
| BpuMI | CCSGG | 3 cut(s) | 229, 292, 293 |
| BsaHI | GRCGYC | 1 cut(s) | 42 |
| BsaJI | CCNNGG | 3 cut(s) | 291, 292, 322 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 235 |
| BseDI | CCNNGG | 3 cut(s) | 291, 292, 322 |
| BseGI | GGATG | 1 cut(s) | 184 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 235 |
| BsePI | GCGCGC | 1 cut(s) | 123 |
| BseRI | GAGGAG | 2 cut(s) | 212, 251 |
| BseX3I | CGGCCG | 3 cut(s) | 316, 335, 349 |
| Bsh1236I | CGCG | 4 cut(s) | 11, 125, 143, 188 |
| Bsh1285I | CGRYCG | 3 cut(s) | 319, 338, 352 |
| BshFI | GGCC | 5 cut(s) | 242, 278, 318, 337, 351 |
| BsiEI | CGRYCG | 3 cut(s) | 319, 338, 352 |
| BsiHKCI | CYCGRG | 1 cut(s) | 291 |
| BsiSI | CCGG | 2 cut(s) | 229, 292 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 235 |
| BsnI | GGCC | 5 cut(s) | 242, 278, 318, 337, 351 |
| BsoBI | CYCGRG | 1 cut(s) | 291 |
| Bsp143I | GATC | 1 cut(s) | 201 |
| BspANI | GGCC | 5 cut(s) | 242, 278, 318, 337, 351 |
| BspFNI | CGCG | 4 cut(s) | 11, 125, 143, 188 |
| BssECI | CCNNGG | 3 cut(s) | 291, 292, 322 |
| BssHII | GCGCGC | 1 cut(s) | 123 |
| BssMI | GATC | 1 cut(s) | 201 |
| BssNI | GRCGYC | 1 cut(s) | 42 |
| BssT1I | CCWWGG | 1 cut(s) | 322 |
| BstACI | GRCGYC | 1 cut(s) | 42 |
| BstC8I | GCNNGC | 2 cut(s) | 53, 125 |
| BstDEI | CTNAG | 1 cut(s) | 93 |
| BstF5I | GGATG | 1 cut(s) | 184 |
| BstFNI | CGCG | 4 cut(s) | 11, 125, 143, 188 |
| BstHHI | GCGC | 4 cut(s) | 11, 125, 127, 143 |
| BstKTI | GATC | 1 cut(s) | 204 |
| BstMBI | GATC | 1 cut(s) | 201 |
| BstMCI | CGRYCG | 3 cut(s) | 319, 338, 352 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 275 |
| BstSCI | CCNGG | 3 cut(s) | 227, 290, 291 |
| BstUI | CGCG | 4 cut(s) | 11, 125, 143, 188 |
| BstZI | CGGCCG | 3 cut(s) | 316, 335, 349 |
| BsuRI | GGCC | 5 cut(s) | 242, 278, 318, 337, 351 |
| BtsCI | GGATG | 1 cut(s) | 184 |
| Cac8I | GCNNGC | 2 cut(s) | 53, 125 |
| CfoI | GCGC | 4 cut(s) | 11, 125, 127, 143 |
| Cfr13I | GGNCC | 1 cut(s) | 31 |
| Cfr9I | CCCGGG | 1 cut(s) | 291 |
| Csp6I | GTAC | 1 cut(s) | 297 |
| CviJI | RGCY | 7 cut(s) | 55, 224, 242, 278, 318, 337, 351 |
| CviKI_1 | RGCY | 7 cut(s) | 55, 224, 242, 278, 318, 337, 351 |
| CviQI | GTAC | 1 cut(s) | 297 |
| DdeI | CTNAG | 1 cut(s) | 93 |
| DpnI | GATC | 1 cut(s) | 203 |
| DpnII | GATC | 1 cut(s) | 201 |
| EaeI | YGGCCR | 3 cut(s) | 316, 335, 349 |
| EagI | CGGCCG | 3 cut(s) | 316, 335, 349 |
| EciI | GGCGGA | 1 cut(s) | 44 |
| EclXI | CGGCCG | 3 cut(s) | 316, 335, 349 |
| Eco130I | CCWWGG | 1 cut(s) | 322 |
| Eco147I | AGGCCT | 1 cut(s) | 278 |
| Eco47I | GGWCC | 1 cut(s) | 31 |
| Eco52I | CGGCCG | 3 cut(s) | 316, 335, 349 |
| Eco88I | CYCGRG | 1 cut(s) | 291 |
| EcoT14I | CCWWGG | 1 cut(s) | 322 |
| ErhI | CCWWGG | 1 cut(s) | 322 |
| FaiI | YATR | 2 cut(s) | 87, 167 |
| Fnu4HI | GCNGC | 8 cut(s) | 144, 183, 186, 225, 267, 319, 332, 335 |
| FokI | GGATG | 1 cut(s) | 191 |
| Fsp4HI | GCNGC | 8 cut(s) | 144, 183, 186, 225, 267, 319, 332, 335 |
| FspBI | CTAG | 1 cut(s) | 72 |
| GlaI | GCGC | 4 cut(s) | 10, 124, 126, 142 |
| GluI | GCNGC | 8 cut(s) | 144, 183, 186, 225, 267, 319, 332, 335 |
| HaeIII | GGCC | 5 cut(s) | 242, 278, 318, 337, 351 |
| HapII | CCGG | 2 cut(s) | 229, 292 |
| HhaI | GCGC | 4 cut(s) | 11, 125, 127, 143 |
| Hin1I | GRCGYC | 1 cut(s) | 42 |
| Hin6I | GCGC | 4 cut(s) | 9, 123, 125, 141 |
| HinP1I | GCGC | 4 cut(s) | 9, 123, 125, 141 |
| HindIII | AAGCTT | 1 cut(s) | 53 |
| HinfI | GANTC | 1 cut(s) | 303 |
| HpaII | CCGG | 2 cut(s) | 229, 292 |
| HphI | GGTGA | 2 cut(s) | 55, 206 |
| Hpy188III | TCNNGA | 2 cut(s) | 72, 205 |
| Hpy99I | CGWCG | 2 cut(s) | 44, 47 |
| HpyAV | CCTTC | 4 cut(s) | 13, 19, 142, 184 |
| HpyCH4IV | ACGT | 1 cut(s) | 42 |
| HpyCH4V | TGCA | 3 cut(s) | 159, 172, 214 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 275 |
| HpyF3I | CTNAG | 1 cut(s) | 93 |
| HpySE526I | ACGT | 1 cut(s) | 42 |
| Hsp92I | GRCGYC | 1 cut(s) | 42 |
| HspAI | GCGC | 4 cut(s) | 9, 123, 125, 141 |
| Kzo9I | GATC | 1 cut(s) | 201 |
| LmnI | GCTCC | 1 cut(s) | 108 |
| LpnPI | CCDG | 4 cut(s) | 97, 242, 285, 305 |
| LweI | GCATC | 1 cut(s) | 169 |
| MaeI | CTAG | 1 cut(s) | 72 |
| MaeII | ACGT | 1 cut(s) | 42 |
| MaeIII | GTNAC | 1 cut(s) | 61 |
| MalI | GATC | 1 cut(s) | 203 |
| MboI | GATC | 1 cut(s) | 201 |
| MluCI | AATT | 3 cut(s) | 88, 255, 342 |
| MmeI | TCCRAC | 2 cut(s) | 86, 213 |
| MnlI | CCTC | 6 cut(s) | 110, 190, 201, 229, 232, 268 |
| MseI | TTAA | 2 cut(s) | 282, 355 |
| MslI | CAYNNNNRTG | 1 cut(s) | 177 |
| MspI | CCGG | 2 cut(s) | 229, 292 |
| MspR9I | CCNGG | 3 cut(s) | 229, 292, 293 |
| MvnI | CGCG | 4 cut(s) | 11, 125, 143, 188 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 275 |
| NciI | CCSGG | 3 cut(s) | 229, 292, 293 |
| NdeII | GATC | 1 cut(s) | 201 |
| NmuCI | GTSAC | 1 cut(s) | 61 |
| PauI | GCGCGC | 1 cut(s) | 123 |
| PceI | AGGCCT | 1 cut(s) | 278 |
| PfeI | GAWTC | 1 cut(s) | 303 |
| PkrI | GCNGC | 8 cut(s) | 145, 184, 187, 226, 268, 320, 333, 336 |
| PspPI | GGNCC | 1 cut(s) | 31 |
| PteI | GCGCGC | 1 cut(s) | 123 |
| RsaI | GTAC | 1 cut(s) | 298 |
| RsaNI | GTAC | 1 cut(s) | 297 |
| RseI | CAYNNNNRTG | 1 cut(s) | 177 |
| SaqAI | TTAA | 2 cut(s) | 282, 355 |
| SatI | GCNGC | 8 cut(s) | 144, 183, 186, 225, 267, 319, 332, 335 |
| Sau3AI | GATC | 1 cut(s) | 201 |
| Sau96I | GGNCC | 1 cut(s) | 31 |
| ScrFI | CCNGG | 3 cut(s) | 229, 292, 293 |
| SetI | ASST | 7 cut(s) | 36, 45, 57, 99, 121, 212, 328 |
| SfaNI | GCATC | 1 cut(s) | 169 |
| SinI | GGWCC | 1 cut(s) | 31 |
| SmaI | CCCGGG | 1 cut(s) | 293 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 177 |
| Sse9I | AATT | 3 cut(s) | 88, 255, 342 |
| SseBI | AGGCCT | 1 cut(s) | 278 |
| SspMI | CTAG | 1 cut(s) | 72 |
| StuI | AGGCCT | 1 cut(s) | 278 |
| StyD4I | CCNGG | 3 cut(s) | 227, 290, 291 |
| StyI | CCWWGG | 1 cut(s) | 322 |
| TaiI | ACGT | 1 cut(s) | 45 |
| TaqI | TCGA | 1 cut(s) | 39 |
| TasI | AATT | 3 cut(s) | 88, 255, 342 |
| TauI | GCSGC | 8 cut(s) | 146, 185, 188, 227, 269, 321, 334, 337 |
| TfiI | GAWTC | 1 cut(s) | 303 |
| Tru1I | TTAA | 2 cut(s) | 282, 355 |
| Tru9I | TTAA | 2 cut(s) | 282, 355 |
| TseFI | GTSAC | 1 cut(s) | 61 |
| Tsp45I | GTSAC | 1 cut(s) | 61 |
| TspMI | CCCGGG | 1 cut(s) | 291 |
| VpaK11BI | GGWCC | 1 cut(s) | 31 |
| XapI | RAATTY | 1 cut(s) | 342 |
| XbaI | TCTAGA | 1 cut(s) | 71 |
| XmaI | CCCGGG | 1 cut(s) | 291 |
| XspI | CTAG | 1 cut(s) | 72 |
| ZraI | GACGTC | 1 cut(s) | 43 |