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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1288 |
| Acc36I | ACCTGC | 1 cut(s) | 370 |
| AccB1I | GGYRCC | 3 cut(s) | 490, 1151, 1244 |
| AccBSI | CCGCTC | 5 cut(s) | 553, 793, 859, 922, 1251 |
| AccII | CGCG | 4 cut(s) | 9, 11, 613, 1043 |
| AclWI | GGATC | 1 cut(s) | 12 |
| AcoI | YGGCCR | 4 cut(s) | 801, 849, 1044, 1194 |
| AcuI | CTGAAG | 3 cut(s) | 625, 1047, 1160 |
| AcyI | GRCGYC | 4 cut(s) | 491, 695, 828, 1152 |
| AfaI | GTAC | 3 cut(s) | 41, 1036, 1204 |
| AfeI | AGCGCT | 1 cut(s) | 211 |
| AflIII | ACRYGT | 2 cut(s) | 681, 880 |
| AgsI | TTSAA | 2 cut(s) | 1058, 1066 |
| AjiI | CACGTC | 2 cut(s) | 415, 883 |
| AjnI | CCWGG | 2 cut(s) | 708, 996 |
| AluBI | AGCT | 4 cut(s) | 218, 508, 724, 841 |
| AluI | AGCT | 4 cut(s) | 218, 508, 724, 841 |
| Alw21I | GWGCWC | 1 cut(s) | 726 |
| Alw26I | GTCTC | 5 cut(s) | 26, 77, 284, 749, 889 |
| AlwI | GGATC | 1 cut(s) | 12 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 709 |
| Ama87I | CYCGRG | 1 cut(s) | 80 |
| Aor51HI | AGCGCT | 1 cut(s) | 211 |
| ApaI | GGGCCC | 3 cut(s) | 184, 433, 1120 |
| ApeKI | GCWGC | 9 cut(s) | 121, 212, 215, 223, 280, 703, 913, 958, 1257 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 24 |
| AspA2I | CCTAGG | 1 cut(s) | 598 |
| AspLEI | GCGC | 9 cut(s) | 11, 212, 361, 493, 615, 996, 1154, 1189, 1274 |
| AsuC2I | CCSGG | 1 cut(s) | 346 |
| AsuHPI | GGTGA | 7 cut(s) | 85, 161, 334, 433, 560, 1000, 1016 |
| AvaI | CYCGRG | 1 cut(s) | 80 |
| AvaII | GGWCC | 2 cut(s) | 336, 1290 |
| AvrII | CCTAGG | 1 cut(s) | 598 |
| AxyI | CCTNAGG | 1 cut(s) | 1019 |
| BaeGI | GKGCMC | 4 cut(s) | 184, 433, 1120, 1249 |
| BalI | TGGCCA | 2 cut(s) | 803, 851 |
| BanI | GGYRCC | 3 cut(s) | 490, 1151, 1244 |
| BanII | GRGCYC | 4 cut(s) | 184, 433, 726, 1120 |
| BbsI | GAAGAC | 1 cut(s) | 71 |
| Bbv12I | GWGCWC | 1 cut(s) | 726 |
| BbvI | GCAGC | 9 cut(s) | 108, 199, 227, 235, 292, 715, 900, 970, 1269 |
| BccI | CCATC | 6 cut(s) | 149, 150, 539, 576, 860, 1163 |
| BceAI | ACGGC | 3 cut(s) | 445, 596, 636 |
| BciT130I | CCWGG | 2 cut(s) | 710, 998 |
| BcnI | CCSGG | 1 cut(s) | 346 |
| BcoDI | GTCTC | 5 cut(s) | 26, 77, 284, 749, 889 |
| BfaI | CTAG | 2 cut(s) | 584, 599 |
| BfmI | CTRYAG | 2 cut(s) | 213, 914 |
| BfoI | RGCGCY | 5 cut(s) | 213, 362, 494, 997, 1155 |
| BfuAI | ACCTGC | 1 cut(s) | 370 |
| BlnI | CCTAGG | 1 cut(s) | 598 |
| BlpI | GCTNAGC | 1 cut(s) | 95 |
| BmcAI | AGTACT | 1 cut(s) | 1036 |
| Bme1390I | CCNGG | 3 cut(s) | 346, 710, 998 |
| Bme18I | GGWCC | 2 cut(s) | 336, 1290 |
| BmeT110I | CYCGRG | 1 cut(s) | 80 |
| BmgBI | CACGTC | 2 cut(s) | 415, 883 |
| BmrFI | CCNGG | 3 cut(s) | 346, 710, 998 |
| BmrI | ACTGGG | 1 cut(s) | 1288 |
| BmsI | GCATC | 2 cut(s) | 228, 1174 |
| BmuI | ACTGGG | 1 cut(s) | 1288 |
| BpiI | GAAGAC | 1 cut(s) | 71 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 497, 529 |
| BpmI | CTGGAG | 4 cut(s) | 50, 383, 731, 1019 |
| Bpu10I | CCTNAGC | 2 cut(s) | 725, 1252 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 95 |
| BpuMI | CCSGG | 1 cut(s) | 346 |
| BsaHI | GRCGYC | 4 cut(s) | 491, 695, 828, 1152 |
| BsaI | GGTCTC | 2 cut(s) | 26, 749 |
| BsaWI | WCCGGW | 1 cut(s) | 112 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 23, 53 |
| Bse118I | RCCGGY | 5 cut(s) | 163, 283, 319, 435, 1192 |
| Bse1I | ACTGG | 4 cut(s) | 93, 100, 783, 1294 |
| Bse21I | CCTNAGG | 1 cut(s) | 1019 |
| BseBI | CCWGG | 2 cut(s) | 710, 998 |
| BseGI | GGATG | 3 cut(s) | 160, 243, 1276 |
| BseMII | CTCAG | 5 cut(s) | 86, 739, 975, 1010, 1266 |
| BseNI | ACTGG | 4 cut(s) | 93, 100, 783, 1294 |
| BseRI | GAGGAG | 1 cut(s) | 326 |
| BseSI | GKGCMC | 4 cut(s) | 184, 433, 1120, 1249 |
| BseX3I | CGGCCG | 1 cut(s) | 1044 |
| BseXI | GCAGC | 9 cut(s) | 108, 199, 227, 235, 292, 715, 900, 970, 1269 |
| BseYI | CCCAGC | 2 cut(s) | 218, 1112 |
| BsgI | GTGCAG | 4 cut(s) | 191, 299, 659, 977 |
| Bsh1236I | CGCG | 4 cut(s) | 9, 11, 613, 1043 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1047 |
| BshNI | GGYRCC | 3 cut(s) | 490, 1151, 1244 |
| BsiEI | CGRYCG | 1 cut(s) | 1047 |
| BsiHKAI | GWGCWC | 1 cut(s) | 726 |
| BsiHKCI | CYCGRG | 1 cut(s) | 80 |
| BsiSI | CCGG | 8 cut(s) | 113, 164, 284, 320, 345, 436, 1193, 1211 |
| BslFI | GGGAC | 3 cut(s) | 684, 875, 1276 |
| BsmAI | GTCTC | 5 cut(s) | 26, 77, 284, 749, 889 |
| BsmBI | CGTCTC | 1 cut(s) | 889 |
| BsmFI | GGGAC | 3 cut(s) | 684, 875, 1276 |
| BsmI | GAATGC | 1 cut(s) | 1061 |
| Bso31I | GGTCTC | 2 cut(s) | 26, 749 |
| BsoBI | CYCGRG | 1 cut(s) | 80 |
| Bsp120I | GGGCCC | 3 cut(s) | 180, 429, 1116 |
| Bsp1286I | GDGCHC | 5 cut(s) | 184, 433, 726, 1120, 1249 |
| Bsp143I | GATC | 2 cut(s) | 4, 423 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 95 |
| BspCNI | CTCAG | 5 cut(s) | 87, 738, 976, 1011, 1265 |
| BspFNI | CGCG | 4 cut(s) | 9, 11, 613, 1043 |
| BspHI | TCATGA | 1 cut(s) | 537 |
| BspMAI | CTGCAG | 2 cut(s) | 217, 918 |
| BspMI | ACCTGC | 1 cut(s) | 370 |
| BspPI | GGATC | 1 cut(s) | 12 |
| BspT107I | GGYRCC | 3 cut(s) | 490, 1151, 1244 |
| BspTNI | GGTCTC | 2 cut(s) | 26, 749 |
| BsrBI | CCGCTC | 5 cut(s) | 553, 793, 859, 922, 1251 |
| BsrFI | RCCGGY | 5 cut(s) | 163, 283, 319, 435, 1192 |
| BsrI | ACTGG | 4 cut(s) | 93, 100, 783, 1294 |
| BssAI | RCCGGY | 5 cut(s) | 163, 283, 319, 435, 1192 |
| BssMI | GATC | 2 cut(s) | 4, 423 |
| BssNI | GRCGYC | 4 cut(s) | 491, 695, 828, 1152 |
| BssT1I | CCWWGG | 5 cut(s) | 305, 598, 739, 804, 933 |
| Bst2UI | CCWGG | 2 cut(s) | 710, 998 |
| Bst4CI | ACNGT | 3 cut(s) | 295, 472, 499 |
| Bst6I | CTCTTC | 2 cut(s) | 396, 569 |
| BstACI | GRCGYC | 4 cut(s) | 491, 695, 828, 1152 |
| BstDEI | CTNAG | 5 cut(s) | 95, 725, 984, 1019, 1252 |
| BstDSI | CCRYGG | 2 cut(s) | 618, 1041 |
| BstEII | GGTNACC | 1 cut(s) | 1009 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 713, 914 |
| BstF5I | GGATG | 3 cut(s) | 160, 243, 1276 |
| BstFNI | CGCG | 4 cut(s) | 9, 11, 613, 1043 |
| BstH2I | RGCGCY | 5 cut(s) | 213, 362, 494, 997, 1155 |
| BstHHI | GCGC | 9 cut(s) | 11, 212, 361, 493, 615, 996, 1154, 1189, 1274 |
| BstKTI | GATC | 2 cut(s) | 7, 426 |
| BstMAI | GTCTC | 5 cut(s) | 26, 77, 284, 749, 889 |
| BstMBI | GATC | 2 cut(s) | 4, 423 |
| BstMCI | CGRYCG | 1 cut(s) | 1047 |
| BstNI | CCWGG | 2 cut(s) | 710, 998 |
| BstNSI | RCATGY | 2 cut(s) | 685, 1138 |
| BstPI | GGTNACC | 1 cut(s) | 1009 |
| BstSCI | CCNGG | 3 cut(s) | 344, 708, 996 |
| BstSFI | CTRYAG | 2 cut(s) | 213, 914 |
| BstSLI | GKGCMC | 4 cut(s) | 184, 433, 1120, 1249 |
| BstUI | CGCG | 4 cut(s) | 9, 11, 613, 1043 |
| BstV1I | GCAGC | 9 cut(s) | 108, 199, 227, 235, 292, 715, 900, 970, 1269 |
| BstV2I | GAAGAC | 1 cut(s) | 71 |
| BstZI | CGGCCG | 1 cut(s) | 1044 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1019 |
| BtgI | CCRYGG | 2 cut(s) | 618, 1041 |
| BtgZI | GCGATG | 1 cut(s) | 1106 |
| BtrI | CACGTC | 2 cut(s) | 415, 883 |
| BtsCI | GGATG | 3 cut(s) | 160, 243, 1276 |
| BtsIMutI | CAGTG | 1 cut(s) | 86 |
| BveI | ACCTGC | 1 cut(s) | 370 |
| CaiI | CAGNNNCTG | 1 cut(s) | 709 |
| CciI | TCATGA | 1 cut(s) | 537 |
| CciNI | GCGGCCGC | 1 cut(s) | 1044 |
| CfoI | GCGC | 9 cut(s) | 11, 212, 361, 493, 615, 996, 1154, 1189, 1274 |
| Cfr10I | RCCGGY | 5 cut(s) | 163, 283, 319, 435, 1192 |
| Cfr42I | CCGCGG | 1 cut(s) | 1044 |
| CseI | GACGC | 4 cut(s) | 76, 684, 836, 1161 |
| Csp6I | GTAC | 3 cut(s) | 40, 1035, 1203 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 235, 270, 607, 642 |
| CviAII | CATG | 4 cut(s) | 37, 538, 682, 1135 |
| CviQI | GTAC | 3 cut(s) | 40, 1035, 1203 |
| DdeI | CTNAG | 5 cut(s) | 95, 725, 984, 1019, 1252 |
| DinI | GGCGCC | 2 cut(s) | 492, 1153 |
| DpnI | GATC | 2 cut(s) | 6, 425 |
| DpnII | GATC | 2 cut(s) | 4, 423 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1288 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1288 |
| EaeI | YGGCCR | 4 cut(s) | 801, 849, 1044, 1194 |
| EagI | CGGCCG | 1 cut(s) | 1044 |
| Eam1104I | CTCTTC | 2 cut(s) | 396, 569 |
| EarI | CTCTTC | 2 cut(s) | 396, 569 |
| EciI | GGCGGA | 5 cut(s) | 302, 776, 797, 824, 1091 |
| Ecl136II | GAGCTC | 1 cut(s) | 724 |
| EclXI | CGGCCG | 1 cut(s) | 1044 |
| Eco130I | CCWWGG | 5 cut(s) | 305, 598, 739, 804, 933 |
| Eco24I | GRGCYC | 4 cut(s) | 184, 433, 726, 1120 |
| Eco31I | GGTCTC | 2 cut(s) | 26, 749 |
| Eco47I | GGWCC | 2 cut(s) | 336, 1290 |
| Eco47III | AGCGCT | 1 cut(s) | 211 |
| Eco52I | CGGCCG | 1 cut(s) | 1044 |
| Eco53kI | GAGCTC | 1 cut(s) | 724 |
| Eco57I | CTGAAG | 3 cut(s) | 625, 1047, 1160 |
| Eco81I | CCTNAGG | 1 cut(s) | 1019 |
| Eco88I | CYCGRG | 1 cut(s) | 80 |
| Eco91I | GGTNACC | 1 cut(s) | 1009 |
| EcoICRI | GAGCTC | 1 cut(s) | 724 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 713, 914 |
| EcoO109I | RGGNCCY | 4 cut(s) | 180, 429, 1116, 1290 |
| EcoO65I | GGTNACC | 1 cut(s) | 1009 |
| EcoRII | CCWGG | 2 cut(s) | 708, 996 |
| EcoT14I | CCWWGG | 5 cut(s) | 305, 598, 739, 804, 933 |
| EcoT38I | GRGCYC | 4 cut(s) | 184, 433, 726, 1120 |
| EgeI | GGCGCC | 2 cut(s) | 492, 1153 |
| EheI | GGCGCC | 2 cut(s) | 492, 1153 |
| ErhI | CCWWGG | 5 cut(s) | 305, 598, 739, 804, 933 |
| Esp3I | CGTCTC | 1 cut(s) | 889 |
| FaeI | CATG | 4 cut(s) | 40, 541, 685, 1138 |
| FaiI | YATR | 8 cut(s) | 38, 528, 539, 574, 683, 822, 1130, 1136 |
| FaqI | GGGAC | 3 cut(s) | 684, 875, 1276 |
| FatI | CATG | 4 cut(s) | 36, 537, 681, 1134 |
| FokI | GGATG | 3 cut(s) | 167, 250, 1263 |
| FriOI | GRGCYC | 4 cut(s) | 184, 433, 726, 1120 |
| FspBI | CTAG | 2 cut(s) | 584, 599 |
| GlaI | GCGC | 9 cut(s) | 10, 211, 360, 492, 614, 995, 1153, 1188, 1273 |
| GsaI | CCCAGC | 2 cut(s) | 222, 1116 |
| GsuI | CTGGAG | 4 cut(s) | 50, 383, 731, 1019 |
| HaeII | RGCGCY | 5 cut(s) | 213, 362, 494, 997, 1155 |
| HapII | CCGG | 8 cut(s) | 113, 164, 284, 320, 345, 436, 1193, 1211 |
| HgaI | GACGC | 4 cut(s) | 76, 684, 836, 1161 |
| HhaI | GCGC | 9 cut(s) | 11, 212, 361, 493, 615, 996, 1154, 1189, 1274 |
| Hin1I | GRCGYC | 4 cut(s) | 491, 695, 828, 1152 |
| Hin1II | CATG | 4 cut(s) | 40, 541, 685, 1138 |
| Hin6I | GCGC | 9 cut(s) | 9, 210, 359, 491, 613, 994, 1152, 1187, 1272 |
| HinP1I | GCGC | 9 cut(s) | 9, 210, 359, 491, 613, 994, 1152, 1187, 1272 |
| HincII | GTYRAC | 2 cut(s) | 247, 385 |
| HindII | GTYRAC | 2 cut(s) | 247, 385 |
| HinfI | GANTC | 4 cut(s) | 386, 512, 965, 1100 |
| HpaII | CCGG | 8 cut(s) | 113, 164, 284, 320, 345, 436, 1193, 1211 |
| HphI | GGTGA | 7 cut(s) | 85, 161, 334, 433, 560, 1000, 1016 |
| Hpy166II | GTNNAC | 4 cut(s) | 76, 247, 385, 969 |
| Hpy188I | TCNGA | 2 cut(s) | 106, 1281 |
| Hpy188III | TCNNGA | 4 cut(s) | 29, 392, 538, 748 |
| Hpy8I | GTNNAC | 4 cut(s) | 76, 247, 385, 969 |
| Hpy99I | CGWCG | 4 cut(s) | 378, 466, 830, 1285 |
| HpyAV | CCTTC | 8 cut(s) | 223, 439, 649, 1022, 1081, 1102, 1141, 1280 |
| HpyCH4III | ACNGT | 3 cut(s) | 295, 472, 499 |
| HpyCH4IV | ACGT | 4 cut(s) | 373, 414, 846, 882 |
| HpyCH4V | TGCA | 6 cut(s) | 172, 215, 280, 676, 916, 958 |
| HpyF3I | CTNAG | 5 cut(s) | 95, 725, 984, 1019, 1252 |
| HpySE526I | ACGT | 4 cut(s) | 373, 414, 846, 882 |
| Hsp92I | GRCGYC | 4 cut(s) | 491, 695, 828, 1152 |
| Hsp92II | CATG | 4 cut(s) | 40, 541, 685, 1138 |
| HspAI | GCGC | 9 cut(s) | 9, 210, 359, 491, 613, 994, 1152, 1187, 1272 |
| KasI | GGCGCC | 2 cut(s) | 490, 1151 |
| KflI | GGGWCCC | 1 cut(s) | 1290 |
| KroI | GCCGGC | 3 cut(s) | 283, 435, 1192 |
| KroNI | GCCGGC | 3 cut(s) | 285, 437, 1194 |
| KspI | CCGCGG | 1 cut(s) | 1044 |
| Kzo9I | GATC | 2 cut(s) | 4, 423 |
| LmnI | GCTCC | 3 cut(s) | 313, 721, 919 |
| Lsp1109I | GCAGC | 9 cut(s) | 108, 199, 227, 235, 292, 715, 900, 970, 1269 |
| LweI | GCATC | 2 cut(s) | 228, 1174 |
| MaeI | CTAG | 2 cut(s) | 584, 599 |
| MaeII | ACGT | 4 cut(s) | 373, 414, 846, 882 |
| MaeIII | GTNAC | 3 cut(s) | 815, 1009, 1173 |
| MalI | GATC | 2 cut(s) | 6, 425 |
| MbiI | CCGCTC | 5 cut(s) | 553, 793, 859, 922, 1251 |
| MboI | GATC | 2 cut(s) | 4, 423 |
| MboII | GAAGA | 4 cut(s) | 76, 413, 454, 556 |
| MfeI | CAATTG | 1 cut(s) | 624 |
| MhlI | GDGCHC | 5 cut(s) | 184, 433, 726, 1120, 1249 |
| MlsI | TGGCCA | 2 cut(s) | 803, 851 |
| MluCI | AATT | 1 cut(s) | 624 |
| MluNI | TGGCCA | 2 cut(s) | 803, 851 |
| Mly113I | GGCGCC | 2 cut(s) | 491, 1152 |
| MlyI | GAGTC | 4 cut(s) | 380, 506, 974, 1109 |
| Mox20I | TGGCCA | 2 cut(s) | 803, 851 |
| MroNI | GCCGGC | 3 cut(s) | 283, 435, 1192 |
| MroXI | GAANNNNTTC | 1 cut(s) | 24 |
| MscI | TGGCCA | 2 cut(s) | 803, 851 |
| MseI | TTAA | 1 cut(s) | 1083 |
| MslI | CAYNNNNRTG | 4 cut(s) | 147, 686, 953, 1133 |
| Msp20I | TGGCCA | 2 cut(s) | 803, 851 |
| MspA1I | CMGCKG | 7 cut(s) | 218, 668, 834, 961, 1043, 1052, 1260 |
| MspI | CCGG | 8 cut(s) | 113, 164, 284, 320, 345, 436, 1193, 1211 |
| MspR9I | CCNGG | 3 cut(s) | 346, 710, 998 |
| MunI | CAATTG | 1 cut(s) | 624 |
| Mva1269I | GAATGC | 1 cut(s) | 1061 |
| MvaI | CCWGG | 2 cut(s) | 710, 998 |
| MvnI | CGCG | 4 cut(s) | 9, 11, 613, 1043 |
| NaeI | GCCGGC | 3 cut(s) | 285, 437, 1194 |
| NarI | GGCGCC | 2 cut(s) | 491, 1152 |
| NciI | CCSGG | 1 cut(s) | 346 |
| NdeII | GATC | 2 cut(s) | 4, 423 |
| NgoMIV | GCCGGC | 3 cut(s) | 283, 435, 1192 |
| NlaIII | CATG | 4 cut(s) | 40, 541, 685, 1138 |
| NmeAIII | GCCGAG | 3 cut(s) | 70, 547, 1214 |
| NmuCI | GTSAC | 2 cut(s) | 815, 1173 |
| NotI | GCGGCCGC | 1 cut(s) | 1044 |
| NspI | RCATGY | 2 cut(s) | 685, 1138 |
| PagI | TCATGA | 1 cut(s) | 537 |
| PciI | ACATGT | 1 cut(s) | 681 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 684, 852 |
| PctI | GAATGC | 1 cut(s) | 1061 |
| PdiI | GCCGGC | 3 cut(s) | 285, 437, 1194 |
| PdmI | GAANNNNTTC | 1 cut(s) | 24 |
| PflFI | GACNNNGTC | 1 cut(s) | 1099 |
| PleI | GAGTC | 4 cut(s) | 380, 506, 973, 1108 |
| PluTI | GGCGCC | 2 cut(s) | 494, 1155 |
| PpsI | GAGTC | 4 cut(s) | 380, 506, 973, 1108 |
| PpuMI | RGGWCCY | 1 cut(s) | 1290 |
| PscI | ACATGT | 1 cut(s) | 681 |
| Psp124BI | GAGCTC | 1 cut(s) | 726 |
| Psp5II | RGGWCCY | 1 cut(s) | 1290 |
| Psp6I | CCWGG | 2 cut(s) | 708, 996 |
| PspEI | GGTNACC | 1 cut(s) | 1009 |
| PspFI | CCCAGC | 2 cut(s) | 218, 1112 |
| PspGI | CCWGG | 2 cut(s) | 708, 996 |
| PspOMI | GGGCCC | 3 cut(s) | 180, 429, 1116 |
| PspPPI | RGGWCCY | 1 cut(s) | 1290 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 518, 550 |
| PstI | CTGCAG | 2 cut(s) | 217, 918 |
| PstNI | CAGNNNCTG | 1 cut(s) | 709 |
| PsyI | GACNNNGTC | 1 cut(s) | 1099 |
| PvuII | CAGCTG | 1 cut(s) | 218 |
| RsaI | GTAC | 3 cut(s) | 41, 1036, 1204 |
| RsaNI | GTAC | 3 cut(s) | 40, 1035, 1203 |
| RseI | CAYNNNNRTG | 4 cut(s) | 147, 686, 953, 1133 |
| SacI | GAGCTC | 1 cut(s) | 726 |
| SacII | CCGCGG | 1 cut(s) | 1044 |
| SaqAI | TTAA | 1 cut(s) | 1083 |
| Sau3AI | GATC | 2 cut(s) | 4, 423 |
| ScaI | AGTACT | 1 cut(s) | 1036 |
| SchI | GAGTC | 4 cut(s) | 380, 506, 974, 1109 |
| ScrFI | CCNGG | 3 cut(s) | 346, 710, 998 |
| SduI | GDGCHC | 5 cut(s) | 184, 433, 726, 1120, 1249 |
| SfaNI | GCATC | 2 cut(s) | 228, 1174 |
| SfcI | CTRYAG | 2 cut(s) | 213, 914 |
| SfoI | GGCGCC | 2 cut(s) | 492, 1153 |
| Sfr303I | CCGCGG | 1 cut(s) | 1044 |
| SgrAI | CRCCGGYG | 1 cut(s) | 319 |
| SgrBI | CCGCGG | 1 cut(s) | 1044 |
| SinI | GGWCC | 2 cut(s) | 336, 1290 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 147, 686, 953, 1133 |
| Sse9I | AATT | 1 cut(s) | 624 |
| SspDI | GGCGCC | 2 cut(s) | 490, 1151 |
| SspMI | CTAG | 2 cut(s) | 584, 599 |
| SstI | GAGCTC | 1 cut(s) | 726 |
| StyD4I | CCNGG | 3 cut(s) | 344, 708, 996 |
| StyI | CCWWGG | 5 cut(s) | 305, 598, 739, 804, 933 |
| TaaI | ACNGT | 3 cut(s) | 295, 472, 499 |
| TaiI | ACGT | 4 cut(s) | 376, 417, 849, 885 |
| TaqI | TCGA | 4 cut(s) | 464, 714, 855, 1158 |
| TaqII | GACCGA | 1 cut(s) | 1112 |
| TasI | AATT | 1 cut(s) | 624 |
| TatI | WGTACW | 1 cut(s) | 1034 |
| Tru1I | TTAA | 1 cut(s) | 1083 |
| Tru9I | TTAA | 1 cut(s) | 1083 |
| TscAI | CASTG | 1 cut(s) | 93 |
| TseFI | GTSAC | 2 cut(s) | 815, 1173 |
| TseI | GCWGC | 9 cut(s) | 121, 212, 215, 223, 280, 703, 913, 958, 1257 |
| Tsp45I | GTSAC | 2 cut(s) | 815, 1173 |
| TspDTI | ATGAA | 2 cut(s) | 526, 891 |
| TspGWI | ACGGA | 2 cut(s) | 250, 1298 |
| TspRI | CASTG | 1 cut(s) | 93 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1099 |
| VpaK11BI | GGWCC | 2 cut(s) | 336, 1290 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 713, 914 |
| XceI | RCATGY | 2 cut(s) | 685, 1138 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 143 |
| XmaJI | CCTAGG | 1 cut(s) | 598 |
| XmnI | GAANNNNTTC | 1 cut(s) | 24 |
| XspI | CTAG | 2 cut(s) | 584, 599 |
| ZrmI | AGTACT | 1 cut(s) | 1036 |