Putative gypsy type transposon
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 3 cut(s) | 12, 1652, 1743 |
| AccB1I | GGYRCC | 8 cut(s) | 344, 532, 1195, 1216, 1815, 2069, 2105, 2131 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 159, 597, 2115 |
| AccBSI | CCGCTC | 4 cut(s) | 893, 1672, 1813, 2180 |
| AccI | GTMKAC | 1 cut(s) | 1571 |
| AccIII | TCCGGA | 2 cut(s) | 38, 190 |
| AclWI | GGATC | 4 cut(s) | 49, 1309, 1322, 1900 |
| AcoI | YGGCCR | 5 cut(s) | 3, 1437, 1803, 2049, 2209 |
| AcsI | RAATTY | 1 cut(s) | 73 |
| AcuI | CTGAAG | 9 cut(s) | 66, 419, 716, 1089, 1106, 1304, 1452, 1579, 1895 |
| AcyI | GRCGYC | 4 cut(s) | 9, 1196, 1649, 1740 |
| AdeI | CACNNNGTG | 1 cut(s) | 997 |
| AfaI | GTAC | 7 cut(s) | 181, 669, 785, 905, 1309, 2036, 2176 |
| AfeI | AGCGCT | 1 cut(s) | 615 |
| AflIII | ACRYGT | 2 cut(s) | 594, 1857 |
| AgsI | TTSAA | 5 cut(s) | 356, 465, 1048, 2012, 2219 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 778 |
| AjnI | CCWGG | 8 cut(s) | 200, 702, 993, 1107, 1662, 1722, 1818, 2206 |
| AleI | CACNNNNGTG | 1 cut(s) | 1445 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1497, 1529 |
| AluBI | AGCT | 9 cut(s) | 433, 461, 754, 1004, 1461, 1678, 1732, 2078, 2126 |
| AluI | AGCT | 9 cut(s) | 433, 461, 754, 1004, 1461, 1678, 1732, 2078, 2126 |
| Alw21I | GWGCWC | 1 cut(s) | 748 |
| Alw26I | GTCTC | 2 cut(s) | 990, 1004 |
| AlwI | GGATC | 4 cut(s) | 49, 1309, 1322, 1900 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1663 |
| Ama87I | CYCGRG | 1 cut(s) | 1418 |
| Aor13HI | TCCGGA | 2 cut(s) | 38, 190 |
| Aor51HI | AGCGCT | 1 cut(s) | 615 |
| ApaI | GGGCCC | 1 cut(s) | 1384 |
| ApoI | RAATTY | 1 cut(s) | 73 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1318, 1350 |
| AspS9I | GGNCC | 8 cut(s) | 478, 650, 1060, 1380, 1381, 1696, 1720, 1873 |
| AsuC2I | CCSGG | 4 cut(s) | 420, 1020, 1378, 1877 |
| AsuHPI | GGTGA | 7 cut(s) | 439, 983, 1366, 1514, 1514, 1891, 1970 |
| AsuNHI | GCTAGC | 2 cut(s) | 278, 610 |
| AvaI | CYCGRG | 1 cut(s) | 1418 |
| AvaII | GGWCC | 3 cut(s) | 650, 1060, 1873 |
| AxyI | CCTNAGG | 1 cut(s) | 767 |
| BaeGI | GKGCMC | 2 cut(s) | 590, 1384 |
| BalI | TGGCCA | 3 cut(s) | 1439, 1805, 2211 |
| BamHI | GGATCC | 1 cut(s) | 1314 |
| BanI | GGYRCC | 8 cut(s) | 344, 532, 1195, 1216, 1815, 2069, 2105, 2131 |
| BanII | GRGCYC | 3 cut(s) | 1157, 1384, 1629 |
| BauI | CACGAG | 1 cut(s) | 915 |
| Bbv12I | GWGCWC | 1 cut(s) | 748 |
| BbvCI | CCTCAGC | 2 cut(s) | 1679, 1980 |
| BccI | CCATC | 5 cut(s) | 893, 1117, 1165, 2117, 2155 |
| BceAI | ACGGC | 7 cut(s) | 358, 371, 1223, 1255, 1317, 1562, 1783 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1754, 1788 |
| BciT130I | CCWGG | 8 cut(s) | 202, 704, 995, 1109, 1664, 1724, 1820, 2208 |
| BciVI | GTATCC | 1 cut(s) | 307 |
| BcnI | CCSGG | 4 cut(s) | 420, 1020, 1378, 1877 |
| BcoDI | GTCTC | 2 cut(s) | 990, 1004 |
| BfaI | CTAG | 5 cut(s) | 131, 248, 279, 611, 1785 |
| BfmI | CTRYAG | 2 cut(s) | 146, 2093 |
| BfoI | RGCGCY | 6 cut(s) | 247, 617, 703, 1151, 1199, 1333 |
| BfuI | GTATCC | 1 cut(s) | 307 |
| BlpI | GCTNAGC | 1 cut(s) | 1151 |
| Bme18I | GGWCC | 3 cut(s) | 650, 1060, 1873 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 778 |
| BmeT110I | CYCGRG | 1 cut(s) | 1418 |
| BmgT120I | GGNCC | 8 cut(s) | 478, 650, 1060, 1380, 1381, 1696, 1720, 1873 |
| BmrI | ACTGGG | 2 cut(s) | 1547, 2125 |
| BmsI | GCATC | 5 cut(s) | 576, 951, 1762, 1771, 2079 |
| BmtI | GCTAGC | 2 cut(s) | 282, 614 |
| BmuI | ACTGGG | 2 cut(s) | 1547, 2125 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1577 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 507, 539 |
| BpmI | CTGGAG | 5 cut(s) | 1330, 1574, 1685, 1841, 1973 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1679, 1980, 2074 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1151 |
| BpuMI | CCSGG | 4 cut(s) | 420, 1020, 1378, 1877 |
| BsaHI | GRCGYC | 4 cut(s) | 9, 1196, 1649, 1740 |
| BsaI | GGTCTC | 1 cut(s) | 1004 |
| BsaWI | WCCGGW | 2 cut(s) | 38, 190 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 842, 872, 1502, 1532 |
| Bse118I | RCCGGY | 5 cut(s) | 393, 786, 1198, 2066, 2134 |
| Bse1I | ACTGG | 7 cut(s) | 690, 979, 1347, 1542, 2052, 2120, 2172 |
| Bse21I | CCTNAGG | 1 cut(s) | 767 |
| BseAI | TCCGGA | 2 cut(s) | 38, 190 |
| BseBI | CCWGG | 8 cut(s) | 202, 704, 995, 1109, 1664, 1724, 1820, 2208 |
| BseGI | GGATG | 4 cut(s) | 378, 885, 1366, 2147 |
| BseMII | CTCAG | 5 cut(s) | 742, 758, 1142, 1670, 1971 |
| BseNI | ACTGG | 7 cut(s) | 690, 979, 1347, 1542, 2052, 2120, 2172 |
| BseRI | GAGGAG | 4 cut(s) | 254, 381, 467, 978 |
| BseSI | GKGCMC | 2 cut(s) | 590, 1384 |
| BseYI | CCCAGC | 1 cut(s) | 1301 |
| BsgI | GTGCAG | 3 cut(s) | 126, 1161, 2162 |
| Bsh1285I | CGRYCG | 4 cut(s) | 657, 1571, 1575, 2139 |
| BshNI | GGYRCC | 8 cut(s) | 344, 532, 1195, 1216, 1815, 2069, 2105, 2131 |
| BsiEI | CGRYCG | 4 cut(s) | 657, 1571, 1575, 2139 |
| BsiHKAI | GWGCWC | 1 cut(s) | 748 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1418 |
| BsiWI | CGTACG | 1 cut(s) | 179 |
| BslFI | GGGAC | 5 cut(s) | 785, 1721, 1761, 1846, 1886 |
| BsmAI | GTCTC | 2 cut(s) | 990, 1004 |
| BsmBI | CGTCTC | 1 cut(s) | 990 |
| BsmFI | GGGAC | 5 cut(s) | 785, 1721, 1761, 1846, 1886 |
| Bso31I | GGTCTC | 1 cut(s) | 1004 |
| BsoBI | CYCGRG | 1 cut(s) | 1418 |
| Bsp120I | GGGCCC | 1 cut(s) | 1380 |
| Bsp1286I | GDGCHC | 5 cut(s) | 590, 748, 1157, 1384, 1629 |
| Bsp13I | TCCGGA | 2 cut(s) | 38, 190 |
| Bsp143I | GATC | 5 cut(s) | 41, 756, 1314, 1905, 1941 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1151 |
| BspCNI | CTCAG | 5 cut(s) | 741, 759, 1143, 1671, 1972 |
| BspEI | TCCGGA | 2 cut(s) | 38, 190 |
| BspMAI | CTGCAG | 1 cut(s) | 2097 |
| BspOI | GCTAGC | 2 cut(s) | 282, 614 |
| BspPI | GGATC | 4 cut(s) | 49, 1309, 1322, 1900 |
| BspT107I | GGYRCC | 8 cut(s) | 344, 532, 1195, 1216, 1815, 2069, 2105, 2131 |
| BspTNI | GGTCTC | 1 cut(s) | 1004 |
| BsrBI | CCGCTC | 4 cut(s) | 893, 1672, 1813, 2180 |
| BsrFI | RCCGGY | 5 cut(s) | 393, 786, 1198, 2066, 2134 |
| BsrI | ACTGG | 7 cut(s) | 690, 979, 1347, 1542, 2052, 2120, 2172 |
| BssAI | RCCGGY | 5 cut(s) | 393, 786, 1198, 2066, 2134 |
| BssMI | GATC | 5 cut(s) | 41, 756, 1314, 1905, 1941 |
| BssNI | GRCGYC | 4 cut(s) | 9, 1196, 1649, 1740 |
| BssSI | CACGAG | 1 cut(s) | 915 |
| BssT1I | CCWWGG | 1 cut(s) | 1842 |
| Bst2BI | CACGAG | 1 cut(s) | 915 |
| Bst2UI | CCWGG | 8 cut(s) | 202, 704, 995, 1109, 1664, 1724, 1820, 2208 |
| Bst4CI | ACNGT | 5 cut(s) | 448, 658, 1064, 1231, 1502 |
| Bst6I | CTCTTC | 3 cut(s) | 351, 918, 1350 |
| BstACI | GRCGYC | 4 cut(s) | 9, 1196, 1649, 1740 |
| BstDEI | CTNAG | 6 cut(s) | 728, 767, 1151, 1679, 1980, 2074 |
| BstDSI | CCRYGG | 6 cut(s) | 158, 474, 486, 657, 1170, 1257 |
| BstEII | GGTNACC | 4 cut(s) | 414, 1249, 1372, 1879 |
| BstF5I | GGATG | 4 cut(s) | 378, 885, 1366, 2147 |
| BstH2I | RGCGCY | 6 cut(s) | 247, 617, 703, 1151, 1199, 1333 |
| BstKTI | GATC | 5 cut(s) | 44, 759, 1317, 1908, 1944 |
| BstMAI | GTCTC | 2 cut(s) | 990, 1004 |
| BstMBI | GATC | 5 cut(s) | 41, 756, 1314, 1905, 1941 |
| BstMCI | CGRYCG | 4 cut(s) | 657, 1571, 1575, 2139 |
| BstNI | CCWGG | 8 cut(s) | 202, 704, 995, 1109, 1664, 1724, 1820, 2208 |
| BstNSI | RCATGY | 3 cut(s) | 598, 1616, 1861 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1577 |
| BstPI | GGTNACC | 4 cut(s) | 414, 1249, 1372, 1879 |
| BstSFI | CTRYAG | 2 cut(s) | 146, 2093 |
| BstSLI | GKGCMC | 2 cut(s) | 590, 1384 |
| BstX2I | RGATCY | 3 cut(s) | 41, 1314, 1905 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1447 |
| BstYI | RGATCY | 3 cut(s) | 41, 1314, 1905 |
| Bsu36I | CCTNAGG | 1 cut(s) | 767 |
| BsuI | GTATCC | 1 cut(s) | 307 |
| BtgI | CCRYGG | 6 cut(s) | 158, 474, 486, 657, 1170, 1257 |
| BtgZI | GCGATG | 2 cut(s) | 553, 1785 |
| BtsCI | GGATG | 4 cut(s) | 378, 885, 1366, 2147 |
| BtsI | GCAGTG | 3 cut(s) | 34, 116, 2184 |
| BtsIMutI | CAGTG | 5 cut(s) | 34, 116, 1354, 2045, 2184 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1663 |
| Cfr10I | RCCGGY | 5 cut(s) | 393, 786, 1198, 2066, 2134 |
| Cfr13I | GGNCC | 8 cut(s) | 478, 650, 1060, 1380, 1381, 1696, 1720, 1873 |
| Cfr42I | CCGCGG | 3 cut(s) | 477, 489, 1260 |
| CseI | GACGC | 4 cut(s) | 80, 176, 1049, 1142 |
| CsiI | ACCWGGT | 1 cut(s) | 993 |
| Csp6I | GTAC | 7 cut(s) | 180, 668, 784, 904, 1308, 2035, 2175 |
| CviAII | CATG | 5 cut(s) | 236, 494, 595, 1613, 1858 |
| CviQI | GTAC | 7 cut(s) | 180, 668, 784, 904, 1308, 2035, 2175 |
| DdeI | CTNAG | 6 cut(s) | 728, 767, 1151, 1679, 1980, 2074 |
| DinI | GGCGCC | 1 cut(s) | 1197 |
| DpnI | GATC | 5 cut(s) | 43, 758, 1316, 1907, 1943 |
| DpnII | GATC | 5 cut(s) | 41, 756, 1314, 1905, 1941 |
| DraIII | CACNNNGTG | 1 cut(s) | 997 |
| DriI | GACNNNNNGTC | 1 cut(s) | 778 |
| EaeI | YGGCCR | 5 cut(s) | 3, 1437, 1803, 2049, 2209 |
| Eam1104I | CTCTTC | 3 cut(s) | 351, 918, 1350 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 778 |
| EarI | CTCTTC | 3 cut(s) | 351, 918, 1350 |
| EciI | GGCGGA | 6 cut(s) | 429, 677, 973, 1404, 1862, 2045 |
| Eco130I | CCWWGG | 1 cut(s) | 1842 |
| Eco24I | GRGCYC | 3 cut(s) | 1157, 1384, 1629 |
| Eco31I | GGTCTC | 1 cut(s) | 1004 |
| Eco47I | GGWCC | 3 cut(s) | 650, 1060, 1873 |
| Eco47III | AGCGCT | 1 cut(s) | 615 |
| Eco57I | CTGAAG | 9 cut(s) | 66, 419, 716, 1089, 1106, 1304, 1452, 1579, 1895 |
| Eco81I | CCTNAGG | 1 cut(s) | 767 |
| Eco88I | CYCGRG | 1 cut(s) | 1418 |
| Eco91I | GGTNACC | 4 cut(s) | 414, 1249, 1372, 1879 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1380 |
| EcoO65I | GGTNACC | 4 cut(s) | 414, 1249, 1372, 1879 |
| EcoRII | CCWGG | 8 cut(s) | 200, 702, 993, 1107, 1662, 1722, 1818, 2206 |
| EcoT14I | CCWWGG | 1 cut(s) | 1842 |
| EcoT38I | GRGCYC | 3 cut(s) | 1157, 1384, 1629 |
| EgeI | GGCGCC | 1 cut(s) | 1197 |
| EheI | GGCGCC | 1 cut(s) | 1197 |
| ErhI | CCWWGG | 1 cut(s) | 1842 |
| Esp3I | CGTCTC | 1 cut(s) | 990 |
| FaeI | CATG | 5 cut(s) | 239, 497, 598, 1616, 1861 |
| FaqI | GGGAC | 5 cut(s) | 785, 1721, 1761, 1846, 1886 |
| FatI | CATG | 5 cut(s) | 235, 493, 594, 1612, 1857 |
| FblI | GTMKAC | 1 cut(s) | 1571 |
| FokI | GGATG | 4 cut(s) | 385, 872, 1373, 2134 |
| FriOI | GRGCYC | 3 cut(s) | 1157, 1384, 1629 |
| FspBI | CTAG | 5 cut(s) | 131, 248, 279, 611, 1785 |
| GsaI | CCCAGC | 1 cut(s) | 1305 |
| GsuI | CTGGAG | 5 cut(s) | 1330, 1574, 1685, 1841, 1973 |
| HaeII | RGCGCY | 6 cut(s) | 247, 617, 703, 1151, 1199, 1333 |
| HgaI | GACGC | 4 cut(s) | 80, 176, 1049, 1142 |
| Hin1I | GRCGYC | 4 cut(s) | 9, 1196, 1649, 1740 |
| Hin1II | CATG | 5 cut(s) | 239, 497, 598, 1616, 1861 |
| HincII | GTYRAC | 4 cut(s) | 391, 724, 1337, 1572 |
| HindII | GTYRAC | 4 cut(s) | 391, 724, 1337, 1572 |
| HindIII | AAGCTT | 2 cut(s) | 459, 2124 |
| HphI | GGTGA | 7 cut(s) | 439, 983, 1366, 1514, 1514, 1891, 1970 |
| Hpy166II | GTNNAC | 6 cut(s) | 391, 724, 1132, 1337, 1505, 1572 |
| Hpy188I | TCNGA | 6 cut(s) | 46, 874, 890, 966, 1105, 1162 |
| Hpy188III | TCNNGA | 8 cut(s) | 39, 191, 917, 1048, 1084, 1553, 1642, 1702 |
| Hpy8I | GTNNAC | 6 cut(s) | 391, 724, 1132, 1337, 1505, 1572 |
| HpyCH4III | ACNGT | 5 cut(s) | 448, 658, 1064, 1231, 1502 |
| HpyCH4IV | ACGT | 7 cut(s) | 9, 182, 1649, 1740, 1750, 1800, 2214 |
| HpyCH4V | TGCA | 7 cut(s) | 107, 235, 493, 901, 1178, 2095, 2143 |
| HpyF3I | CTNAG | 6 cut(s) | 728, 767, 1151, 1679, 1980, 2074 |
| HpySE526I | ACGT | 7 cut(s) | 9, 182, 1649, 1740, 1750, 1800, 2214 |
| Hsp92I | GRCGYC | 4 cut(s) | 9, 1196, 1649, 1740 |
| Hsp92II | CATG | 5 cut(s) | 239, 497, 598, 1616, 1861 |
| KasI | GGCGCC | 1 cut(s) | 1195 |
| Kpn2I | TCCGGA | 2 cut(s) | 38, 190 |
| KroI | GCCGGC | 1 cut(s) | 1198 |
| KroNI | GCCGGC | 1 cut(s) | 1200 |
| KspI | CCGCGG | 3 cut(s) | 477, 489, 1260 |
| Kzo9I | GATC | 5 cut(s) | 41, 756, 1314, 1905, 1941 |
| LweI | GCATC | 5 cut(s) | 576, 951, 1762, 1771, 2079 |
| MabI | ACCWGGT | 1 cut(s) | 993 |
| MaeI | CTAG | 5 cut(s) | 131, 248, 279, 611, 1785 |
| MaeII | ACGT | 7 cut(s) | 9, 182, 1649, 1740, 1750, 1800, 2214 |
| MaeIII | GTNAC | 5 cut(s) | 414, 517, 1249, 1372, 1879 |
| MalI | GATC | 5 cut(s) | 43, 758, 1316, 1907, 1943 |
| MbiI | CCGCTC | 4 cut(s) | 893, 1672, 1813, 2180 |
| MboI | GATC | 5 cut(s) | 41, 756, 1314, 1905, 1941 |
| MboII | GAAGA | 7 cut(s) | 176, 368, 935, 1132, 1367, 1408, 1906 |
| MflI | RGATCY | 3 cut(s) | 41, 1314, 1905 |
| MhlI | GDGCHC | 5 cut(s) | 590, 748, 1157, 1384, 1629 |
| MlsI | TGGCCA | 3 cut(s) | 1439, 1805, 2211 |
| MluCI | AATT | 4 cut(s) | 73, 864, 1078, 1586 |
| MluNI | TGGCCA | 3 cut(s) | 1439, 1805, 2211 |
| Mly113I | GGCGCC | 1 cut(s) | 1196 |
| MlyI | GAGTC | 6 cut(s) | 77, 329, 767, 907, 1337, 1928 |
| MmeI | TCCRAC | 3 cut(s) | 852, 1128, 1245 |
| Mox20I | TGGCCA | 3 cut(s) | 1439, 1805, 2211 |
| MreI | CGCCGGCG | 1 cut(s) | 1198 |
| MroI | TCCGGA | 2 cut(s) | 38, 190 |
| MroNI | GCCGGC | 1 cut(s) | 1198 |
| MscI | TGGCCA | 3 cut(s) | 1439, 1805, 2211 |
| MseI | TTAA | 1 cut(s) | 867 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1445 |
| Msp20I | TGGCCA | 3 cut(s) | 1439, 1805, 2211 |
| MvaI | CCWGG | 8 cut(s) | 202, 704, 995, 1109, 1664, 1724, 1820, 2208 |
| NaeI | GCCGGC | 1 cut(s) | 1200 |
| NarI | GGCGCC | 1 cut(s) | 1196 |
| NciI | CCSGG | 4 cut(s) | 420, 1020, 1378, 1877 |
| NdeII | GATC | 5 cut(s) | 41, 756, 1314, 1905, 1941 |
| NgoMIV | GCCGGC | 1 cut(s) | 1198 |
| NheI | GCTAGC | 2 cut(s) | 278, 610 |
| NlaIII | CATG | 5 cut(s) | 239, 497, 598, 1616, 1861 |
| NmeAIII | GCCGAG | 2 cut(s) | 1510, 2077 |
| NmuCI | GTSAC | 3 cut(s) | 517, 1372, 1879 |
| NspI | RCATGY | 3 cut(s) | 598, 1616, 1861 |
| OliI | CACNNNNGTG | 1 cut(s) | 1445 |
| PciI | ACATGT | 2 cut(s) | 594, 1857 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 92, 184 |
| PdiI | GCCGGC | 1 cut(s) | 1200 |
| PfeI | GAWTC | 4 cut(s) | 35, 961, 1466, 2012 |
| Pfl23II | CGTACG | 1 cut(s) | 179 |
| PflFI | GACNNNGTC | 1 cut(s) | 1648 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 159, 597, 2115 |
| PleI | GAGTC | 6 cut(s) | 77, 328, 767, 907, 1337, 1927 |
| PluTI | GGCGCC | 1 cut(s) | 1199 |
| PpsI | GAGTC | 6 cut(s) | 77, 328, 767, 907, 1337, 1927 |
| PscI | ACATGT | 2 cut(s) | 594, 1857 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1577 |
| Psp6I | CCWGG | 8 cut(s) | 200, 702, 993, 1107, 1662, 1722, 1818, 2206 |
| PspEI | GGTNACC | 4 cut(s) | 414, 1249, 1372, 1879 |
| PspFI | CCCAGC | 1 cut(s) | 1301 |
| PspGI | CCWGG | 8 cut(s) | 200, 702, 993, 1107, 1662, 1722, 1818, 2206 |
| PspLI | CGTACG | 1 cut(s) | 179 |
| PspOMI | GGGCCC | 1 cut(s) | 1380 |
| PspPI | GGNCC | 8 cut(s) | 478, 650, 1060, 1380, 1381, 1696, 1720, 1873 |
| PstI | CTGCAG | 1 cut(s) | 2097 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1663 |
| PsuI | RGATCY | 3 cut(s) | 41, 1314, 1905 |
| PsyI | GACNNNGTC | 1 cut(s) | 1648 |
| RsaI | GTAC | 7 cut(s) | 181, 669, 785, 905, 1309, 2036, 2176 |
| RsaNI | GTAC | 7 cut(s) | 180, 668, 784, 904, 1308, 2035, 2175 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1445 |
| SacII | CCGCGG | 3 cut(s) | 477, 489, 1260 |
| SalI | GTCGAC | 1 cut(s) | 1570 |
| SaqAI | TTAA | 1 cut(s) | 867 |
| Sau3AI | GATC | 5 cut(s) | 41, 756, 1314, 1905, 1941 |
| Sau96I | GGNCC | 8 cut(s) | 478, 650, 1060, 1380, 1381, 1696, 1720, 1873 |
| SchI | GAGTC | 6 cut(s) | 77, 329, 767, 907, 1337, 1928 |
| SduI | GDGCHC | 5 cut(s) | 590, 748, 1157, 1384, 1629 |
| SexAI | ACCWGGT | 1 cut(s) | 993 |
| SfaNI | GCATC | 5 cut(s) | 576, 951, 1762, 1771, 2079 |
| SfcI | CTRYAG | 2 cut(s) | 146, 2093 |
| SfoI | GGCGCC | 1 cut(s) | 1197 |
| Sfr303I | CCGCGG | 3 cut(s) | 477, 489, 1260 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1198 |
| SgrBI | CCGCGG | 3 cut(s) | 477, 489, 1260 |
| SinI | GGWCC | 3 cut(s) | 650, 1060, 1873 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1445 |
| Sse9I | AATT | 4 cut(s) | 73, 864, 1078, 1586 |
| SspDI | GGCGCC | 1 cut(s) | 1195 |
| SspI | AATATT | 1 cut(s) | 504 |
| SspMI | CTAG | 5 cut(s) | 131, 248, 279, 611, 1785 |
| StyI | CCWWGG | 1 cut(s) | 1842 |
| TaaI | ACNGT | 5 cut(s) | 448, 658, 1064, 1231, 1502 |
| TaiI | ACGT | 7 cut(s) | 12, 185, 1652, 1743, 1753, 1803, 2217 |
| TaqI | TCGA | 9 cut(s) | 23, 138, 336, 759, 776, 1274, 1571, 1743, 2112 |
| TaqII | GACCGA | 2 cut(s) | 667, 1557 |
| TasI | AATT | 4 cut(s) | 73, 864, 1078, 1586 |
| TatI | WGTACW | 2 cut(s) | 903, 2034 |
| TfiI | GAWTC | 4 cut(s) | 35, 961, 1466, 2012 |
| Tru1I | TTAA | 1 cut(s) | 867 |
| Tru9I | TTAA | 1 cut(s) | 867 |
| TscAI | CASTG | 5 cut(s) | 34, 123, 1354, 2052, 2191 |
| TseFI | GTSAC | 3 cut(s) | 517, 1372, 1879 |
| Tsp45I | GTSAC | 3 cut(s) | 517, 1372, 1879 |
| TspDTI | ATGAA | 1 cut(s) | 1458 |
| TspGWI | ACGGA | 5 cut(s) | 84, 147, 972, 1256, 1952 |
| TspRI | CASTG | 5 cut(s) | 34, 123, 1354, 2052, 2191 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1648 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 159, 597, 2115 |
| VpaK11BI | GGWCC | 3 cut(s) | 650, 1060, 1873 |
| XapI | RAATTY | 1 cut(s) | 73 |
| XceI | RCATGY | 3 cut(s) | 598, 1616, 1861 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1261, 1660 |
| XmiI | GTMKAC | 1 cut(s) | 1571 |
| XspI | CTAG | 5 cut(s) | 131, 248, 279, 611, 1785 |
| ZraI | GACGTC | 3 cut(s) | 10, 1650, 1741 |