Putative gypsy type transposon
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 3 cut(s) | 109, 615, 784 |
| AccB1I | GGYRCC | 8 cut(s) | 491, 557, 1570, 2018, 2162, 2198, 2303, 2387 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 810, 2208 |
| AccBSI | CCGCTC | 1 cut(s) | 1872 |
| AccII | CGCG | 5 cut(s) | 56, 1463, 1612, 1689, 2085 |
| AccIII | TCCGGA | 1 cut(s) | 174 |
| AclWI | GGATC | 2 cut(s) | 673, 1212 |
| AcoI | YGGCCR | 2 cut(s) | 105, 1500 |
| AcuI | CTGAAG | 3 cut(s) | 740, 1085, 1988 |
| AcyI | GRCGYC | 5 cut(s) | 1260, 1571, 1849, 2019, 2388 |
| AdeI | CACNNNGTG | 1 cut(s) | 242 |
| AfaI | GTAC | 6 cut(s) | 882, 1040, 1146, 1316, 2111, 2269 |
| AfeI | AGCGCT | 1 cut(s) | 2071 |
| AflIII | ACRYGT | 2 cut(s) | 807, 1951 |
| AgsI | TTSAA | 4 cut(s) | 1229, 1587, 1997, 2300 |
| AhlI | ACTAGT | 1 cut(s) | 269 |
| AjnI | CCWGG | 7 cut(s) | 80, 102, 138, 915, 1764, 1922, 2287 |
| AleI | CACNNNNGTG | 1 cut(s) | 1613 |
| AluBI | AGCT | 8 cut(s) | 28, 261, 463, 646, 967, 1363, 1878, 2044 |
| AluI | AGCT | 8 cut(s) | 28, 261, 463, 646, 967, 1363, 1878, 2044 |
| Alw21I | GWGCWC | 5 cut(s) | 263, 465, 708, 750, 1880 |
| Alw44I | GTGCAC | 1 cut(s) | 704 |
| AlwI | GGATC | 2 cut(s) | 673, 1212 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 291 |
| Ama87I | CYCGRG | 1 cut(s) | 1511 |
| Aor13HI | TCCGGA | 1 cut(s) | 174 |
| Aor51HI | AGCGCT | 1 cut(s) | 2071 |
| ApaI | GGGCCC | 1 cut(s) | 1687 |
| ApaLI | GTGCAC | 1 cut(s) | 704 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1618, 1650 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2001 |
| AsuC2I | CCSGG | 4 cut(s) | 633, 1239, 1512, 1513 |
| AsuHPI | GGTGA | 7 cut(s) | 418, 652, 1439, 1543, 1817, 1817, 2063 |
| AsuNHI | GCTAGC | 1 cut(s) | 425 |
| AvaI | CYCGRG | 1 cut(s) | 1511 |
| AvaII | GGWCC | 5 cut(s) | 169, 863, 1050, 1279, 1351 |
| AxyI | CCTNAGG | 2 cut(s) | 723, 980 |
| BaeGI | GKGCMC | 2 cut(s) | 708, 1687 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 872, 905 |
| BanI | GGYRCC | 8 cut(s) | 491, 557, 1570, 2018, 2162, 2198, 2303, 2387 |
| BanII | GRGCYC | 6 cut(s) | 88, 263, 465, 1376, 1687, 1880 |
| BauI | CACGAG | 2 cut(s) | 707, 1218 |
| BbsI | GAAGAC | 1 cut(s) | 1346 |
| Bbv12I | GWGCWC | 5 cut(s) | 263, 465, 708, 750, 1880 |
| BccI | CCATC | 2 cut(s) | 172, 2210 |
| BciT130I | CCWGG | 7 cut(s) | 82, 104, 140, 917, 1766, 1924, 2289 |
| BciVI | GTATCC | 1 cut(s) | 520 |
| BcnI | CCSGG | 4 cut(s) | 633, 1239, 1512, 1513 |
| BcuI | ACTAGT | 1 cut(s) | 269 |
| BfaI | CTAG | 3 cut(s) | 158, 270, 426 |
| BfmI | CTRYAG | 4 cut(s) | 884, 1619, 1900, 2186 |
| BfoI | RGCGCY | 9 cut(s) | 830, 916, 962, 1370, 1481, 1574, 2022, 2073, 2391 |
| BfuAI | ACCTGC | 3 cut(s) | 109, 615, 784 |
| BfuI | GTATCC | 1 cut(s) | 520 |
| BglI | GCCNNNNNGGC | 4 cut(s) | 43, 104, 131, 2027 |
| BglII | AGATCT | 2 cut(s) | 759, 1104 |
| BlpI | GCTNAGC | 3 cut(s) | 340, 440, 1370 |
| Bme18I | GGWCC | 5 cut(s) | 169, 863, 1050, 1279, 1351 |
| BmeT110I | CYCGRG | 1 cut(s) | 1511 |
| BmrI | ACTGGG | 4 cut(s) | 248, 1689, 2218, 2337 |
| BmsI | GCATC | 5 cut(s) | 24, 1654, 2214, 2228, 2362 |
| BmtI | GCTAGC | 1 cut(s) | 429 |
| BmuI | ACTGGG | 4 cut(s) | 248, 1689, 2218, 2337 |
| BpiI | GAAGAC | 1 cut(s) | 1346 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 659, 691 |
| BpmI | CTGGAG | 3 cut(s) | 44, 1630, 2066 |
| Bpu10I | CCTNAGC | 1 cut(s) | 87 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 340, 440, 1370 |
| BpuEI | CTTGAG | 1 cut(s) | 1864 |
| BpuMI | CCSGG | 4 cut(s) | 633, 1239, 1512, 1513 |
| Bsa29I | ATCGAT | 1 cut(s) | 2222 |
| BsaHI | GRCGYC | 5 cut(s) | 1260, 1571, 1849, 2019, 2388 |
| BsaWI | WCCGGW | 3 cut(s) | 174, 624, 851 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1055, 1085 |
| Bse118I | RCCGGY | 2 cut(s) | 1498, 2227 |
| Bse1I | ACTGG | 6 cut(s) | 243, 903, 1684, 2213, 2343, 2364 |
| Bse21I | CCTNAGG | 2 cut(s) | 723, 980 |
| Bse3DI | GCAATG | 3 cut(s) | 780, 2145, 2280 |
| BseAI | TCCGGA | 1 cut(s) | 174 |
| BseBI | CCWGG | 7 cut(s) | 82, 104, 140, 917, 1766, 1924, 2289 |
| BseCI | ATCGAT | 1 cut(s) | 2222 |
| BseGI | GGATG | 4 cut(s) | 183, 591, 670, 1669 |
| BseMI | GCAATG | 3 cut(s) | 780, 2145, 2280 |
| BseMII | CTCAG | 8 cut(s) | 101, 354, 454, 714, 955, 971, 1361, 2064 |
| BseNI | ACTGG | 6 cut(s) | 243, 903, 1684, 2213, 2343, 2364 |
| BseRI | GAGGAG | 3 cut(s) | 1673, 1900, 2092 |
| BseSI | GKGCMC | 2 cut(s) | 708, 1687 |
| BseYI | CCCAGC | 2 cut(s) | 1188, 1537 |
| BsgI | GTGCAG | 3 cut(s) | 501, 1193, 1538 |
| Bsh1236I | CGCG | 5 cut(s) | 56, 1463, 1612, 1689, 2085 |
| Bsh1285I | CGRYCG | 2 cut(s) | 870, 2232 |
| BshNI | GGYRCC | 8 cut(s) | 491, 557, 1570, 2018, 2162, 2198, 2303, 2387 |
| BshVI | ATCGAT | 1 cut(s) | 2222 |
| BsiEI | CGRYCG | 2 cut(s) | 870, 2232 |
| BsiHKAI | GWGCWC | 5 cut(s) | 263, 465, 708, 750, 1880 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1511 |
| BsiSI | CCGG | 8 cut(s) | 175, 625, 633, 852, 1238, 1499, 1512, 2228 |
| BslFI | GGGAC | 5 cut(s) | 131, 1468, 1921, 1940, 2340 |
| BsmFI | GGGAC | 5 cut(s) | 131, 1468, 1921, 1940, 2340 |
| BsoBI | CYCGRG | 1 cut(s) | 1511 |
| Bsp120I | GGGCCC | 1 cut(s) | 1683 |
| Bsp1286I | GDGCHC | 8 cut(s) | 88, 263, 465, 708, 750, 1376, 1687, 1880 |
| Bsp13I | TCCGGA | 1 cut(s) | 174 |
| Bsp143I | GATC | 6 cut(s) | 66, 678, 759, 1104, 1204, 1290 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 340, 440, 1370 |
| Bsp19I | CCATGG | 2 cut(s) | 1275, 2166 |
| BspCNI | CTCAG | 8 cut(s) | 100, 353, 453, 715, 954, 972, 1362, 2065 |
| BspDI | ATCGAT | 1 cut(s) | 2222 |
| BspEI | TCCGGA | 1 cut(s) | 174 |
| BspFNI | CGCG | 5 cut(s) | 56, 1463, 1612, 1689, 2085 |
| BspMAI | CTGCAG | 3 cut(s) | 888, 1623, 2190 |
| BspMI | ACCTGC | 3 cut(s) | 109, 615, 784 |
| BspOI | GCTAGC | 1 cut(s) | 429 |
| BspPI | GGATC | 2 cut(s) | 673, 1212 |
| BspQI | GCTCTTC | 1 cut(s) | 453 |
| BspT107I | GGYRCC | 8 cut(s) | 491, 557, 1570, 2018, 2162, 2198, 2303, 2387 |
| BsrBI | CCGCTC | 1 cut(s) | 1872 |
| BsrDI | GCAATG | 3 cut(s) | 780, 2145, 2280 |
| BsrFI | RCCGGY | 2 cut(s) | 1498, 2227 |
| BsrI | ACTGG | 6 cut(s) | 243, 903, 1684, 2213, 2343, 2364 |
| BssAI | RCCGGY | 2 cut(s) | 1498, 2227 |
| BssMI | GATC | 6 cut(s) | 66, 678, 759, 1104, 1204, 1290 |
| BssNI | GRCGYC | 5 cut(s) | 1260, 1571, 1849, 2019, 2388 |
| BssSI | CACGAG | 2 cut(s) | 707, 1218 |
| BssT1I | CCWWGG | 5 cut(s) | 952, 1275, 1722, 1980, 2166 |
| Bst2BI | CACGAG | 2 cut(s) | 707, 1218 |
| Bst2UI | CCWGG | 7 cut(s) | 82, 104, 140, 917, 1766, 1924, 2289 |
| Bst4CI | ACNGT | 5 cut(s) | 661, 871, 1283, 1345, 1805 |
| Bst6I | CTCTTC | 3 cut(s) | 453, 1104, 1650 |
| BstACI | GRCGYC | 5 cut(s) | 1260, 1571, 1849, 2019, 2388 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 291 |
| BstDEI | CTNAG | 9 cut(s) | 87, 340, 440, 466, 723, 941, 980, 1370, 2073 |
| BstDSI | CCRYGG | 6 cut(s) | 870, 1023, 1275, 1668, 2100, 2166 |
| BstF5I | GGATG | 4 cut(s) | 183, 591, 670, 1669 |
| BstFNI | CGCG | 5 cut(s) | 56, 1463, 1612, 1689, 2085 |
| BstH2I | RGCGCY | 9 cut(s) | 830, 916, 962, 1370, 1481, 1574, 2022, 2073, 2391 |
| BstKTI | GATC | 6 cut(s) | 69, 681, 762, 1107, 1207, 1293 |
| BstMBI | GATC | 6 cut(s) | 66, 678, 759, 1104, 1204, 1290 |
| BstMCI | CGRYCG | 2 cut(s) | 870, 2232 |
| BstNI | CCWGG | 7 cut(s) | 82, 104, 140, 917, 1766, 1924, 2289 |
| BstNSI | RCATGY | 2 cut(s) | 811, 1955 |
| BstSFI | CTRYAG | 4 cut(s) | 884, 1619, 1900, 2186 |
| BstSLI | GKGCMC | 2 cut(s) | 708, 1687 |
| BstUI | CGCG | 5 cut(s) | 56, 1463, 1612, 1689, 2085 |
| BstV2I | GAAGAC | 1 cut(s) | 1346 |
| BstX2I | RGATCY | 2 cut(s) | 759, 1104 |
| BstYI | RGATCY | 2 cut(s) | 759, 1104 |
| Bsu15I | ATCGAT | 1 cut(s) | 2222 |
| Bsu36I | CCTNAGG | 2 cut(s) | 723, 980 |
| BsuI | GTATCC | 1 cut(s) | 520 |
| BsuTUI | ATCGAT | 1 cut(s) | 2222 |
| BtgI | CCRYGG | 6 cut(s) | 870, 1023, 1275, 1668, 2100, 2166 |
| BtsCI | GGATG | 4 cut(s) | 183, 591, 670, 1669 |
| BtsI | GCAGTG | 1 cut(s) | 1529 |
| BtsIMutI | CAGTG | 5 cut(s) | 236, 1152, 1350, 1529, 2371 |
| BveI | ACCTGC | 3 cut(s) | 109, 615, 784 |
| CaiI | CAGNNNCTG | 1 cut(s) | 291 |
| Cfr10I | RCCGGY | 2 cut(s) | 1498, 2227 |
| Cfr9I | CCCGGG | 1 cut(s) | 1511 |
| ClaI | ATCGAT | 1 cut(s) | 2222 |
| CseI | GACGC | 4 cut(s) | 8, 638, 1268, 1838 |
| Csp6I | GTAC | 6 cut(s) | 881, 1039, 1145, 1315, 2110, 2268 |
| CviAII | CATG | 8 cut(s) | 540, 808, 991, 1276, 1312, 1952, 2065, 2167 |
| CviQI | GTAC | 6 cut(s) | 881, 1039, 1145, 1315, 2110, 2268 |
| DdeI | CTNAG | 9 cut(s) | 87, 340, 440, 466, 723, 941, 980, 1370, 2073 |
| DinI | GGCGCC | 3 cut(s) | 1572, 2020, 2389 |
| DpnI | GATC | 6 cut(s) | 68, 680, 761, 1106, 1206, 1292 |
| DpnII | GATC | 6 cut(s) | 66, 678, 759, 1104, 1204, 1290 |
| DraIII | CACNNNGTG | 1 cut(s) | 242 |
| EaeI | YGGCCR | 2 cut(s) | 105, 1500 |
| Eam1104I | CTCTTC | 3 cut(s) | 453, 1104, 1650 |
| EarI | CTCTTC | 3 cut(s) | 453, 1104, 1650 |
| EciI | GGCGGA | 5 cut(s) | 890, 1224, 1707, 2244, 2346 |
| Ecl136II | GAGCTC | 3 cut(s) | 261, 463, 1878 |
| Eco130I | CCWWGG | 5 cut(s) | 952, 1275, 1722, 1980, 2166 |
| Eco147I | AGGCCT | 1 cut(s) | 1591 |
| Eco24I | GRGCYC | 6 cut(s) | 88, 263, 465, 1376, 1687, 1880 |
| Eco47I | GGWCC | 5 cut(s) | 169, 863, 1050, 1279, 1351 |
| Eco47III | AGCGCT | 1 cut(s) | 2071 |
| Eco53kI | GAGCTC | 3 cut(s) | 261, 463, 1878 |
| Eco57I | CTGAAG | 3 cut(s) | 740, 1085, 1988 |
| Eco81I | CCTNAGG | 2 cut(s) | 723, 980 |
| Eco88I | CYCGRG | 1 cut(s) | 1511 |
| EcoICRI | GAGCTC | 3 cut(s) | 261, 463, 1878 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1683 |
| EcoRII | CCWGG | 7 cut(s) | 80, 102, 138, 915, 1764, 1922, 2287 |
| EcoT14I | CCWWGG | 5 cut(s) | 952, 1275, 1722, 1980, 2166 |
| EcoT38I | GRGCYC | 6 cut(s) | 88, 263, 465, 1376, 1687, 1880 |
| EgeI | GGCGCC | 3 cut(s) | 1572, 2020, 2389 |
| EheI | GGCGCC | 3 cut(s) | 1572, 2020, 2389 |
| ErhI | CCWWGG | 5 cut(s) | 952, 1275, 1722, 1980, 2166 |
| FaeI | CATG | 8 cut(s) | 543, 811, 994, 1279, 1315, 1955, 2068, 2170 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 308, 340 |
| FaqI | GGGAC | 5 cut(s) | 131, 1468, 1921, 1940, 2340 |
| FatI | CATG | 8 cut(s) | 539, 807, 990, 1275, 1311, 1951, 2064, 2166 |
| FokI | GGATG | 4 cut(s) | 190, 598, 677, 1676 |
| FriOI | GRGCYC | 6 cut(s) | 88, 263, 465, 1376, 1687, 1880 |
| FspBI | CTAG | 3 cut(s) | 158, 270, 426 |
| GsaI | CCCAGC | 2 cut(s) | 1192, 1541 |
| GsuI | CTGGAG | 3 cut(s) | 44, 1630, 2066 |
| HaeII | RGCGCY | 9 cut(s) | 830, 916, 962, 1370, 1481, 1574, 2022, 2073, 2391 |
| HapII | CCGG | 8 cut(s) | 175, 625, 633, 852, 1238, 1499, 1512, 2228 |
| HgaI | GACGC | 4 cut(s) | 8, 638, 1268, 1838 |
| Hin1I | GRCGYC | 5 cut(s) | 1260, 1571, 1849, 2019, 2388 |
| Hin1II | CATG | 8 cut(s) | 543, 811, 994, 1279, 1315, 1955, 2068, 2170 |
| HincII | GTYRAC | 3 cut(s) | 604, 937, 1637 |
| HindII | GTYRAC | 3 cut(s) | 604, 937, 1637 |
| HpaII | CCGG | 8 cut(s) | 175, 625, 633, 852, 1238, 1499, 1512, 2228 |
| HphI | GGTGA | 7 cut(s) | 418, 652, 1439, 1543, 1817, 1817, 2063 |
| Hpy166II | GTNNAC | 5 cut(s) | 604, 706, 937, 1351, 1637 |
| Hpy188I | TCNGA | 9 cut(s) | 33, 185, 360, 759, 1087, 1104, 1381, 1797, 2349 |
| Hpy188III | TCNNGA | 4 cut(s) | 23, 175, 1267, 1853 |
| Hpy8I | GTNNAC | 5 cut(s) | 604, 706, 937, 1351, 1637 |
| Hpy99I | CGWCG | 6 cut(s) | 373, 661, 951, 1072, 1601, 2363 |
| HpyCH4III | ACNGT | 5 cut(s) | 661, 871, 1283, 1345, 1805 |
| HpyCH4IV | ACGT | 2 cut(s) | 1017, 1070 |
| HpyF3I | CTNAG | 9 cut(s) | 87, 340, 440, 466, 723, 941, 980, 1370, 2073 |
| HpySE526I | ACGT | 2 cut(s) | 1017, 1070 |
| Hsp92I | GRCGYC | 5 cut(s) | 1260, 1571, 1849, 2019, 2388 |
| Hsp92II | CATG | 8 cut(s) | 543, 811, 994, 1279, 1315, 1955, 2068, 2170 |
| KasI | GGCGCC | 3 cut(s) | 1570, 2018, 2387 |
| Kpn2I | TCCGGA | 1 cut(s) | 174 |
| KroI | GCCGGC | 1 cut(s) | 1498 |
| KroNI | GCCGGC | 1 cut(s) | 1500 |
| Kzo9I | GATC | 6 cut(s) | 66, 678, 759, 1104, 1204, 1290 |
| LguI | GCTCTTC | 1 cut(s) | 453 |
| LweI | GCATC | 5 cut(s) | 24, 1654, 2214, 2228, 2362 |
| MaeI | CTAG | 3 cut(s) | 158, 270, 426 |
| MaeII | ACGT | 2 cut(s) | 1017, 1070 |
| MaeIII | GTNAC | 7 cut(s) | 364, 406, 730, 1256, 1427, 1549, 1760 |
| MalI | GATC | 6 cut(s) | 68, 680, 761, 1106, 1206, 1292 |
| MbiI | CCGCTC | 1 cut(s) | 1872 |
| MboI | GATC | 6 cut(s) | 66, 678, 759, 1104, 1204, 1290 |
| MboII | GAAGA | 7 cut(s) | 470, 1091, 1351, 1534, 1667, 1711, 2257 |
| MflI | RGATCY | 2 cut(s) | 759, 1104 |
| MhlI | GDGCHC | 8 cut(s) | 88, 263, 465, 708, 750, 1376, 1687, 1880 |
| MluCI | AATT | 3 cut(s) | 188, 1077, 1297 |
| Mly113I | GGCGCC | 3 cut(s) | 1571, 2019, 2388 |
| MlyI | GAGTC | 8 cut(s) | 153, 542, 1210, 1637, 1763, 2021, 2114, 2328 |
| MmeI | TCCRAC | 5 cut(s) | 163, 1065, 1077, 1545, 1921 |
| MroI | TCCGGA | 1 cut(s) | 174 |
| MroNI | GCCGGC | 1 cut(s) | 1498 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2001 |
| MseI | TTAA | 4 cut(s) | 326, 831, 1080, 1137 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1422, 1613 |
| MspA1I | CMGCKG | 8 cut(s) | 344, 489, 689, 1177, 1541, 1650, 2008, 2044 |
| MspI | CCGG | 8 cut(s) | 175, 625, 633, 852, 1238, 1499, 1512, 2228 |
| MvaI | CCWGG | 7 cut(s) | 82, 104, 140, 917, 1766, 1924, 2289 |
| MvnI | CGCG | 5 cut(s) | 56, 1463, 1612, 1689, 2085 |
| NaeI | GCCGGC | 1 cut(s) | 1500 |
| NarI | GGCGCC | 3 cut(s) | 1571, 2019, 2388 |
| NciI | CCSGG | 4 cut(s) | 633, 1239, 1512, 1513 |
| NcoI | CCATGG | 2 cut(s) | 1275, 2166 |
| NdeII | GATC | 6 cut(s) | 66, 678, 759, 1104, 1204, 1290 |
| NgoMIV | GCCGGC | 1 cut(s) | 1498 |
| NheI | GCTAGC | 1 cut(s) | 425 |
| NlaIII | CATG | 8 cut(s) | 543, 811, 994, 1279, 1315, 1955, 2068, 2170 |
| NmeAIII | GCCGAG | 3 cut(s) | 1312, 1813, 2056 |
| NmuCI | GTSAC | 7 cut(s) | 364, 406, 730, 1256, 1427, 1549, 1760 |
| NspI | RCATGY | 2 cut(s) | 811, 1955 |
| OliI | CACNNNNGTG | 1 cut(s) | 1613 |
| PceI | AGGCCT | 1 cut(s) | 1591 |
| PciI | ACATGT | 2 cut(s) | 807, 1951 |
| PciSI | GCTCTTC | 1 cut(s) | 453 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 561 |
| PdiI | GCCGGC | 1 cut(s) | 1500 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2001 |
| PfeI | GAWTC | 2 cut(s) | 334, 986 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 810, 2208 |
| PleI | GAGTC | 8 cut(s) | 152, 541, 1210, 1637, 1763, 2020, 2113, 2328 |
| PluTI | GGCGCC | 3 cut(s) | 1574, 2022, 2391 |
| PpsI | GAGTC | 8 cut(s) | 152, 541, 1210, 1637, 1763, 2020, 2113, 2328 |
| PscI | ACATGT | 2 cut(s) | 807, 1951 |
| Psp124BI | GAGCTC | 3 cut(s) | 263, 465, 1880 |
| Psp6I | CCWGG | 7 cut(s) | 80, 102, 138, 915, 1764, 1922, 2287 |
| PspFI | CCCAGC | 2 cut(s) | 1188, 1537 |
| PspGI | CCWGG | 7 cut(s) | 80, 102, 138, 915, 1764, 1922, 2287 |
| PspOMI | GGGCCC | 1 cut(s) | 1683 |
| PstI | CTGCAG | 3 cut(s) | 888, 1623, 2190 |
| PstNI | CAGNNNCTG | 1 cut(s) | 291 |
| PsuI | RGATCY | 2 cut(s) | 759, 1104 |
| PvuII | CAGCTG | 1 cut(s) | 2044 |
| RsaI | GTAC | 6 cut(s) | 882, 1040, 1146, 1316, 2111, 2269 |
| RsaNI | GTAC | 6 cut(s) | 881, 1039, 1145, 1315, 2110, 2268 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1422, 1613 |
| SacI | GAGCTC | 3 cut(s) | 263, 465, 1880 |
| SapI | GCTCTTC | 1 cut(s) | 453 |
| SaqAI | TTAA | 4 cut(s) | 326, 831, 1080, 1137 |
| Sau3AI | GATC | 6 cut(s) | 66, 678, 759, 1104, 1204, 1290 |
| SchI | GAGTC | 8 cut(s) | 153, 542, 1210, 1637, 1763, 2021, 2114, 2328 |
| SduI | GDGCHC | 8 cut(s) | 88, 263, 465, 708, 750, 1376, 1687, 1880 |
| SfaNI | GCATC | 5 cut(s) | 24, 1654, 2214, 2228, 2362 |
| SfcI | CTRYAG | 4 cut(s) | 884, 1619, 1900, 2186 |
| SfoI | GGCGCC | 3 cut(s) | 1572, 2020, 2389 |
| SinI | GGWCC | 5 cut(s) | 169, 863, 1050, 1279, 1351 |
| SmaI | CCCGGG | 1 cut(s) | 1513 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1422, 1613 |
| SmlI | CTYRAG | 1 cut(s) | 1879 |
| SmoI | CTYRAG | 1 cut(s) | 1879 |
| SpeI | ACTAGT | 1 cut(s) | 269 |
| Sse9I | AATT | 3 cut(s) | 188, 1077, 1297 |
| SseBI | AGGCCT | 1 cut(s) | 1591 |
| SspDI | GGCGCC | 3 cut(s) | 1570, 2018, 2387 |
| SspMI | CTAG | 3 cut(s) | 158, 270, 426 |
| SstI | GAGCTC | 3 cut(s) | 263, 465, 1880 |
| StuI | AGGCCT | 1 cut(s) | 1591 |
| StyI | CCWWGG | 5 cut(s) | 952, 1275, 1722, 1980, 2166 |
| TaaI | ACNGT | 5 cut(s) | 661, 871, 1283, 1345, 1805 |
| TaiI | ACGT | 2 cut(s) | 1020, 1073 |
| TaqI | TCGA | 8 cut(s) | 9, 351, 393, 677, 1268, 1293, 2205, 2222 |
| TaqII | GACCGA | 3 cut(s) | 880, 1368, 2159 |
| TasI | AATT | 3 cut(s) | 188, 1077, 1297 |
| TatI | WGTACW | 1 cut(s) | 1144 |
| TfiI | GAWTC | 2 cut(s) | 334, 986 |
| Tru1I | TTAA | 4 cut(s) | 326, 831, 1080, 1137 |
| Tru9I | TTAA | 4 cut(s) | 326, 831, 1080, 1137 |
| TscAI | CASTG | 5 cut(s) | 243, 1159, 1350, 1536, 2371 |
| TseFI | GTSAC | 7 cut(s) | 364, 406, 730, 1256, 1427, 1549, 1760 |
| Tsp45I | GTSAC | 7 cut(s) | 364, 406, 730, 1256, 1427, 1549, 1760 |
| TspGWI | ACGGA | 5 cut(s) | 182, 228, 267, 401, 1040 |
| TspMI | CCCGGG | 1 cut(s) | 1511 |
| TspRI | CASTG | 5 cut(s) | 243, 1159, 1350, 1536, 2371 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 810, 2208 |
| VneI | GTGCAC | 1 cut(s) | 704 |
| VpaK11BI | GGWCC | 5 cut(s) | 169, 863, 1050, 1279, 1351 |
| XceI | RCATGY | 2 cut(s) | 811, 1955 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1418, 1561, 2173 |
| XmaI | CCCGGG | 1 cut(s) | 1511 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2001 |
| XspI | CTAG | 3 cut(s) | 158, 270, 426 |