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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1315 |
| AatII | GACGTC | 1 cut(s) | 1980 |
| Acc36I | ACCTGC | 1 cut(s) | 1315 |
| AccB1I | GGYRCC | 5 cut(s) | 617, 1639, 2300, 2390, 2513 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 441, 766 |
| AccBSI | CCGCTC | 4 cut(s) | 1387, 1702, 1942, 2071 |
| AccI | GTMKAC | 2 cut(s) | 627, 1105 |
| AclWI | GGATC | 1 cut(s) | 1044 |
| AcoI | YGGCCR | 4 cut(s) | 781, 1396, 1950, 1998 |
| AcsI | RAATTY | 2 cut(s) | 1884, 2228 |
| AcuI | CTGAAG | 3 cut(s) | 1774, 2309, 2607 |
| AcvI | CACGTG | 1 cut(s) | 2477 |
| AcyI | GRCGYC | 4 cut(s) | 1640, 1844, 1977, 2301 |
| AfaI | GTAC | 4 cut(s) | 861, 999, 1193, 2185 |
| AfeI | AGCGCT | 2 cut(s) | 479, 1363 |
| AflIII | ACRYGT | 2 cut(s) | 763, 2029 |
| AgsI | TTSAA | 4 cut(s) | 1145, 1889, 2177, 2215 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 338, 947 |
| AjnI | CCWGG | 4 cut(s) | 440, 1393, 1766, 2501 |
| AleI | CACNNNNGTG | 1 cut(s) | 1404 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1697, 1729 |
| AlwI | GGATC | 1 cut(s) | 1044 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1222, 1858 |
| Ama87I | CYCGRG | 2 cut(s) | 745, 1232 |
| Aor51HI | AGCGCT | 2 cut(s) | 479, 1363 |
| ApaI | GGGCCC | 2 cut(s) | 1582, 2269 |
| ApoI | RAATTY | 2 cut(s) | 1884, 2228 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 838 |
| AsuC2I | CCSGG | 4 cut(s) | 746, 747, 809, 2263 |
| AsuII | TTCGAA | 1 cut(s) | 1613 |
| AsuNHI | GCTAGC | 1 cut(s) | 548 |
| AvaI | CYCGRG | 2 cut(s) | 745, 1232 |
| AvaII | GGWCC | 5 cut(s) | 964, 1156, 1485, 2436, 2547 |
| AxyI | CCTNAGG | 1 cut(s) | 2168 |
| BaeGI | GKGCMC | 3 cut(s) | 1582, 2269, 2395 |
| BalI | TGGCCA | 4 cut(s) | 783, 1398, 1952, 2000 |
| BanI | GGYRCC | 5 cut(s) | 617, 1639, 2300, 2390, 2513 |
| BanII | GRGCYC | 2 cut(s) | 1582, 2269 |
| BbrPI | CACGTG | 1 cut(s) | 2477 |
| BbvCI | CCTCAGC | 1 cut(s) | 2528 |
| BccI | CCATC | 9 cut(s) | 443, 608, 1301, 1302, 1688, 1725, 2009, 2312, 2504 |
| BceAI | ACGGC | 5 cut(s) | 608, 641, 1631, 1745, 2318 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 607, 641 |
| BciT130I | CCWGG | 4 cut(s) | 442, 1395, 1768, 2503 |
| BciVI | GTATCC | 2 cut(s) | 1383, 2363 |
| BcnI | CCSGG | 4 cut(s) | 746, 747, 809, 2263 |
| BfaI | CTAG | 5 cut(s) | 413, 483, 513, 549, 2489 |
| BfmI | CTRYAG | 3 cut(s) | 428, 1365, 2063 |
| BfoI | RGCGCY | 8 cut(s) | 481, 872, 918, 1247, 1365, 1643, 2199, 2304 |
| BfuAI | ACCTGC | 1 cut(s) | 1315 |
| BfuI | GTATCC | 2 cut(s) | 1383, 2363 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 984 |
| BlpI | GCTNAGC | 3 cut(s) | 36, 279, 1247 |
| Bme1390I | CCNGG | 8 cut(s) | 442, 746, 747, 809, 1395, 1768, 2263, 2503 |
| Bme18I | GGWCC | 5 cut(s) | 964, 1156, 1485, 2436, 2547 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 338, 947 |
| BmeT110I | CYCGRG | 2 cut(s) | 745, 1232 |
| BmrFI | CCNGG | 8 cut(s) | 442, 746, 747, 809, 1395, 1768, 2263, 2503 |
| BmtI | GCTAGC | 1 cut(s) | 552 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1646, 1678 |
| BpmI | CTGGAG | 3 cut(s) | 1202, 1880, 2406 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2528 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 36, 279, 1247 |
| Bpu14I | TTCGAA | 1 cut(s) | 1613 |
| BpuEI | CTTGAG | 3 cut(s) | 917, 1320, 2168 |
| BpuMI | CCSGG | 4 cut(s) | 746, 747, 809, 2263 |
| Bsa29I | ATCGAT | 1 cut(s) | 2567 |
| BsaAI | YACGTR | 2 cut(s) | 863, 2477 |
| BsaHI | GRCGYC | 4 cut(s) | 1640, 1844, 1977, 2301 |
| BsaI | GGTCTC | 2 cut(s) | 1898, 2516 |
| BsaWI | WCCGGW | 2 cut(s) | 684, 1264 |
| Bse118I | RCCGGY | 7 cut(s) | 904, 1315, 1343, 1432, 1468, 1524, 2341 |
| Bse1I | ACTGG | 4 cut(s) | 960, 1091, 1252, 1288 |
| Bse21I | CCTNAGG | 1 cut(s) | 2168 |
| BseBI | CCWGG | 4 cut(s) | 442, 1395, 1768, 2503 |
| BseCI | ATCGAT | 1 cut(s) | 2567 |
| BseNI | ACTGG | 4 cut(s) | 960, 1091, 1252, 1288 |
| BseRI | GAGGAG | 1 cut(s) | 1574 |
| BseSI | GKGCMC | 3 cut(s) | 1582, 2269, 2395 |
| BseYI | CCCAGC | 6 cut(s) | 560, 1212, 1493, 1732, 2325, 2439 |
| BsgI | GTGCAG | 2 cut(s) | 1343, 2126 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2567 |
| BshNI | GGYRCC | 5 cut(s) | 617, 1639, 2300, 2390, 2513 |
| BshVI | ATCGAT | 1 cut(s) | 2567 |
| BsiEI | CGRYCG | 1 cut(s) | 2567 |
| BsiHKCI | CYCGRG | 2 cut(s) | 745, 1232 |
| BslFI | GGGAC | 9 cut(s) | 345, 977, 1003, 1276, 1345, 1833, 2024, 2308, 2422 |
| BsmBI | CGTCTC | 3 cut(s) | 346, 1229, 2038 |
| BsmFI | GGGAC | 9 cut(s) | 345, 977, 1003, 1276, 1345, 1833, 2024, 2308, 2422 |
| BsmI | GAATGC | 2 cut(s) | 592, 1681 |
| Bso31I | GGTCTC | 2 cut(s) | 1898, 2516 |
| BsoBI | CYCGRG | 2 cut(s) | 745, 1232 |
| Bsp119I | TTCGAA | 1 cut(s) | 1613 |
| Bsp120I | GGGCCC | 2 cut(s) | 1578, 2265 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1582, 2269, 2395 |
| Bsp143I | GATC | 6 cut(s) | 925, 1036, 1572, 2052, 2551, 2564 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 36, 279, 1247 |
| BspDI | ATCGAT | 1 cut(s) | 2567 |
| BspHI | TCATGA | 1 cut(s) | 1686 |
| BspMAI | CTGCAG | 2 cut(s) | 1369, 2067 |
| BspMI | ACCTGC | 1 cut(s) | 1315 |
| BspOI | GCTAGC | 1 cut(s) | 552 |
| BspPI | GGATC | 1 cut(s) | 1044 |
| BspT104I | TTCGAA | 1 cut(s) | 1613 |
| BspT107I | GGYRCC | 5 cut(s) | 617, 1639, 2300, 2390, 2513 |
| BspTNI | GGTCTC | 2 cut(s) | 1898, 2516 |
| BsrBI | CCGCTC | 4 cut(s) | 1387, 1702, 1942, 2071 |
| BsrFI | RCCGGY | 7 cut(s) | 904, 1315, 1343, 1432, 1468, 1524, 2341 |
| BsrI | ACTGG | 4 cut(s) | 960, 1091, 1252, 1288 |
| BssAI | RCCGGY | 7 cut(s) | 904, 1315, 1343, 1432, 1468, 1524, 2341 |
| BssMI | GATC | 6 cut(s) | 925, 1036, 1572, 2052, 2551, 2564 |
| BssNI | GRCGYC | 4 cut(s) | 1640, 1844, 1977, 2301 |
| BssT1I | CCWWGG | 2 cut(s) | 1953, 2082 |
| Bst2UI | CCWGG | 4 cut(s) | 442, 1395, 1768, 2503 |
| Bst4CI | ACNGT | 3 cut(s) | 827, 1450, 1621 |
| Bst6I | CTCTTC | 3 cut(s) | 1012, 1545, 2172 |
| BstACI | GRCGYC | 4 cut(s) | 1640, 1844, 1977, 2301 |
| BstBAI | YACGTR | 2 cut(s) | 863, 2477 |
| BstBI | TTCGAA | 1 cut(s) | 1613 |
| BstDSI | CCRYGG | 2 cut(s) | 1981, 2187 |
| BstEII | GGTNACC | 1 cut(s) | 2158 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1862, 2063 |
| BstH2I | RGCGCY | 8 cut(s) | 481, 872, 918, 1247, 1365, 1643, 2199, 2304 |
| BstKTI | GATC | 6 cut(s) | 928, 1039, 1575, 2055, 2554, 2567 |
| BstMBI | GATC | 6 cut(s) | 925, 1036, 1572, 2052, 2551, 2564 |
| BstMCI | CGRYCG | 1 cut(s) | 2567 |
| BstNI | CCWGG | 4 cut(s) | 442, 1395, 1768, 2503 |
| BstNSI | RCATGY | 1 cut(s) | 767 |
| BstPI | GGTNACC | 1 cut(s) | 2158 |
| BstSCI | CCNGG | 8 cut(s) | 440, 744, 745, 807, 1393, 1766, 2261, 2501 |
| BstSFI | CTRYAG | 3 cut(s) | 428, 1365, 2063 |
| BstSLI | GKGCMC | 3 cut(s) | 1582, 2269, 2395 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1406 |
| Bsu15I | ATCGAT | 1 cut(s) | 2567 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2168 |
| BsuI | GTATCC | 2 cut(s) | 1383, 2363 |
| BsuTUI | ATCGAT | 1 cut(s) | 2567 |
| BtgI | CCRYGG | 2 cut(s) | 1981, 2187 |
| BtgZI | GCGATG | 2 cut(s) | 534, 2255 |
| BtsI | GCAGTG | 1 cut(s) | 398 |
| BtsIMutI | CAGTG | 2 cut(s) | 398, 1446 |
| BveI | ACCTGC | 1 cut(s) | 1315 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1222, 1858 |
| CciI | TCATGA | 1 cut(s) | 1686 |
| Cfr10I | RCCGGY | 7 cut(s) | 904, 1315, 1343, 1432, 1468, 1524, 2341 |
| Cfr42I | CCGCGG | 2 cut(s) | 1984, 2190 |
| Cfr9I | CCCGGG | 1 cut(s) | 745 |
| ClaI | ATCGAT | 1 cut(s) | 2567 |
| Csp6I | GTAC | 4 cut(s) | 860, 998, 1192, 2184 |
| CviAII | CATG | 5 cut(s) | 386, 764, 785, 1189, 1687 |
| CviQI | GTAC | 4 cut(s) | 860, 998, 1192, 2184 |
| DinI | GGCGCC | 2 cut(s) | 1641, 2302 |
| DpnI | GATC | 6 cut(s) | 927, 1038, 1574, 2054, 2553, 2566 |
| DpnII | GATC | 6 cut(s) | 925, 1036, 1572, 2052, 2551, 2564 |
| DriI | GACNNNNNGTC | 2 cut(s) | 338, 947 |
| EaeI | YGGCCR | 4 cut(s) | 781, 1396, 1950, 1998 |
| Eam1104I | CTCTTC | 3 cut(s) | 1012, 1545, 2172 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 338, 947 |
| EarI | CTCTTC | 3 cut(s) | 1012, 1545, 2172 |
| Eco130I | CCWWGG | 2 cut(s) | 1953, 2082 |
| Eco24I | GRGCYC | 2 cut(s) | 1582, 2269 |
| Eco31I | GGTCTC | 2 cut(s) | 1898, 2516 |
| Eco47I | GGWCC | 5 cut(s) | 964, 1156, 1485, 2436, 2547 |
| Eco47III | AGCGCT | 2 cut(s) | 479, 1363 |
| Eco57I | CTGAAG | 3 cut(s) | 1774, 2309, 2607 |
| Eco72I | CACGTG | 1 cut(s) | 2477 |
| Eco81I | CCTNAGG | 1 cut(s) | 2168 |
| Eco88I | CYCGRG | 2 cut(s) | 745, 1232 |
| Eco91I | GGTNACC | 1 cut(s) | 2158 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1862, 2063 |
| EcoO109I | RGGNCCY | 5 cut(s) | 819, 964, 1578, 2265, 2436 |
| EcoO65I | GGTNACC | 1 cut(s) | 2158 |
| EcoRII | CCWGG | 4 cut(s) | 440, 1393, 1766, 2501 |
| EcoT14I | CCWWGG | 2 cut(s) | 1953, 2082 |
| EcoT38I | GRGCYC | 2 cut(s) | 1582, 2269 |
| EgeI | GGCGCC | 2 cut(s) | 1641, 2302 |
| EheI | GGCGCC | 2 cut(s) | 1641, 2302 |
| ErhI | CCWWGG | 2 cut(s) | 1953, 2082 |
| Esp3I | CGTCTC | 3 cut(s) | 346, 1229, 2038 |
| FaeI | CATG | 5 cut(s) | 389, 767, 788, 1192, 1690 |
| FaqI | GGGAC | 9 cut(s) | 345, 977, 1003, 1276, 1345, 1833, 2024, 2308, 2422 |
| FatI | CATG | 5 cut(s) | 385, 763, 784, 1188, 1686 |
| FblI | GTMKAC | 2 cut(s) | 627, 1105 |
| FriOI | GRGCYC | 2 cut(s) | 1582, 2269 |
| FspBI | CTAG | 5 cut(s) | 413, 483, 513, 549, 2489 |
| GsaI | CCCAGC | 6 cut(s) | 564, 1216, 1497, 1736, 2329, 2443 |
| GsuI | CTGGAG | 3 cut(s) | 1202, 1880, 2406 |
| HaeII | RGCGCY | 8 cut(s) | 481, 872, 918, 1247, 1365, 1643, 2199, 2304 |
| Hin1I | GRCGYC | 4 cut(s) | 1640, 1844, 1977, 2301 |
| Hin1II | CATG | 5 cut(s) | 389, 767, 788, 1192, 1690 |
| HincII | GTYRAC | 3 cut(s) | 628, 664, 1106 |
| HindII | GTYRAC | 3 cut(s) | 628, 664, 1106 |
| HindIII | AAGCTT | 2 cut(s) | 1605, 2093 |
| HpaI | GTTAAC | 1 cut(s) | 664 |
| Hpy166II | GTNNAC | 7 cut(s) | 628, 664, 860, 893, 1000, 1106, 1228 |
| Hpy188I | TCNGA | 7 cut(s) | 613, 1041, 1077, 1084, 1258, 2467, 2551 |
| Hpy188III | TCNNGA | 5 cut(s) | 473, 929, 1181, 1687, 1897 |
| Hpy8I | GTNNAC | 7 cut(s) | 628, 664, 860, 893, 1000, 1106, 1228 |
| Hpy99I | CGWCG | 7 cut(s) | 462, 629, 632, 978, 1547, 1684, 1849 |
| HpyCH4III | ACNGT | 3 cut(s) | 827, 1450, 1621 |
| HpyCH4IV | ACGT | 6 cut(s) | 680, 862, 1682, 1977, 1995, 2476 |
| HpyCH4V | TGCA | 7 cut(s) | 389, 880, 1324, 1367, 1429, 2065, 2107 |
| HpySE526I | ACGT | 6 cut(s) | 680, 862, 1682, 1977, 1995, 2476 |
| Hsp92I | GRCGYC | 4 cut(s) | 1640, 1844, 1977, 2301 |
| Hsp92II | CATG | 5 cut(s) | 389, 767, 788, 1192, 1690 |
| KasI | GGCGCC | 2 cut(s) | 1639, 2300 |
| KflI | GGGWCCC | 1 cut(s) | 2436 |
| KroI | GCCGGC | 4 cut(s) | 904, 1343, 1524, 2341 |
| KroNI | GCCGGC | 4 cut(s) | 906, 1345, 1526, 2343 |
| KspAI | GTTAAC | 1 cut(s) | 664 |
| KspI | CCGCGG | 2 cut(s) | 1984, 2190 |
| Kzo9I | GATC | 6 cut(s) | 925, 1036, 1572, 2052, 2551, 2564 |
| LmnI | GCTCC | 6 cut(s) | 560, 912, 1128, 1384, 2044, 2068 |
| MaeI | CTAG | 5 cut(s) | 413, 483, 513, 549, 2489 |
| MaeII | ACGT | 6 cut(s) | 680, 862, 1682, 1977, 1995, 2476 |
| MaeIII | GTNAC | 9 cut(s) | 50, 131, 212, 293, 1444, 1477, 1964, 2158, 2472 |
| MalI | GATC | 6 cut(s) | 927, 1038, 1574, 2054, 2553, 2566 |
| MbiI | CCGCTC | 4 cut(s) | 1387, 1702, 1942, 2071 |
| MboI | GATC | 6 cut(s) | 925, 1036, 1572, 2052, 2551, 2564 |
| MfeI | CAATTG | 1 cut(s) | 1773 |
| MhlI | GDGCHC | 3 cut(s) | 1582, 2269, 2395 |
| MlsI | TGGCCA | 4 cut(s) | 783, 1398, 1952, 2000 |
| MluCI | AATT | 3 cut(s) | 1773, 1884, 2228 |
| MluI | ACGCGT | 1 cut(s) | 2029 |
| MluNI | TGGCCA | 4 cut(s) | 783, 1398, 1952, 2000 |
| Mly113I | GGCGCC | 2 cut(s) | 1640, 2301 |
| MlyI | GAGTC | 7 cut(s) | 602, 689, 936, 1327, 1655, 2440, 2569 |
| MmeI | TCCRAC | 2 cut(s) | 1491, 2022 |
| Mox20I | TGGCCA | 4 cut(s) | 783, 1398, 1952, 2000 |
| MroNI | GCCGGC | 4 cut(s) | 904, 1343, 1524, 2341 |
| MroXI | GAANNNNTTC | 1 cut(s) | 838 |
| MscI | TGGCCA | 4 cut(s) | 783, 1398, 1952, 2000 |
| MseI | TTAA | 2 cut(s) | 663, 2232 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1131, 1299, 1404, 2282 |
| Msp20I | TGGCCA | 4 cut(s) | 783, 1398, 1952, 2000 |
| MspR9I | CCNGG | 8 cut(s) | 442, 746, 747, 809, 1395, 1768, 2263, 2503 |
| MunI | CAATTG | 1 cut(s) | 1773 |
| Mva1269I | GAATGC | 2 cut(s) | 592, 1681 |
| MvaI | CCWGG | 4 cut(s) | 442, 1395, 1768, 2503 |
| NaeI | GCCGGC | 4 cut(s) | 906, 1345, 1526, 2343 |
| NarI | GGCGCC | 2 cut(s) | 1640, 2301 |
| NciI | CCSGG | 4 cut(s) | 746, 747, 809, 2263 |
| NdeII | GATC | 6 cut(s) | 925, 1036, 1572, 2052, 2551, 2564 |
| NgoMIV | GCCGGC | 4 cut(s) | 904, 1343, 1524, 2341 |
| NheI | GCTAGC | 1 cut(s) | 548 |
| NlaIII | CATG | 5 cut(s) | 389, 767, 788, 1192, 1690 |
| NmeAIII | GCCGAG | 4 cut(s) | 323, 1222, 1696, 1775 |
| NmuCI | GTSAC | 8 cut(s) | 50, 131, 212, 293, 1444, 1477, 1964, 2472 |
| NspI | RCATGY | 1 cut(s) | 767 |
| NspV | TTCGAA | 1 cut(s) | 1613 |
| OliI | CACNNNNGTG | 1 cut(s) | 1404 |
| PagI | TCATGA | 1 cut(s) | 1686 |
| PaqCI | CACCTGC | 1 cut(s) | 1315 |
| PasI | CCCWGGG | 2 cut(s) | 441, 1767 |
| PciI | ACATGT | 1 cut(s) | 763 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 374, 466, 1833 |
| PctI | GAATGC | 2 cut(s) | 592, 1681 |
| PdiI | GCCGGC | 4 cut(s) | 906, 1345, 1526, 2343 |
| PdmI | GAANNNNTTC | 1 cut(s) | 838 |
| PfeI | GAWTC | 4 cut(s) | 365, 739, 932, 1535 |
| PflFI | GACNNNGTC | 4 cut(s) | 48, 129, 210, 291 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 441, 766 |
| Ple19I | CGATCG | 1 cut(s) | 2567 |
| PleI | GAGTC | 7 cut(s) | 601, 689, 936, 1327, 1655, 2440, 2568 |
| PluTI | GGCGCC | 2 cut(s) | 1643, 2304 |
| PmaCI | CACGTG | 1 cut(s) | 2477 |
| PmlI | CACGTG | 1 cut(s) | 2477 |
| PpsI | GAGTC | 7 cut(s) | 601, 689, 936, 1327, 1655, 2440, 2568 |
| Ppu21I | YACGTR | 2 cut(s) | 863, 2477 |
| PpuMI | RGGWCCY | 2 cut(s) | 964, 2436 |
| PscI | ACATGT | 1 cut(s) | 763 |
| Psp5II | RGGWCCY | 2 cut(s) | 964, 2436 |
| Psp6I | CCWGG | 4 cut(s) | 440, 1393, 1766, 2501 |
| PspCI | CACGTG | 1 cut(s) | 2477 |
| PspEI | GGTNACC | 1 cut(s) | 2158 |
| PspFI | CCCAGC | 6 cut(s) | 560, 1212, 1493, 1732, 2325, 2439 |
| PspGI | CCWGG | 4 cut(s) | 440, 1393, 1766, 2501 |
| PspOMI | GGGCCC | 2 cut(s) | 1578, 2265 |
| PspPPI | RGGWCCY | 2 cut(s) | 964, 2436 |
| PstI | CTGCAG | 2 cut(s) | 1369, 2067 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1222, 1858 |
| PsyI | GACNNNGTC | 4 cut(s) | 48, 129, 210, 291 |
| PvuI | CGATCG | 1 cut(s) | 2567 |
| RsaI | GTAC | 4 cut(s) | 861, 999, 1193, 2185 |
| RsaNI | GTAC | 4 cut(s) | 860, 998, 1192, 2184 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1131, 1299, 1404, 2282 |
| SacII | CCGCGG | 2 cut(s) | 1984, 2190 |
| SalI | GTCGAC | 2 cut(s) | 626, 1104 |
| SaqAI | TTAA | 2 cut(s) | 663, 2232 |
| Sau3AI | GATC | 6 cut(s) | 925, 1036, 1572, 2052, 2551, 2564 |
| SchI | GAGTC | 7 cut(s) | 602, 689, 936, 1327, 1655, 2440, 2569 |
| ScrFI | CCNGG | 8 cut(s) | 442, 746, 747, 809, 1395, 1768, 2263, 2503 |
| SduI | GDGCHC | 3 cut(s) | 1582, 2269, 2395 |
| SfcI | CTRYAG | 3 cut(s) | 428, 1365, 2063 |
| SfoI | GGCGCC | 2 cut(s) | 1641, 2302 |
| Sfr303I | CCGCGG | 2 cut(s) | 1984, 2190 |
| SfuI | TTCGAA | 1 cut(s) | 1613 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1468 |
| SgrBI | CCGCGG | 2 cut(s) | 1984, 2190 |
| SgrDI | CGTCGACG | 1 cut(s) | 626 |
| SinI | GGWCC | 5 cut(s) | 964, 1156, 1485, 2436, 2547 |
| SmaI | CCCGGG | 1 cut(s) | 747 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1131, 1299, 1404, 2282 |
| SmlI | CTYRAG | 3 cut(s) | 896, 1335, 2147 |
| SmoI | CTYRAG | 3 cut(s) | 896, 1335, 2147 |
| Sse9I | AATT | 3 cut(s) | 1773, 1884, 2228 |
| SspDI | GGCGCC | 2 cut(s) | 1639, 2300 |
| SspMI | CTAG | 5 cut(s) | 413, 483, 513, 549, 2489 |
| StyD4I | CCNGG | 8 cut(s) | 440, 744, 745, 807, 1393, 1766, 2261, 2501 |
| StyI | CCWWGG | 2 cut(s) | 1953, 2082 |
| TaaI | ACNGT | 3 cut(s) | 827, 1450, 1621 |
| TaiI | ACGT | 6 cut(s) | 683, 865, 1685, 1980, 1998, 2479 |
| TaqII | GACCGA | 1 cut(s) | 2147 |
| TasI | AATT | 3 cut(s) | 1773, 1884, 2228 |
| TfiI | GAWTC | 4 cut(s) | 365, 739, 932, 1535 |
| Tru1I | TTAA | 2 cut(s) | 663, 2232 |
| Tru9I | TTAA | 2 cut(s) | 663, 2232 |
| TscAI | CASTG | 2 cut(s) | 405, 1453 |
| TseFI | GTSAC | 8 cut(s) | 50, 131, 212, 293, 1444, 1477, 1964, 2472 |
| Tsp45I | GTSAC | 8 cut(s) | 50, 131, 212, 293, 1444, 1477, 1964, 2472 |
| TspDTI | ATGAA | 5 cut(s) | 662, 686, 801, 1675, 2040 |
| TspGWI | ACGGA | 1 cut(s) | 366 |
| TspMI | CCCGGG | 1 cut(s) | 745 |
| TspRI | CASTG | 2 cut(s) | 405, 1453 |
| Tth111I | GACNNNGTC | 4 cut(s) | 48, 129, 210, 291 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 441, 766 |
| VpaK11BI | GGWCC | 5 cut(s) | 964, 1156, 1485, 2436, 2547 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1862, 2063 |
| XapI | RAATTY | 2 cut(s) | 1884, 2228 |
| XceI | RCATGY | 1 cut(s) | 767 |
| XmaI | CCCGGG | 1 cut(s) | 745 |
| XmiI | GTMKAC | 2 cut(s) | 627, 1105 |
| XmnI | GAANNNNTTC | 1 cut(s) | 838 |
| XspI | CTAG | 5 cut(s) | 413, 483, 513, 549, 2489 |
| ZraI | GACGTC | 1 cut(s) | 1978 |