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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 339 |
| AccB1I | GGYRCC | 1 cut(s) | 411 |
| AccBSI | CCGCTC | 2 cut(s) | 268, 409 |
| AccI | GTMKAC | 2 cut(s) | 36, 167 |
| AciI | CCGC | 8 cut(s) | 115, 128, 171, 242, 268, 290, 371, 409 |
| AclWI | GGATC | 2 cut(s) | 9, 22 |
| AcoI | YGGCCR | 1 cut(s) | 399 |
| AcuI | CTGAAG | 3 cut(s) | 4, 152, 175 |
| AcyI | GRCGYC | 2 cut(s) | 245, 336 |
| AfaI | GTAC | 1 cut(s) | 9 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 301, 408 |
| AjiI | CACGTC | 1 cut(s) | 211 |
| AjnI | CCWGG | 4 cut(s) | 237, 318, 380, 414 |
| AluBI | AGCT | 2 cut(s) | 274, 328 |
| AluI | AGCT | 2 cut(s) | 274, 328 |
| AlwI | GGATC | 2 cut(s) | 9, 22 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 148 |
| Ama87I | CYCGRG | 1 cut(s) | 118 |
| AoxI | GGCC | 4 cut(s) | 80, 292, 315, 399 |
| ApaI | GGGCCC | 1 cut(s) | 84 |
| ApeKI | GCWGC | 2 cut(s) | 90, 253 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 18, 50 |
| AspLEI | GCGC | 1 cut(s) | 32 |
| AspS9I | GGNCC | 4 cut(s) | 80, 81, 292, 316 |
| AsuC2I | CCSGG | 1 cut(s) | 78 |
| AsuHPI | GGTGA | 1 cut(s) | 66 |
| AvaI | CYCGRG | 1 cut(s) | 118 |
| BaeGI | GKGCMC | 2 cut(s) | 84, 210 |
| BalI | TGGCCA | 1 cut(s) | 401 |
| BamHI | GGATCC | 1 cut(s) | 14 |
| BanI | GGYRCC | 1 cut(s) | 411 |
| BanII | GRGCYC | 2 cut(s) | 84, 225 |
| BauI | CACGAG | 1 cut(s) | 227 |
| BbvCI | CCTCAGC | 1 cut(s) | 275 |
| BbvI | GCAGC | 2 cut(s) | 102, 265 |
| BccI | CCATC | 1 cut(s) | 356 |
| BceAI | ACGGC | 2 cut(s) | 17, 158 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 350, 384 |
| BciT130I | CCWGG | 4 cut(s) | 239, 320, 382, 416 |
| BcnI | CCSGG | 1 cut(s) | 78 |
| BfaI | CTAG | 1 cut(s) | 47 |
| BfmI | CTRYAG | 1 cut(s) | 140 |
| BfoI | RGCGCY | 1 cut(s) | 33 |
| BisI | GCNGC | 5 cut(s) | 91, 243, 254, 372, 410 |
| BlsI | GCNGC | 5 cut(s) | 92, 244, 255, 373, 411 |
| Bme1390I | CCNGG | 5 cut(s) | 78, 239, 320, 382, 416 |
| BmeT110I | CYCGRG | 1 cut(s) | 118 |
| BmgBI | CACGTC | 1 cut(s) | 211 |
| BmgT120I | GGNCC | 4 cut(s) | 80, 81, 292, 316 |
| BmiI | GGNNCC | 7 cut(s) | 16, 81, 82, 113, 125, 224, 413 |
| BmrFI | CCNGG | 5 cut(s) | 78, 239, 320, 382, 416 |
| BmsI | GCATC | 2 cut(s) | 358, 367 |
| BoxI | GACNNNNGTC | 1 cut(s) | 173 |
| BpmI | CTGGAG | 2 cut(s) | 170, 281 |
| Bpu10I | CCTNAGC | 1 cut(s) | 275 |
| BpuMI | CCSGG | 1 cut(s) | 78 |
| BsaHI | GRCGYC | 2 cut(s) | 245, 336 |
| BsaJI | CCNNGG | 4 cut(s) | 77, 119, 318, 381 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 301, 408 |
| BseBI | CCWGG | 4 cut(s) | 239, 320, 382, 416 |
| BseDI | CCNNGG | 4 cut(s) | 77, 119, 318, 381 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 301, 408 |
| BseMII | CTCAG | 1 cut(s) | 266 |
| BseRI | GAGGAG | 2 cut(s) | 73, 76 |
| BseSI | GKGCMC | 2 cut(s) | 84, 210 |
| BseXI | GCAGC | 2 cut(s) | 102, 265 |
| Bsh1285I | CGRYCG | 2 cut(s) | 167, 171 |
| BshFI | GGCC | 4 cut(s) | 82, 294, 317, 401 |
| BshNI | GGYRCC | 1 cut(s) | 411 |
| BsiEI | CGRYCG | 2 cut(s) | 167, 171 |
| BsiHKCI | CYCGRG | 1 cut(s) | 118 |
| BsiSI | CCGG | 1 cut(s) | 77 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 301, 408 |
| BsnI | GGCC | 4 cut(s) | 82, 294, 317, 401 |
| BsoBI | CYCGRG | 1 cut(s) | 118 |
| Bsp120I | GGGCCC | 1 cut(s) | 80 |
| Bsp1286I | GDGCHC | 3 cut(s) | 84, 210, 225 |
| Bsp143I | GATC | 1 cut(s) | 14 |
| BspACI | CCGC | 8 cut(s) | 115, 128, 171, 242, 268, 290, 371, 409 |
| BspANI | GGCC | 4 cut(s) | 82, 294, 317, 401 |
| BspCNI | CTCAG | 1 cut(s) | 267 |
| BspLI | GGNNCC | 7 cut(s) | 16, 81, 82, 113, 125, 224, 413 |
| BspPI | GGATC | 2 cut(s) | 9, 22 |
| BspT107I | GGYRCC | 1 cut(s) | 411 |
| BsrBI | CCGCTC | 2 cut(s) | 268, 409 |
| BssECI | CCNNGG | 4 cut(s) | 77, 119, 318, 381 |
| BssMI | GATC | 1 cut(s) | 14 |
| BssNI | GRCGYC | 2 cut(s) | 245, 336 |
| BssSI | CACGAG | 1 cut(s) | 227 |
| Bst2BI | CACGAG | 1 cut(s) | 227 |
| Bst2UI | CCWGG | 4 cut(s) | 239, 320, 382, 416 |
| Bst6I | CTCTTC | 1 cut(s) | 50 |
| BstACI | GRCGYC | 2 cut(s) | 245, 336 |
| BstC8I | GCNNGC | 3 cut(s) | 110, 292, 330 |
| BstDEI | CTNAG | 1 cut(s) | 275 |
| BstEII | GGTNACC | 1 cut(s) | 72 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 299 |
| BstH2I | RGCGCY | 1 cut(s) | 33 |
| BstHHI | GCGC | 1 cut(s) | 32 |
| BstKTI | GATC | 1 cut(s) | 17 |
| BstMBI | GATC | 1 cut(s) | 14 |
| BstMCI | CGRYCG | 2 cut(s) | 167, 171 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 114, 136, 377 |
| BstNI | CCWGG | 4 cut(s) | 239, 320, 382, 416 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 173 |
| BstPI | GGTNACC | 1 cut(s) | 72 |
| BstSCI | CCNGG | 5 cut(s) | 76, 237, 318, 380, 414 |
| BstSFI | CTRYAG | 1 cut(s) | 140 |
| BstSLI | GKGCMC | 2 cut(s) | 84, 210 |
| BstV1I | GCAGC | 2 cut(s) | 102, 265 |
| BstX2I | RGATCY | 1 cut(s) | 14 |
| BstYI | RGATCY | 1 cut(s) | 14 |
| BsuRI | GGCC | 4 cut(s) | 82, 294, 317, 401 |
| BtgZI | GCGATG | 1 cut(s) | 381 |
| BtrI | CACGTC | 1 cut(s) | 211 |
| Cac8I | GCNNGC | 3 cut(s) | 110, 292, 330 |
| CaiI | CAGNNNCTG | 1 cut(s) | 148 |
| CfoI | GCGC | 1 cut(s) | 32 |
| Cfr13I | GGNCC | 4 cut(s) | 80, 81, 292, 316 |
| CseI | GACGC | 1 cut(s) | 234 |
| Csp6I | GTAC | 1 cut(s) | 8 |
| CviQI | GTAC | 1 cut(s) | 8 |
| DdeI | CTNAG | 1 cut(s) | 275 |
| DpnI | GATC | 1 cut(s) | 16 |
| DpnII | GATC | 1 cut(s) | 14 |
| EaeI | YGGCCR | 1 cut(s) | 399 |
| Eam1104I | CTCTTC | 1 cut(s) | 50 |
| EarI | CTCTTC | 1 cut(s) | 50 |
| EciI | GGCGGA | 1 cut(s) | 104 |
| Eco24I | GRGCYC | 2 cut(s) | 84, 225 |
| Eco57I | CTGAAG | 3 cut(s) | 4, 152, 175 |
| Eco88I | CYCGRG | 1 cut(s) | 118 |
| Eco91I | GGTNACC | 1 cut(s) | 72 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 299 |
| EcoO109I | RGGNCCY | 1 cut(s) | 80 |
| EcoO65I | GGTNACC | 1 cut(s) | 72 |
| EcoRII | CCWGG | 4 cut(s) | 237, 318, 380, 414 |
| EcoT38I | GRGCYC | 2 cut(s) | 84, 225 |
| FauI | CCCGC | 3 cut(s) | 135, 261, 283 |
| FblI | GTMKAC | 2 cut(s) | 36, 167 |
| Fnu4HI | GCNGC | 5 cut(s) | 91, 243, 254, 372, 410 |
| FriOI | GRGCYC | 2 cut(s) | 84, 225 |
| Fsp4HI | GCNGC | 5 cut(s) | 91, 243, 254, 372, 410 |
| FspBI | CTAG | 1 cut(s) | 47 |
| GlaI | GCGC | 1 cut(s) | 31 |
| GluI | GCNGC | 5 cut(s) | 91, 243, 254, 372, 410 |
| GsuI | CTGGAG | 2 cut(s) | 170, 281 |
| HaeII | RGCGCY | 1 cut(s) | 33 |
| HaeIII | GGCC | 4 cut(s) | 82, 294, 317, 401 |
| HapII | CCGG | 1 cut(s) | 77 |
| HgaI | GACGC | 1 cut(s) | 234 |
| HhaI | GCGC | 1 cut(s) | 32 |
| Hin1I | GRCGYC | 2 cut(s) | 245, 336 |
| Hin6I | GCGC | 1 cut(s) | 30 |
| HinP1I | GCGC | 1 cut(s) | 30 |
| HincII | GTYRAC | 1 cut(s) | 168 |
| HindII | GTYRAC | 1 cut(s) | 168 |
| HinfI | GANTC | 3 cut(s) | 43, 145, 182 |
| HpaII | CCGG | 1 cut(s) | 77 |
| HphI | GGTGA | 1 cut(s) | 66 |
| Hpy166II | GTNNAC | 2 cut(s) | 37, 168 |
| Hpy188III | TCNNGA | 2 cut(s) | 149, 298 |
| Hpy8I | GTNNAC | 2 cut(s) | 37, 168 |
| Hpy99I | CGWCG | 4 cut(s) | 215, 218, 341, 348 |
| HpyAV | CCTTC | 4 cut(s) | 28, 199, 295, 307 |
| HpyCH4IV | ACGT | 4 cut(s) | 210, 336, 346, 396 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 114, 136, 377 |
| HpyF3I | CTNAG | 1 cut(s) | 275 |
| HpySE526I | ACGT | 4 cut(s) | 210, 336, 346, 396 |
| Hsp92I | GRCGYC | 2 cut(s) | 245, 336 |
| HspAI | GCGC | 1 cut(s) | 30 |
| Kzo9I | GATC | 1 cut(s) | 14 |
| LmnI | GCTCC | 4 cut(s) | 117, 129, 228, 271 |
| Lsp1109I | GCAGC | 2 cut(s) | 102, 265 |
| LweI | GCATC | 2 cut(s) | 358, 367 |
| MaeI | CTAG | 1 cut(s) | 47 |
| MaeII | ACGT | 4 cut(s) | 210, 336, 346, 396 |
| MaeIII | GTNAC | 1 cut(s) | 72 |
| MalI | GATC | 1 cut(s) | 16 |
| MbiI | CCGCTC | 2 cut(s) | 268, 409 |
| MboI | GATC | 1 cut(s) | 14 |
| MboII | GAAGA | 3 cut(s) | 67, 108, 293 |
| MflI | RGATCY | 1 cut(s) | 14 |
| MhlI | GDGCHC | 3 cut(s) | 84, 210, 225 |
| MlsI | TGGCCA | 1 cut(s) | 401 |
| MluCI | AATT | 1 cut(s) | 305 |
| MluNI | TGGCCA | 1 cut(s) | 401 |
| MlyI | GAGTC | 2 cut(s) | 37, 154 |
| MnlI | CCTC | 9 cut(s) | 5, 51, 54, 57, 63, 114, 145, 270, 305 |
| Mox20I | TGGCCA | 1 cut(s) | 401 |
| MscI | TGGCCA | 1 cut(s) | 401 |
| Msp20I | TGGCCA | 1 cut(s) | 401 |
| MspA1I | CMGCKG | 1 cut(s) | 130 |
| MspI | CCGG | 1 cut(s) | 77 |
| MspR9I | CCNGG | 5 cut(s) | 78, 239, 320, 382, 416 |
| MvaI | CCWGG | 4 cut(s) | 239, 320, 382, 416 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 114, 136, 377 |
| NciI | CCSGG | 1 cut(s) | 78 |
| NdeII | GATC | 1 cut(s) | 14 |
| NlaIV | GGNNCC | 7 cut(s) | 16, 81, 82, 113, 125, 224, 413 |
| NmuCI | GTSAC | 1 cut(s) | 72 |
| PfeI | GAWTC | 1 cut(s) | 182 |
| PkrI | GCNGC | 5 cut(s) | 92, 244, 255, 373, 411 |
| PleI | GAGTC | 2 cut(s) | 37, 153 |
| PpsI | GAGTC | 2 cut(s) | 37, 153 |
| PshAI | GACNNNNGTC | 1 cut(s) | 173 |
| Psp6I | CCWGG | 4 cut(s) | 237, 318, 380, 414 |
| PspEI | GGTNACC | 1 cut(s) | 72 |
| PspGI | CCWGG | 4 cut(s) | 237, 318, 380, 414 |
| PspN4I | GGNNCC | 7 cut(s) | 16, 81, 82, 113, 125, 224, 413 |
| PspOMI | GGGCCC | 1 cut(s) | 80 |
| PspPI | GGNCC | 4 cut(s) | 80, 81, 292, 316 |
| PstNI | CAGNNNCTG | 1 cut(s) | 148 |
| PsuI | RGATCY | 1 cut(s) | 14 |
| RsaI | GTAC | 1 cut(s) | 9 |
| RsaNI | GTAC | 1 cut(s) | 8 |
| SalI | GTCGAC | 1 cut(s) | 166 |
| SatI | GCNGC | 5 cut(s) | 91, 243, 254, 372, 410 |
| Sau3AI | GATC | 1 cut(s) | 14 |
| Sau96I | GGNCC | 4 cut(s) | 80, 81, 292, 316 |
| SchI | GAGTC | 2 cut(s) | 37, 154 |
| ScrFI | CCNGG | 5 cut(s) | 78, 239, 320, 382, 416 |
| SduI | GDGCHC | 3 cut(s) | 84, 210, 225 |
| SetI | ASST | 9 cut(s) | 68, 74, 213, 276, 330, 339, 349, 399, 417 |
| SfaNI | GCATC | 2 cut(s) | 358, 367 |
| SfcI | CTRYAG | 1 cut(s) | 140 |
| Sse9I | AATT | 1 cut(s) | 305 |
| SsiI | CCGC | 8 cut(s) | 115, 128, 171, 242, 268, 290, 371, 409 |
| SspMI | CTAG | 1 cut(s) | 47 |
| StyD4I | CCNGG | 5 cut(s) | 76, 237, 318, 380, 414 |
| TaiI | ACGT | 4 cut(s) | 213, 339, 349, 399 |
| TaqI | TCGA | 2 cut(s) | 167, 339 |
| TaqII | GACCGA | 2 cut(s) | 153, 374 |
| TasI | AATT | 1 cut(s) | 305 |
| TauI | GCSGC | 3 cut(s) | 245, 374, 412 |
| TfiI | GAWTC | 1 cut(s) | 182 |
| TseFI | GTSAC | 1 cut(s) | 72 |
| TseI | GCWGC | 2 cut(s) | 90, 253 |
| Tsp45I | GTSAC | 1 cut(s) | 72 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 299 |
| XmiI | GTMKAC | 2 cut(s) | 36, 167 |
| XspI | CTAG | 1 cut(s) | 47 |
| ZraI | GACGTC | 1 cut(s) | 337 |