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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 275, 427 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 285 |
| AccII | CGCG | 2 cut(s) | 57, 200 |
| AcoI | YGGCCR | 1 cut(s) | 323 |
| AcuI | CTGAAG | 2 cut(s) | 102, 284 |
| AcyI | GRCGYC | 2 cut(s) | 276, 296 |
| AfaI | GTAC | 1 cut(s) | 313 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 285 |
| AluBI | AGCT | 4 cut(s) | 64, 112, 259, 304 |
| AluI | AGCT | 4 cut(s) | 64, 112, 259, 304 |
| Alw26I | GTCTC | 1 cut(s) | 303 |
| AoxI | GGCC | 3 cut(s) | 102, 135, 323 |
| ApeKI | GCWGC | 6 cut(s) | 112, 170, 173, 242, 245, 259 |
| AspLEI | GCGC | 2 cut(s) | 278, 372 |
| AspS9I | GGNCC | 2 cut(s) | 136, 420 |
| AsuC2I | CCSGG | 1 cut(s) | 425 |
| AvaII | GGWCC | 1 cut(s) | 420 |
| BaeGI | GKGCMC | 1 cut(s) | 432 |
| BanI | GGYRCC | 2 cut(s) | 275, 427 |
| BbvCI | CCTCAGC | 2 cut(s) | 129, 414 |
| BbvI | GCAGC | 6 cut(s) | 99, 157, 160, 229, 232, 246 |
| BccI | CCATC | 2 cut(s) | 86, 214 |
| BcnI | CCSGG | 1 cut(s) | 425 |
| BcoDI | GTCTC | 1 cut(s) | 303 |
| BfaI | CTAG | 2 cut(s) | 375, 401 |
| BfmI | CTRYAG | 1 cut(s) | 177 |
| BfoI | RGCGCY | 1 cut(s) | 279 |
| BisI | GCNGC | 9 cut(s) | 58, 97, 113, 171, 174, 243, 246, 260, 326 |
| BlsI | GCNGC | 9 cut(s) | 59, 98, 114, 172, 175, 244, 247, 261, 327 |
| Bme1390I | CCNGG | 1 cut(s) | 425 |
| Bme18I | GGWCC | 1 cut(s) | 420 |
| BmgT120I | GGNCC | 2 cut(s) | 136, 420 |
| BmiI | GGNNCC | 4 cut(s) | 138, 277, 422, 429 |
| BmrFI | CCNGG | 1 cut(s) | 425 |
| BmrI | ACTGGG | 1 cut(s) | 295 |
| BmsI | GCATC | 2 cut(s) | 31, 40 |
| BmuI | ACTGGG | 1 cut(s) | 295 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 356, 388 |
| Bpu10I | CCTNAGC | 2 cut(s) | 129, 414 |
| BpuMI | CCSGG | 1 cut(s) | 425 |
| BsaHI | GRCGYC | 2 cut(s) | 276, 296 |
| BsaJI | CCNNGG | 6 cut(s) | 27, 45, 55, 105, 198, 423 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 194, 224 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 285 |
| Bse1I | ACTGG | 2 cut(s) | 290, 359 |
| BseDI | CCNNGG | 6 cut(s) | 27, 45, 55, 105, 198, 423 |
| BseGI | GGATG | 3 cut(s) | 55, 347, 412 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 285 |
| BseMII | CTCAG | 6 cut(s) | 120, 134, 141, 156, 314, 428 |
| BseNI | ACTGG | 2 cut(s) | 290, 359 |
| BseSI | GKGCMC | 1 cut(s) | 432 |
| BseX3I | CGGCCG | 1 cut(s) | 323 |
| BseXI | GCAGC | 6 cut(s) | 99, 157, 160, 229, 232, 246 |
| BsgI | GTGCAG | 1 cut(s) | 353 |
| Bsh1236I | CGCG | 2 cut(s) | 57, 200 |
| Bsh1285I | CGRYCG | 1 cut(s) | 326 |
| BshFI | GGCC | 3 cut(s) | 104, 137, 325 |
| BshNI | GGYRCC | 2 cut(s) | 275, 427 |
| BsiEI | CGRYCG | 1 cut(s) | 326 |
| BsiSI | CCGG | 1 cut(s) | 425 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 285 |
| BsmAI | GTCTC | 1 cut(s) | 303 |
| BsmBI | CGTCTC | 1 cut(s) | 303 |
| BsnI | GGCC | 3 cut(s) | 104, 137, 325 |
| Bsp1286I | GDGCHC | 1 cut(s) | 432 |
| Bsp143I | GATC | 1 cut(s) | 157 |
| BspANI | GGCC | 3 cut(s) | 104, 137, 325 |
| BspCNI | CTCAG | 6 cut(s) | 121, 135, 142, 157, 313, 427 |
| BspFNI | CGCG | 2 cut(s) | 57, 200 |
| BspLI | GGNNCC | 4 cut(s) | 138, 277, 422, 429 |
| BspT107I | GGYRCC | 2 cut(s) | 275, 427 |
| BsrI | ACTGG | 2 cut(s) | 290, 359 |
| BssECI | CCNNGG | 6 cut(s) | 27, 45, 55, 105, 198, 423 |
| BssMI | GATC | 1 cut(s) | 157 |
| BssNI | GRCGYC | 2 cut(s) | 276, 296 |
| BssT1I | CCWWGG | 2 cut(s) | 27, 45 |
| BstACI | GRCGYC | 2 cut(s) | 276, 296 |
| BstC8I | GCNNGC | 4 cut(s) | 55, 62, 306, 336 |
| BstDEI | CTNAG | 7 cut(s) | 129, 143, 150, 165, 300, 414, 435 |
| BstDSI | CCRYGG | 3 cut(s) | 55, 105, 198 |
| BstF5I | GGATG | 3 cut(s) | 55, 347, 412 |
| BstFNI | CGCG | 2 cut(s) | 57, 200 |
| BstH2I | RGCGCY | 1 cut(s) | 279 |
| BstHHI | GCGC | 2 cut(s) | 278, 372 |
| BstKTI | GATC | 1 cut(s) | 160 |
| BstMAI | GTCTC | 1 cut(s) | 303 |
| BstMBI | GATC | 1 cut(s) | 157 |
| BstMCI | CGRYCG | 1 cut(s) | 326 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 50, 86, 134, 182, 265, 331, 378 |
| BstSCI | CCNGG | 1 cut(s) | 423 |
| BstSFI | CTRYAG | 1 cut(s) | 177 |
| BstSLI | GKGCMC | 1 cut(s) | 432 |
| BstUI | CGCG | 2 cut(s) | 57, 200 |
| BstV1I | GCAGC | 6 cut(s) | 99, 157, 160, 229, 232, 246 |
| BstZI | CGGCCG | 1 cut(s) | 323 |
| BsuRI | GGCC | 3 cut(s) | 104, 137, 325 |
| BtgI | CCRYGG | 3 cut(s) | 55, 105, 198 |
| BtsCI | GGATG | 3 cut(s) | 55, 347, 412 |
| BtsIMutI | CAGTG | 2 cut(s) | 162, 215 |
| Cac8I | GCNNGC | 4 cut(s) | 55, 62, 306, 336 |
| CfoI | GCGC | 2 cut(s) | 278, 372 |
| Cfr13I | GGNCC | 2 cut(s) | 136, 420 |
| Cfr42I | CCGCGG | 2 cut(s) | 58, 201 |
| CseI | GACGC | 1 cut(s) | 285 |
| Csp6I | GTAC | 1 cut(s) | 312 |
| CviAII | CATG | 2 cut(s) | 217, 395 |
| CviQI | GTAC | 1 cut(s) | 312 |
| DdeI | CTNAG | 7 cut(s) | 129, 143, 150, 165, 300, 414, 435 |
| DinI | GGCGCC | 1 cut(s) | 277 |
| DpnI | GATC | 1 cut(s) | 159 |
| DpnII | GATC | 1 cut(s) | 157 |
| EaeI | YGGCCR | 1 cut(s) | 323 |
| EagI | CGGCCG | 1 cut(s) | 323 |
| EciI | GGCGGA | 1 cut(s) | 47 |
| EclXI | CGGCCG | 1 cut(s) | 323 |
| Eco130I | CCWWGG | 2 cut(s) | 27, 45 |
| Eco47I | GGWCC | 1 cut(s) | 420 |
| Eco52I | CGGCCG | 1 cut(s) | 323 |
| Eco57I | CTGAAG | 2 cut(s) | 102, 284 |
| EcoT14I | CCWWGG | 2 cut(s) | 27, 45 |
| EgeI | GGCGCC | 1 cut(s) | 277 |
| EheI | GGCGCC | 1 cut(s) | 277 |
| ErhI | CCWWGG | 2 cut(s) | 27, 45 |
| Esp3I | CGTCTC | 1 cut(s) | 303 |
| FaeI | CATG | 2 cut(s) | 220, 398 |
| FaiI | YATR | 3 cut(s) | 72, 218, 396 |
| FatI | CATG | 2 cut(s) | 216, 394 |
| FauI | CCCGC | 2 cut(s) | 62, 147 |
| Fnu4HI | GCNGC | 9 cut(s) | 58, 97, 113, 171, 174, 243, 246, 260, 326 |
| FokI | GGATG | 3 cut(s) | 62, 354, 419 |
| Fsp4HI | GCNGC | 9 cut(s) | 58, 97, 113, 171, 174, 243, 246, 260, 326 |
| FspBI | CTAG | 2 cut(s) | 375, 401 |
| GlaI | GCGC | 2 cut(s) | 277, 371 |
| GluI | GCNGC | 9 cut(s) | 58, 97, 113, 171, 174, 243, 246, 260, 326 |
| HaeII | RGCGCY | 1 cut(s) | 279 |
| HaeIII | GGCC | 3 cut(s) | 104, 137, 325 |
| HapII | CCGG | 1 cut(s) | 425 |
| HgaI | GACGC | 1 cut(s) | 285 |
| HhaI | GCGC | 2 cut(s) | 278, 372 |
| Hin1I | GRCGYC | 2 cut(s) | 276, 296 |
| Hin1II | CATG | 2 cut(s) | 220, 398 |
| Hin6I | GCGC | 2 cut(s) | 276, 370 |
| HinP1I | GCGC | 2 cut(s) | 276, 370 |
| HindIII | AAGCTT | 1 cut(s) | 62 |
| HpaII | CCGG | 1 cut(s) | 425 |
| Hpy166II | GTNNAC | 1 cut(s) | 314 |
| Hpy8I | GTNNAC | 1 cut(s) | 314 |
| Hpy99I | CGWCG | 1 cut(s) | 232 |
| HpyAV | CCTTC | 4 cut(s) | 77, 265, 286, 357 |
| HpyCH4V | TGCA | 2 cut(s) | 115, 334 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 50, 86, 134, 182, 265, 331, 378 |
| HpyF3I | CTNAG | 7 cut(s) | 129, 143, 150, 165, 300, 414, 435 |
| Hsp92I | GRCGYC | 2 cut(s) | 276, 296 |
| Hsp92II | CATG | 2 cut(s) | 220, 398 |
| HspAI | GCGC | 2 cut(s) | 276, 370 |
| KasI | GGCGCC | 1 cut(s) | 275 |
| KspI | CCGCGG | 2 cut(s) | 58, 201 |
| Kzo9I | GATC | 1 cut(s) | 157 |
| LmnI | GCTCC | 3 cut(s) | 86, 109, 256 |
| LpnPI | CCDG | 4 cut(s) | 271, 320, 324, 372 |
| Lsp1109I | GCAGC | 6 cut(s) | 99, 157, 160, 229, 232, 246 |
| LweI | GCATC | 2 cut(s) | 31, 40 |
| MaeI | CTAG | 2 cut(s) | 375, 401 |
| MalI | GATC | 1 cut(s) | 159 |
| MboI | GATC | 1 cut(s) | 157 |
| MhlI | GDGCHC | 1 cut(s) | 432 |
| Mly113I | GGCGCC | 1 cut(s) | 276 |
| MmeI | TCCRAC | 1 cut(s) | 102 |
| MnlI | CCTC | 7 cut(s) | 12, 118, 124, 160, 175, 358, 423 |
| MseI | TTAA | 1 cut(s) | 189 |
| MspA1I | CMGCKG | 4 cut(s) | 57, 142, 200, 418 |
| MspI | CCGG | 1 cut(s) | 425 |
| MspR9I | CCNGG | 1 cut(s) | 425 |
| MvnI | CGCG | 2 cut(s) | 57, 200 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 50, 86, 134, 182, 265, 331, 378 |
| NarI | GGCGCC | 1 cut(s) | 276 |
| NciI | CCSGG | 1 cut(s) | 425 |
| NdeII | GATC | 1 cut(s) | 157 |
| NlaIII | CATG | 2 cut(s) | 220, 398 |
| NlaIV | GGNNCC | 4 cut(s) | 138, 277, 422, 429 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 285 |
| PkrI | GCNGC | 9 cut(s) | 59, 98, 114, 172, 175, 244, 247, 261, 327 |
| PluTI | GGCGCC | 1 cut(s) | 279 |
| PspN4I | GGNNCC | 4 cut(s) | 138, 277, 422, 429 |
| PspPI | GGNCC | 2 cut(s) | 136, 420 |
| RsaI | GTAC | 1 cut(s) | 313 |
| RsaNI | GTAC | 1 cut(s) | 312 |
| SacII | CCGCGG | 2 cut(s) | 58, 201 |
| SaqAI | TTAA | 1 cut(s) | 189 |
| SatI | GCNGC | 9 cut(s) | 58, 97, 113, 171, 174, 243, 246, 260, 326 |
| Sau3AI | GATC | 1 cut(s) | 157 |
| Sau96I | GGNCC | 2 cut(s) | 136, 420 |
| ScrFI | CCNGG | 1 cut(s) | 425 |
| SduI | GDGCHC | 1 cut(s) | 432 |
| SetI | ASST | 7 cut(s) | 66, 114, 122, 135, 261, 306, 369 |
| SfaNI | GCATC | 2 cut(s) | 31, 40 |
| SfcI | CTRYAG | 1 cut(s) | 177 |
| SfoI | GGCGCC | 1 cut(s) | 277 |
| Sfr303I | CCGCGG | 2 cut(s) | 58, 201 |
| SgrBI | CCGCGG | 2 cut(s) | 58, 201 |
| SinI | GGWCC | 1 cut(s) | 420 |
| SspDI | GGCGCC | 1 cut(s) | 275 |
| SspMI | CTAG | 2 cut(s) | 375, 401 |
| StyD4I | CCNGG | 1 cut(s) | 423 |
| StyI | CCWWGG | 2 cut(s) | 27, 45 |
| TatI | WGTACW | 1 cut(s) | 311 |
| TauI | GCSGC | 3 cut(s) | 60, 99, 328 |
| Tru1I | TTAA | 1 cut(s) | 189 |
| Tru9I | TTAA | 1 cut(s) | 189 |
| TscAI | CASTG | 2 cut(s) | 169, 215 |
| TseI | GCWGC | 6 cut(s) | 112, 170, 173, 242, 245, 259 |
| TspGWI | ACGGA | 1 cut(s) | 122 |
| TspRI | CASTG | 2 cut(s) | 169, 215 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 285 |
| VpaK11BI | GGWCC | 1 cut(s) | 420 |
| XspI | CTAG | 2 cut(s) | 375, 401 |