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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 544 |
| Acc65I | GGTACC | 1 cut(s) | 629 |
| AccB1I | GGYRCC | 6 cut(s) | 440, 629, 1408, 1710, 2030, 2066 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 159, 2076 |
| AccBSI | CCGCTC | 6 cut(s) | 244, 728, 1468, 1633, 1708, 2147 |
| AccII | CGCG | 7 cut(s) | 187, 900, 1136, 1220, 1415, 1439, 1739 |
| AclI | AACGTT | 1 cut(s) | 1004 |
| AclWI | GGATC | 2 cut(s) | 1842, 1861 |
| AcoI | YGGCCR | 5 cut(s) | 1348, 1764, 1842, 1896, 1959 |
| AcsI | RAATTY | 2 cut(s) | 72, 1472 |
| AcuI | CTGAAG | 1 cut(s) | 948 |
| AcyI | GRCGYC | 3 cut(s) | 1711, 2067, 2087 |
| AfaI | GTAC | 5 cut(s) | 631, 959, 1275, 1442, 2155 |
| AflIII | ACRYGT | 3 cut(s) | 48, 502, 1818 |
| AgsI | TTSAA | 7 cut(s) | 24, 453, 716, 872, 1280, 1558, 2056 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 40, 2169 |
| AjiI | CACGTC | 2 cut(s) | 49, 1780 |
| AjnI | CCWGG | 6 cut(s) | 158, 418, 573, 880, 1422, 1932 |
| AluBI | AGCT | 9 cut(s) | 170, 341, 589, 1373, 1639, 1672, 1756, 1807, 2111 |
| AluI | AGCT | 9 cut(s) | 170, 341, 589, 1373, 1639, 1672, 1756, 1807, 2111 |
| Alw21I | GWGCWC | 2 cut(s) | 403, 1641 |
| Alw26I | GTCTC | 5 cut(s) | 824, 944, 1328, 1664, 1804 |
| Alw44I | GTGCAC | 1 cut(s) | 399 |
| AlwI | GGATC | 2 cut(s) | 1842, 1861 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1100 |
| Ama87I | CYCGRG | 3 cut(s) | 1623, 2142, 2181 |
| ApaLI | GTGCAC | 1 cut(s) | 399 |
| ApoI | RAATTY | 2 cut(s) | 72, 1472 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 302, 334 |
| Asp718I | GGTACC | 1 cut(s) | 629 |
| AspS9I | GGNCC | 6 cut(s) | 672, 922, 1108, 1172, 1344, 2134 |
| AsuC2I | CCSGG | 1 cut(s) | 998 |
| AsuHPI | GGTGA | 4 cut(s) | 347, 1082, 1426, 1915 |
| AvaI | CYCGRG | 3 cut(s) | 1623, 2142, 2181 |
| AvaII | GGWCC | 2 cut(s) | 672, 922 |
| BaeGI | GKGCMC | 3 cut(s) | 403, 1413, 2035 |
| BanI | GGYRCC | 6 cut(s) | 440, 629, 1408, 1710, 2030, 2066 |
| BanII | GRGCYC | 1 cut(s) | 1641 |
| BauI | CACGAG | 2 cut(s) | 402, 861 |
| Bbv12I | GWGCWC | 2 cut(s) | 403, 1641 |
| BccI | CCATC | 5 cut(s) | 1068, 1346, 1491, 2144, 2237 |
| BceAI | ACGGC | 6 cut(s) | 381, 663, 1090, 1145, 1219, 1751 |
| BciT130I | CCWGG | 6 cut(s) | 160, 420, 575, 882, 1424, 1934 |
| BclI | TGATCA | 1 cut(s) | 1792 |
| BcnI | CCSGG | 1 cut(s) | 998 |
| BcoDI | GTCTC | 5 cut(s) | 824, 944, 1328, 1664, 1804 |
| BfaI | CTAG | 6 cut(s) | 131, 201, 971, 1365, 1388, 1514 |
| BfmI | CTRYAG | 2 cut(s) | 1829, 1871 |
| BfoI | RGCGCY | 8 cut(s) | 525, 584, 1013, 1291, 1388, 1714, 2009, 2070 |
| BfuAI | ACCTGC | 1 cut(s) | 544 |
| BlpI | GCTNAGC | 2 cut(s) | 978, 1013 |
| Bme1390I | CCNGG | 7 cut(s) | 160, 420, 575, 882, 998, 1424, 1934 |
| Bme18I | GGWCC | 2 cut(s) | 672, 922 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 40, 2169 |
| BmeT110I | CYCGRG | 3 cut(s) | 1623, 2142, 2181 |
| BmgBI | CACGTC | 2 cut(s) | 49, 1780 |
| BmgT120I | GGNCC | 6 cut(s) | 672, 922, 1108, 1172, 1344, 2134 |
| BmrFI | CCNGG | 7 cut(s) | 160, 420, 575, 882, 998, 1424, 1934 |
| BmrI | ACTGGG | 1 cut(s) | 2163 |
| BmsI | GCATC | 8 cut(s) | 295, 505, 786, 1111, 1723, 1732, 2107, 2227 |
| BmuI | ACTGGG | 1 cut(s) | 2163 |
| BoxI | GACNNNNGTC | 1 cut(s) | 816 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 354, 386 |
| BpmI | CTGGAG | 3 cut(s) | 1646, 1829, 1934 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1640, 2112, 2130 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 978, 1013 |
| BpuEI | CTTGAG | 1 cut(s) | 583 |
| BpuMI | CCSGG | 1 cut(s) | 998 |
| Bsa29I | ATCGAT | 1 cut(s) | 936 |
| BsaHI | GRCGYC | 3 cut(s) | 1711, 2067, 2087 |
| BsaI | GGTCTC | 2 cut(s) | 1328, 1664 |
| BsaWI | WCCGGW | 1 cut(s) | 1500 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 941, 971, 1220, 1250 |
| Bse118I | RCCGGY | 2 cut(s) | 1198, 1346 |
| Bse1I | ACTGG | 6 cut(s) | 267, 626, 832, 1546, 1899, 2169 |
| BseBI | CCWGG | 6 cut(s) | 160, 420, 575, 882, 1424, 1934 |
| BseCI | ATCGAT | 1 cut(s) | 936 |
| BseGI | GGATG | 7 cut(s) | 310, 1126, 1747, 1945, 2122, 2155, 2209 |
| BseMII | CTCAG | 5 cut(s) | 593, 992, 1389, 1654, 2004 |
| BseNI | ACTGG | 6 cut(s) | 267, 626, 832, 1546, 1899, 2169 |
| BseSI | GKGCMC | 3 cut(s) | 403, 1413, 2035 |
| BseX3I | CGGCCG | 1 cut(s) | 1959 |
| BseYI | CCCAGC | 3 cut(s) | 831, 1259, 1672 |
| BsgI | GTGCAG | 2 cut(s) | 126, 1214 |
| Bsh1236I | CGCG | 7 cut(s) | 187, 900, 1136, 1220, 1415, 1439, 1739 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1962 |
| BshNI | GGYRCC | 6 cut(s) | 440, 629, 1408, 1710, 2030, 2066 |
| BshVI | ATCGAT | 1 cut(s) | 936 |
| BsiEI | CGRYCG | 1 cut(s) | 1962 |
| BsiHKAI | GWGCWC | 2 cut(s) | 403, 1641 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1623, 2142, 2181 |
| BsiSI | CCGG | 4 cut(s) | 998, 1199, 1347, 1501 |
| BsiWI | CGTACG | 1 cut(s) | 1440 |
| BslFI | GGGAC | 5 cut(s) | 1337, 1790, 1807, 2157, 2176 |
| BsmAI | GTCTC | 5 cut(s) | 824, 944, 1328, 1664, 1804 |
| BsmBI | CGTCTC | 1 cut(s) | 824 |
| BsmFI | GGGAC | 5 cut(s) | 1337, 1790, 1807, 2157, 2176 |
| BsmI | GAATGC | 2 cut(s) | 1366, 1976 |
| Bso31I | GGTCTC | 2 cut(s) | 1328, 1664 |
| BsoBI | CYCGRG | 3 cut(s) | 1623, 2142, 2181 |
| Bsp1286I | GDGCHC | 4 cut(s) | 403, 1413, 1641, 2035 |
| Bsp143I | GATC | 7 cut(s) | 591, 847, 933, 1650, 1792, 1834, 1866 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 978, 1013 |
| Bsp19I | CCATGG | 1 cut(s) | 918 |
| BspCNI | CTCAG | 5 cut(s) | 594, 991, 1390, 1653, 2005 |
| BspDI | ATCGAT | 1 cut(s) | 936 |
| BspFNI | CGCG | 7 cut(s) | 187, 900, 1136, 1220, 1415, 1439, 1739 |
| BspMAI | CTGCAG | 1 cut(s) | 1875 |
| BspMI | ACCTGC | 1 cut(s) | 544 |
| BspPI | GGATC | 2 cut(s) | 1842, 1861 |
| BspT107I | GGYRCC | 6 cut(s) | 440, 629, 1408, 1710, 2030, 2066 |
| BspTNI | GGTCTC | 2 cut(s) | 1328, 1664 |
| BsrBI | CCGCTC | 6 cut(s) | 244, 728, 1468, 1633, 1708, 2147 |
| BsrFI | RCCGGY | 2 cut(s) | 1198, 1346 |
| BsrI | ACTGG | 6 cut(s) | 267, 626, 832, 1546, 1899, 2169 |
| BssAI | RCCGGY | 2 cut(s) | 1198, 1346 |
| BssMI | GATC | 7 cut(s) | 591, 847, 933, 1650, 1792, 1834, 1866 |
| BssNI | GRCGYC | 3 cut(s) | 1711, 2067, 2087 |
| BssSI | CACGAG | 2 cut(s) | 402, 861 |
| BssT1I | CCWWGG | 5 cut(s) | 918, 1380, 1683, 1719, 1848 |
| Bst2BI | CACGAG | 2 cut(s) | 402, 861 |
| Bst2UI | CCWGG | 6 cut(s) | 160, 420, 575, 882, 1424, 1934 |
| Bst4CI | ACNGT | 7 cut(s) | 260, 356, 926, 988, 1192, 1216, 1463 |
| Bst6I | CTCTTC | 3 cut(s) | 753, 1641, 1901 |
| BstACI | GRCGYC | 3 cut(s) | 1711, 2067, 2087 |
| BstDEI | CTNAG | 9 cut(s) | 602, 978, 1013, 1398, 1614, 1640, 2013, 2112, 2130 |
| BstDSI | CCRYGG | 3 cut(s) | 645, 918, 1737 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1718, 1829 |
| BstF5I | GGATG | 7 cut(s) | 310, 1126, 1747, 1945, 2122, 2155, 2209 |
| BstFNI | CGCG | 7 cut(s) | 187, 900, 1136, 1220, 1415, 1439, 1739 |
| BstH2I | RGCGCY | 8 cut(s) | 525, 584, 1013, 1291, 1388, 1714, 2009, 2070 |
| BstKTI | GATC | 7 cut(s) | 594, 850, 936, 1653, 1795, 1837, 1869 |
| BstMAI | GTCTC | 5 cut(s) | 824, 944, 1328, 1664, 1804 |
| BstMBI | GATC | 7 cut(s) | 591, 847, 933, 1650, 1792, 1834, 1866 |
| BstMCI | CGRYCG | 1 cut(s) | 1962 |
| BstNI | CCWGG | 6 cut(s) | 160, 420, 575, 882, 1424, 1934 |
| BstNSI | RCATGY | 3 cut(s) | 506, 1822, 2225 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 816 |
| BstSCI | CCNGG | 7 cut(s) | 158, 418, 573, 880, 996, 1422, 1932 |
| BstSFI | CTRYAG | 2 cut(s) | 1829, 1871 |
| BstSLI | GKGCMC | 3 cut(s) | 403, 1413, 2035 |
| BstUI | CGCG | 7 cut(s) | 187, 900, 1136, 1220, 1415, 1439, 1739 |
| BstX2I | RGATCY | 1 cut(s) | 1866 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1067 |
| BstYI | RGATCY | 1 cut(s) | 1866 |
| BstZI | CGGCCG | 1 cut(s) | 1959 |
| Bsu15I | ATCGAT | 1 cut(s) | 936 |
| BsuTUI | ATCGAT | 1 cut(s) | 936 |
| BtgI | CCRYGG | 3 cut(s) | 645, 918, 1737 |
| BtrI | CACGTC | 2 cut(s) | 49, 1780 |
| BtsCI | GGATG | 7 cut(s) | 310, 1126, 1747, 1945, 2122, 2155, 2209 |
| BtsI | GCAGTG | 4 cut(s) | 34, 116, 1767, 2175 |
| BtsIMutI | CAGTG | 7 cut(s) | 34, 116, 265, 274, 1468, 1767, 2175 |
| BveI | ACCTGC | 1 cut(s) | 544 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1100 |
| CciNI | GCGGCCGC | 1 cut(s) | 1959 |
| Cfr10I | RCCGGY | 2 cut(s) | 1198, 1346 |
| Cfr13I | GGNCC | 6 cut(s) | 672, 922, 1108, 1172, 1344, 2134 |
| Cfr42I | CCGCGG | 1 cut(s) | 1740 |
| ClaI | ATCGAT | 1 cut(s) | 936 |
| CseI | GACGC | 5 cut(s) | 80, 176, 333, 911, 2076 |
| Csp6I | GTAC | 5 cut(s) | 630, 958, 1274, 1441, 2154 |
| CviAII | CATG | 8 cut(s) | 503, 613, 919, 1045, 1796, 1819, 2092, 2222 |
| CviQI | GTAC | 5 cut(s) | 630, 958, 1274, 1441, 2154 |
| DdeI | CTNAG | 9 cut(s) | 602, 978, 1013, 1398, 1614, 1640, 2013, 2112, 2130 |
| DinI | GGCGCC | 2 cut(s) | 1712, 2068 |
| DpnI | GATC | 7 cut(s) | 593, 849, 935, 1652, 1794, 1836, 1868 |
| DpnII | GATC | 7 cut(s) | 591, 847, 933, 1650, 1792, 1834, 1866 |
| DriI | GACNNNNNGTC | 2 cut(s) | 40, 2169 |
| EaeI | YGGCCR | 5 cut(s) | 1348, 1764, 1842, 1896, 1959 |
| EagI | CGGCCG | 1 cut(s) | 1959 |
| Eam1104I | CTCTTC | 3 cut(s) | 753, 1641, 1901 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 40, 2169 |
| EarI | CTCTTC | 3 cut(s) | 753, 1641, 1901 |
| EciI | GGCGGA | 7 cut(s) | 337, 808, 1365, 1712, 1739, 2006, 2112 |
| Ecl136II | GAGCTC | 1 cut(s) | 1639 |
| EclXI | CGGCCG | 1 cut(s) | 1959 |
| Eco130I | CCWWGG | 5 cut(s) | 918, 1380, 1683, 1719, 1848 |
| Eco147I | AGGCCT | 2 cut(s) | 369, 1252 |
| Eco24I | GRGCYC | 1 cut(s) | 1641 |
| Eco31I | GGTCTC | 2 cut(s) | 1328, 1664 |
| Eco47I | GGWCC | 2 cut(s) | 672, 922 |
| Eco52I | CGGCCG | 1 cut(s) | 1959 |
| Eco53kI | GAGCTC | 1 cut(s) | 1639 |
| Eco57I | CTGAAG | 1 cut(s) | 948 |
| Eco88I | CYCGRG | 3 cut(s) | 1623, 2142, 2181 |
| EcoICRI | GAGCTC | 1 cut(s) | 1639 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1718, 1829 |
| EcoRII | CCWGG | 6 cut(s) | 158, 418, 573, 880, 1422, 1932 |
| EcoT14I | CCWWGG | 5 cut(s) | 918, 1380, 1683, 1719, 1848 |
| EcoT38I | GRGCYC | 1 cut(s) | 1641 |
| EgeI | GGCGCC | 2 cut(s) | 1712, 2068 |
| EheI | GGCGCC | 2 cut(s) | 1712, 2068 |
| ErhI | CCWWGG | 5 cut(s) | 918, 1380, 1683, 1719, 1848 |
| Esp3I | CGTCTC | 1 cut(s) | 824 |
| FaeI | CATG | 8 cut(s) | 506, 616, 922, 1048, 1799, 1822, 2095, 2225 |
| FaqI | GGGAC | 5 cut(s) | 1337, 1790, 1807, 2157, 2176 |
| FatI | CATG | 8 cut(s) | 502, 612, 918, 1044, 1795, 1818, 2091, 2221 |
| FbaI | TGATCA | 1 cut(s) | 1792 |
| FokI | GGATG | 7 cut(s) | 317, 1133, 1754, 1952, 2129, 2162, 2196 |
| FriOI | GRGCYC | 1 cut(s) | 1641 |
| FseI | GGCCGGCC | 1 cut(s) | 1350 |
| FspBI | CTAG | 6 cut(s) | 131, 201, 971, 1365, 1388, 1514 |
| GsaI | CCCAGC | 3 cut(s) | 835, 1263, 1676 |
| GsuI | CTGGAG | 3 cut(s) | 1646, 1829, 1934 |
| HaeII | RGCGCY | 8 cut(s) | 525, 584, 1013, 1291, 1388, 1714, 2009, 2070 |
| HapII | CCGG | 4 cut(s) | 998, 1199, 1347, 1501 |
| HgaI | GACGC | 5 cut(s) | 80, 176, 333, 911, 2076 |
| Hin1I | GRCGYC | 3 cut(s) | 1711, 2067, 2087 |
| Hin1II | CATG | 8 cut(s) | 506, 616, 922, 1048, 1799, 1822, 2095, 2225 |
| HpaII | CCGG | 4 cut(s) | 998, 1199, 1347, 1501 |
| HphI | GGTGA | 4 cut(s) | 347, 1082, 1426, 1915 |
| Hpy166II | GTNNAC | 4 cut(s) | 359, 401, 559, 994 |
| Hpy188I | TCNGA | 6 cut(s) | 46, 548, 709, 725, 782, 1024 |
| Hpy188III | TCNNGA | 4 cut(s) | 191, 595, 863, 1663 |
| Hpy8I | GTNNAC | 4 cut(s) | 359, 401, 559, 994 |
| Hpy99I | CGWCG | 8 cut(s) | 14, 356, 694, 905, 1088, 1220, 1240, 2102 |
| HpyCH4III | ACNGT | 7 cut(s) | 260, 356, 926, 988, 1192, 1216, 1463 |
| HpyCH4IV | ACGT | 7 cut(s) | 9, 48, 316, 692, 867, 1004, 1779 |
| HpyCH4V | TGCA | 5 cut(s) | 107, 401, 1130, 1195, 1873 |
| HpyF3I | CTNAG | 9 cut(s) | 602, 978, 1013, 1398, 1614, 1640, 2013, 2112, 2130 |
| HpySE526I | ACGT | 7 cut(s) | 9, 48, 316, 692, 867, 1004, 1779 |
| Hsp92I | GRCGYC | 3 cut(s) | 1711, 2067, 2087 |
| Hsp92II | CATG | 8 cut(s) | 506, 616, 922, 1048, 1799, 1822, 2095, 2225 |
| KasI | GGCGCC | 2 cut(s) | 1710, 2066 |
| KpnI | GGTACC | 1 cut(s) | 633 |
| KroI | GCCGGC | 2 cut(s) | 1198, 1346 |
| KroNI | GCCGGC | 2 cut(s) | 1200, 1348 |
| Ksp22I | TGATCA | 1 cut(s) | 1792 |
| KspI | CCGCGG | 1 cut(s) | 1740 |
| Kzo9I | GATC | 7 cut(s) | 591, 847, 933, 1650, 1792, 1834, 1866 |
| LmnI | GCTCC | 9 cut(s) | 578, 1228, 1378, 1503, 1533, 1636, 1705, 1810, 2125 |
| LweI | GCATC | 8 cut(s) | 295, 505, 786, 1111, 1723, 1732, 2107, 2227 |
| MaeI | CTAG | 6 cut(s) | 131, 201, 971, 1365, 1388, 1514 |
| MaeII | ACGT | 7 cut(s) | 9, 48, 316, 692, 867, 1004, 1779 |
| MaeIII | GTNAC | 5 cut(s) | 254, 425, 863, 884, 1070 |
| MalI | GATC | 7 cut(s) | 593, 849, 935, 1652, 1794, 1836, 1868 |
| MbiI | CCGCTC | 6 cut(s) | 244, 728, 1468, 1633, 1708, 2147 |
| MboI | GATC | 7 cut(s) | 591, 847, 933, 1650, 1792, 1834, 1866 |
| MboII | GAAGA | 8 cut(s) | 369, 770, 1328, 1369, 1658, 1867, 1870, 1918 |
| MflI | RGATCY | 1 cut(s) | 1866 |
| MhlI | GDGCHC | 4 cut(s) | 403, 1413, 1641, 2035 |
| MluCI | AATT | 3 cut(s) | 72, 940, 1472 |
| Mly113I | GGCGCC | 2 cut(s) | 1711, 2067 |
| MlyI | GAGTC | 8 cut(s) | 29, 77, 574, 742, 853, 1295, 1889, 2158 |
| MmeI | TCCRAC | 4 cut(s) | 687, 699, 789, 1206 |
| MroNI | GCCGGC | 2 cut(s) | 1198, 1346 |
| MseI | TTAA | 3 cut(s) | 702, 912, 1247 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1065 |
| MspA1I | CMGCKG | 9 cut(s) | 65, 384, 437, 1307, 1739, 1774, 1876, 1964, 2215 |
| MspI | CCGG | 4 cut(s) | 998, 1199, 1347, 1501 |
| MspR9I | CCNGG | 7 cut(s) | 160, 420, 575, 882, 998, 1424, 1934 |
| Mva1269I | GAATGC | 2 cut(s) | 1366, 1976 |
| MvaI | CCWGG | 6 cut(s) | 160, 420, 575, 882, 1424, 1934 |
| MvnI | CGCG | 7 cut(s) | 187, 900, 1136, 1220, 1415, 1439, 1739 |
| NaeI | GCCGGC | 2 cut(s) | 1200, 1348 |
| NarI | GGCGCC | 2 cut(s) | 1711, 2067 |
| NciI | CCSGG | 1 cut(s) | 998 |
| NcoI | CCATGG | 1 cut(s) | 918 |
| NdeII | GATC | 7 cut(s) | 591, 847, 933, 1650, 1792, 1834, 1866 |
| NgoMIV | GCCGGC | 2 cut(s) | 1198, 1346 |
| NlaIII | CATG | 8 cut(s) | 506, 616, 922, 1048, 1799, 1822, 2095, 2225 |
| NmeAIII | GCCGAG | 3 cut(s) | 955, 1541, 1924 |
| NmuCI | GTSAC | 3 cut(s) | 425, 863, 1070 |
| NotI | GCGGCCGC | 1 cut(s) | 1959 |
| NspI | RCATGY | 3 cut(s) | 506, 1822, 2225 |
| PaeI | GCATGC | 1 cut(s) | 2225 |
| PaeR7I | CTCGAG | 2 cut(s) | 1623, 2142 |
| PasI | CCCWGGG | 1 cut(s) | 159 |
| PceI | AGGCCT | 2 cut(s) | 369, 1252 |
| PciI | ACATGT | 2 cut(s) | 502, 1818 |
| PcsI | WCGNNNNNNNCGW | 6 cut(s) | 92, 184, 859, 1080, 1288, 1599 |
| PctI | GAATGC | 2 cut(s) | 1366, 1976 |
| PdiI | GCCGGC | 2 cut(s) | 1200, 1348 |
| PfeI | GAWTC | 4 cut(s) | 374, 608, 796, 1427 |
| Pfl23II | CGTACG | 1 cut(s) | 1440 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 159, 2076 |
| PleI | GAGTC | 8 cut(s) | 29, 77, 573, 742, 853, 1295, 1888, 2158 |
| PluTI | GGCGCC | 2 cut(s) | 1714, 2070 |
| PpsI | GAGTC | 8 cut(s) | 29, 77, 573, 742, 853, 1295, 1888, 2158 |
| PscI | ACATGT | 2 cut(s) | 502, 1818 |
| PshAI | GACNNNNGTC | 1 cut(s) | 816 |
| Psp124BI | GAGCTC | 1 cut(s) | 1641 |
| Psp1406I | AACGTT | 1 cut(s) | 1004 |
| Psp6I | CCWGG | 6 cut(s) | 158, 418, 573, 880, 1422, 1932 |
| PspFI | CCCAGC | 3 cut(s) | 831, 1259, 1672 |
| PspGI | CCWGG | 6 cut(s) | 158, 418, 573, 880, 1422, 1932 |
| PspLI | CGTACG | 1 cut(s) | 1440 |
| PspPI | GGNCC | 6 cut(s) | 672, 922, 1108, 1172, 1344, 2134 |
| PspXI | VCTCGAGB | 2 cut(s) | 1623, 2142 |
| PstI | CTGCAG | 1 cut(s) | 1875 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1100 |
| PsuI | RGATCY | 1 cut(s) | 1866 |
| RigI | GGCCGGCC | 1 cut(s) | 1350 |
| RsaI | GTAC | 5 cut(s) | 631, 959, 1275, 1442, 2155 |
| RsaNI | GTAC | 5 cut(s) | 630, 958, 1274, 1441, 2154 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1065 |
| SacI | GAGCTC | 1 cut(s) | 1641 |
| SacII | CCGCGG | 1 cut(s) | 1740 |
| SaqAI | TTAA | 3 cut(s) | 702, 912, 1247 |
| Sau3AI | GATC | 7 cut(s) | 591, 847, 933, 1650, 1792, 1834, 1866 |
| Sau96I | GGNCC | 6 cut(s) | 672, 922, 1108, 1172, 1344, 2134 |
| SchI | GAGTC | 8 cut(s) | 29, 77, 574, 742, 853, 1295, 1889, 2158 |
| ScrFI | CCNGG | 7 cut(s) | 160, 420, 575, 882, 998, 1424, 1934 |
| SduI | GDGCHC | 4 cut(s) | 403, 1413, 1641, 2035 |
| SfaNI | GCATC | 8 cut(s) | 295, 505, 786, 1111, 1723, 1732, 2107, 2227 |
| SfcI | CTRYAG | 2 cut(s) | 1829, 1871 |
| SfoI | GGCGCC | 2 cut(s) | 1712, 2068 |
| Sfr274I | CTCGAG | 2 cut(s) | 1623, 2142 |
| Sfr303I | CCGCGG | 1 cut(s) | 1740 |
| SgrBI | CCGCGG | 1 cut(s) | 1740 |
| SinI | GGWCC | 2 cut(s) | 672, 922 |
| SlaI | CTCGAG | 2 cut(s) | 1623, 2142 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1065 |
| SmlI | CTYRAG | 3 cut(s) | 562, 1623, 2142 |
| SmoI | CTYRAG | 3 cut(s) | 562, 1623, 2142 |
| SphI | GCATGC | 1 cut(s) | 2225 |
| Sse9I | AATT | 3 cut(s) | 72, 940, 1472 |
| SseBI | AGGCCT | 2 cut(s) | 369, 1252 |
| SspDI | GGCGCC | 2 cut(s) | 1710, 2066 |
| SspMI | CTAG | 6 cut(s) | 131, 201, 971, 1365, 1388, 1514 |
| SstI | GAGCTC | 1 cut(s) | 1641 |
| StuI | AGGCCT | 2 cut(s) | 369, 1252 |
| StyD4I | CCNGG | 7 cut(s) | 158, 418, 573, 880, 996, 1422, 1932 |
| StyI | CCWWGG | 5 cut(s) | 918, 1380, 1683, 1719, 1848 |
| TaaI | ACNGT | 7 cut(s) | 260, 356, 926, 988, 1192, 1216, 1463 |
| TaiI | ACGT | 7 cut(s) | 12, 51, 319, 695, 870, 1007, 1782 |
| TaqI | TCGA | 8 cut(s) | 372, 594, 846, 936, 1238, 1624, 1653, 2143 |
| TaqII | GACCGA | 1 cut(s) | 1559 |
| TasI | AATT | 3 cut(s) | 72, 940, 1472 |
| TfiI | GAWTC | 4 cut(s) | 374, 608, 796, 1427 |
| Tru1I | TTAA | 3 cut(s) | 702, 912, 1247 |
| Tru9I | TTAA | 3 cut(s) | 702, 912, 1247 |
| TscAI | CASTG | 7 cut(s) | 34, 123, 265, 274, 1468, 1767, 2182 |
| TseFI | GTSAC | 3 cut(s) | 425, 863, 1070 |
| Tsp45I | GTSAC | 3 cut(s) | 425, 863, 1070 |
| TspDTI | ATGAA | 1 cut(s) | 1419 |
| TspGWI | ACGGA | 4 cut(s) | 84, 327, 1297, 1801 |
| TspRI | CASTG | 7 cut(s) | 34, 123, 265, 274, 1468, 1767, 2182 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 159, 2076 |
| VneI | GTGCAC | 1 cut(s) | 399 |
| VpaK11BI | GGWCC | 2 cut(s) | 672, 922 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1718, 1829 |
| XapI | RAATTY | 2 cut(s) | 72, 1472 |
| XceI | RCATGY | 3 cut(s) | 506, 1822, 2225 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1061, 1387, 1690 |
| XhoI | CTCGAG | 2 cut(s) | 1623, 2142 |
| XspI | CTAG | 6 cut(s) | 131, 201, 971, 1365, 1388, 1514 |