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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 717 |
| Acc65I | GGTACC | 1 cut(s) | 991 |
| AccB1I | GGYRCC | 2 cut(s) | 858, 991 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 460 |
| AccBSI | CCGCTC | 2 cut(s) | 1186, 1351 |
| AccI | GTMKAC | 2 cut(s) | 98, 1063 |
| AccII | CGCG | 2 cut(s) | 766, 1467 |
| AclWI | GGATC | 4 cut(s) | 1107, 1120, 1560, 1579 |
| AcsI | RAATTY | 3 cut(s) | 456, 492, 1166 |
| AcuI | CTGAAG | 3 cut(s) | 1034, 1568, 1574 |
| AcyI | GRCGYC | 2 cut(s) | 859, 1328 |
| AdeI | CACNNNGTG | 1 cut(s) | 735 |
| AfaI | GTAC | 5 cut(s) | 603, 993, 1047, 1160, 1448 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 159, 460, 776, 868, 1123, 1186, 1491 |
| AflIII | ACRYGT | 1 cut(s) | 48 |
| AgsI | TTSAA | 1 cut(s) | 343 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1516 |
| AjiI | CACGTC | 1 cut(s) | 49 |
| AjnI | CCWGG | 5 cut(s) | 420, 844, 866, 1119, 1140 |
| Alw26I | GTCTC | 6 cut(s) | 25, 284, 774, 1015, 1097, 1382 |
| AlwI | GGATC | 4 cut(s) | 1107, 1120, 1560, 1579 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1342 |
| Ama87I | CYCGRG | 4 cut(s) | 22, 684, 1012, 1181 |
| AoxI | GGCC | 5 cut(s) | 475, 941, 1177, 1281, 1539 |
| ApeKI | GCWGC | 7 cut(s) | 346, 629, 803, 1306, 1354, 1454, 1624 |
| ApoI | RAATTY | 3 cut(s) | 456, 492, 1166 |
| Asp718I | GGTACC | 1 cut(s) | 991 |
| AspA2I | CCTAGG | 1 cut(s) | 158 |
| AspLEI | GCGC | 7 cut(s) | 263, 543, 613, 642, 768, 861, 1248 |
| AspS9I | GGNCC | 6 cut(s) | 560, 681, 842, 941, 1178, 1495 |
| AsuHPI | GGTGA | 5 cut(s) | 914, 922, 1015, 1193, 1649 |
| AsuNHI | GCTAGC | 1 cut(s) | 5 |
| AvaI | CYCGRG | 4 cut(s) | 22, 684, 1012, 1181 |
| AvaII | GGWCC | 4 cut(s) | 560, 681, 842, 1495 |
| AvrII | CCTAGG | 1 cut(s) | 158 |
| BaeGI | GKGCMC | 1 cut(s) | 927 |
| BamHI | GGATCC | 1 cut(s) | 1112 |
| BanI | GGYRCC | 2 cut(s) | 858, 991 |
| BbvI | GCAGC | 7 cut(s) | 333, 641, 815, 1293, 1366, 1441, 1636 |
| BccI | CCATC | 4 cut(s) | 326, 514, 1265, 1493 |
| BceAI | ACGGC | 1 cut(s) | 1255 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1043, 1077 |
| BciT130I | CCWGG | 5 cut(s) | 422, 846, 868, 1121, 1142 |
| BcoDI | GTCTC | 6 cut(s) | 25, 284, 774, 1015, 1097, 1382 |
| BfaI | CTAG | 7 cut(s) | 6, 131, 159, 201, 267, 713, 1322 |
| BfmI | CTRYAG | 3 cut(s) | 755, 784, 1077 |
| BfoI | RGCGCY | 4 cut(s) | 264, 544, 614, 862 |
| BfuAI | ACCTGC | 1 cut(s) | 717 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 388 |
| BglII | AGATCT | 1 cut(s) | 715 |
| BlnI | CCTAGG | 1 cut(s) | 158 |
| Bme1390I | CCNGG | 5 cut(s) | 422, 846, 868, 1121, 1142 |
| Bme18I | GGWCC | 4 cut(s) | 560, 681, 842, 1495 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1516 |
| BmeT110I | CYCGRG | 4 cut(s) | 22, 684, 1012, 1181 |
| BmgBI | CACGTC | 1 cut(s) | 49 |
| BmgT120I | GGNCC | 6 cut(s) | 560, 681, 842, 941, 1178, 1495 |
| BmiI | GGNNCC | 9 cut(s) | 274, 561, 683, 860, 975, 993, 1114, 1180, 1496 |
| BmrFI | CCNGG | 5 cut(s) | 422, 846, 868, 1121, 1142 |
| BmrI | ACTGGG | 1 cut(s) | 741 |
| BmsI | GCATC | 7 cut(s) | 345, 369, 642, 790, 987, 1300, 1450 |
| BmtI | GCTAGC | 1 cut(s) | 9 |
| BmuI | ACTGGG | 1 cut(s) | 741 |
| BpmI | CTGGAG | 2 cut(s) | 1364, 1547 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1358 |
| BpuEI | CTTGAG | 1 cut(s) | 1253 |
| Bsa29I | ATCGAT | 1 cut(s) | 1260 |
| BsaAI | YACGTR | 1 cut(s) | 605 |
| BsaBI | GATNNNNATC | 2 cut(s) | 524, 1256 |
| BsaHI | GRCGYC | 2 cut(s) | 859, 1328 |
| BsaI | GGTCTC | 3 cut(s) | 25, 1015, 1097 |
| BsaWI | WCCGGW | 1 cut(s) | 548 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 296, 326 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 159, 460, 776, 868, 1123, 1186, 1491 |
| Bse118I | RCCGGY | 2 cut(s) | 182, 899 |
| Bse1I | ACTGG | 8 cut(s) | 298, 383, 736, 837, 860, 1029, 1180, 1563 |
| Bse3DI | GCAATG | 2 cut(s) | 177, 629 |
| Bse8I | GATNNNNATC | 2 cut(s) | 524, 1256 |
| BseBI | CCWGG | 5 cut(s) | 422, 846, 868, 1121, 1142 |
| BseCI | ATCGAT | 1 cut(s) | 1260 |
| BseJI | GATNNNNATC | 2 cut(s) | 524, 1256 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 159, 460, 776, 868, 1123, 1186, 1491 |
| BseMI | GCAATG | 2 cut(s) | 177, 629 |
| BseMII | CTCAG | 2 cut(s) | 1338, 1572 |
| BseNI | ACTGG | 8 cut(s) | 298, 383, 736, 837, 860, 1029, 1180, 1563 |
| BseRI | GAGGAG | 2 cut(s) | 317, 1115 |
| BseSI | GKGCMC | 1 cut(s) | 927 |
| BseXI | GCAGC | 7 cut(s) | 333, 641, 815, 1293, 1366, 1441, 1636 |
| BseYI | CCCAGC | 3 cut(s) | 1216, 1390, 1521 |
| BsgI | GTGCAG | 2 cut(s) | 1148, 1643 |
| Bsh1236I | CGCG | 2 cut(s) | 766, 1467 |
| Bsh1285I | CGRYCG | 1 cut(s) | 897 |
| BshFI | GGCC | 5 cut(s) | 477, 943, 1179, 1283, 1541 |
| BshNI | GGYRCC | 2 cut(s) | 858, 991 |
| BshVI | ATCGAT | 1 cut(s) | 1260 |
| BsiEI | CGRYCG | 1 cut(s) | 897 |
| BsiHKCI | CYCGRG | 4 cut(s) | 22, 684, 1012, 1181 |
| BsiSI | CCGG | 3 cut(s) | 183, 549, 900 |
| BslFI | GGGAC | 2 cut(s) | 1504, 1508 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 159, 460, 776, 868, 1123, 1186, 1491 |
| BsmAI | GTCTC | 6 cut(s) | 25, 284, 774, 1015, 1097, 1382 |
| BsmFI | GGGAC | 2 cut(s) | 1504, 1508 |
| BsnI | GGCC | 5 cut(s) | 477, 943, 1179, 1283, 1541 |
| Bso31I | GGTCTC | 3 cut(s) | 25, 1015, 1097 |
| BsoBI | CYCGRG | 4 cut(s) | 22, 684, 1012, 1181 |
| Bsp1286I | GDGCHC | 1 cut(s) | 927 |
| Bsp143I | GATC | 8 cut(s) | 371, 525, 715, 751, 1112, 1261, 1552, 1584 |
| BspANI | GGCC | 5 cut(s) | 477, 943, 1179, 1283, 1541 |
| BspCNI | CTCAG | 2 cut(s) | 1339, 1573 |
| BspDI | ATCGAT | 1 cut(s) | 1260 |
| BspFNI | CGCG | 2 cut(s) | 766, 1467 |
| BspLI | GGNNCC | 9 cut(s) | 274, 561, 683, 860, 975, 993, 1114, 1180, 1496 |
| BspMAI | CTGCAG | 1 cut(s) | 788 |
| BspMI | ACCTGC | 1 cut(s) | 717 |
| BspOI | GCTAGC | 1 cut(s) | 9 |
| BspPI | GGATC | 4 cut(s) | 1107, 1120, 1560, 1579 |
| BspT107I | GGYRCC | 2 cut(s) | 858, 991 |
| BspTNI | GGTCTC | 3 cut(s) | 25, 1015, 1097 |
| BsrBI | CCGCTC | 2 cut(s) | 1186, 1351 |
| BsrDI | GCAATG | 2 cut(s) | 177, 629 |
| BsrFI | RCCGGY | 2 cut(s) | 182, 899 |
| BsrI | ACTGG | 8 cut(s) | 298, 383, 736, 837, 860, 1029, 1180, 1563 |
| BssAI | RCCGGY | 2 cut(s) | 182, 899 |
| BssMI | GATC | 8 cut(s) | 371, 525, 715, 751, 1112, 1261, 1552, 1584 |
| BssNI | GRCGYC | 2 cut(s) | 859, 1328 |
| BssT1I | CCWWGG | 4 cut(s) | 158, 614, 677, 1437 |
| Bst2UI | CCWGG | 5 cut(s) | 422, 846, 868, 1121, 1142 |
| Bst4CI | ACNGT | 7 cut(s) | 120, 568, 759, 938, 985, 991, 1514 |
| Bst6I | CTCTTC | 2 cut(s) | 657, 1650 |
| BstACI | GRCGYC | 2 cut(s) | 859, 1328 |
| BstBAI | YACGTR | 1 cut(s) | 605 |
| BstDEI | CTNAG | 4 cut(s) | 590, 1347, 1358, 1581 |
| BstDSI | CCRYGG | 3 cut(s) | 567, 937, 1465 |
| BstFNI | CGCG | 2 cut(s) | 766, 1467 |
| BstH2I | RGCGCY | 4 cut(s) | 264, 544, 614, 862 |
| BstHHI | GCGC | 7 cut(s) | 263, 543, 613, 642, 768, 861, 1248 |
| BstKTI | GATC | 8 cut(s) | 374, 528, 718, 754, 1115, 1264, 1555, 1587 |
| BstMAI | GTCTC | 6 cut(s) | 25, 284, 774, 1015, 1097, 1382 |
| BstMBI | GATC | 8 cut(s) | 371, 525, 715, 751, 1112, 1261, 1552, 1584 |
| BstMCI | CGRYCG | 1 cut(s) | 897 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 188, 234, 352, 355, 388, 619, 1460 |
| BstNI | CCWGG | 5 cut(s) | 422, 846, 868, 1121, 1142 |
| BstNSI | RCATGY | 2 cut(s) | 395, 1043 |
| BstSCI | CCNGG | 5 cut(s) | 420, 844, 866, 1119, 1140 |
| BstSFI | CTRYAG | 3 cut(s) | 755, 784, 1077 |
| BstSLI | GKGCMC | 1 cut(s) | 927 |
| BstUI | CGCG | 2 cut(s) | 766, 1467 |
| BstV1I | GCAGC | 7 cut(s) | 333, 641, 815, 1293, 1366, 1441, 1636 |
| BstX2I | RGATCY | 3 cut(s) | 715, 1112, 1584 |
| BstYI | RGATCY | 3 cut(s) | 715, 1112, 1584 |
| Bsu15I | ATCGAT | 1 cut(s) | 1260 |
| BsuRI | GGCC | 5 cut(s) | 477, 943, 1179, 1283, 1541 |
| BsuTUI | ATCGAT | 1 cut(s) | 1260 |
| BtgI | CCRYGG | 3 cut(s) | 567, 937, 1465 |
| BtgZI | GCGATG | 1 cut(s) | 1471 |
| BtrI | CACGTC | 1 cut(s) | 49 |
| BtsI | GCAGTG | 1 cut(s) | 34 |
| BtsIMutI | CAGTG | 7 cut(s) | 34, 116, 390, 729, 844, 1036, 1519 |
| BveI | ACCTGC | 1 cut(s) | 717 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1342 |
| CfoI | GCGC | 7 cut(s) | 263, 543, 613, 642, 768, 861, 1248 |
| Cfr10I | RCCGGY | 2 cut(s) | 182, 899 |
| Cfr13I | GGNCC | 6 cut(s) | 560, 681, 842, 941, 1178, 1495 |
| Cfr42I | CCGCGG | 1 cut(s) | 1468 |
| ClaI | ATCGAT | 1 cut(s) | 1260 |
| CseI | GACGC | 6 cut(s) | 80, 243, 338, 772, 1049, 1317 |
| Csp6I | GTAC | 5 cut(s) | 602, 992, 1046, 1159, 1447 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 919, 954 |
| CviAII | CATG | 7 cut(s) | 104, 188, 318, 392, 1040, 1310, 1537 |
| CviQI | GTAC | 5 cut(s) | 602, 992, 1046, 1159, 1447 |
| DdeI | CTNAG | 4 cut(s) | 590, 1347, 1358, 1581 |
| DinI | GGCGCC | 1 cut(s) | 860 |
| DpnI | GATC | 8 cut(s) | 373, 527, 717, 753, 1114, 1263, 1554, 1586 |
| DpnII | GATC | 8 cut(s) | 371, 525, 715, 751, 1112, 1261, 1552, 1584 |
| DraIII | CACNNNGTG | 1 cut(s) | 735 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1516 |
| Eam1104I | CTCTTC | 2 cut(s) | 657, 1650 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1516 |
| EarI | CTCTTC | 2 cut(s) | 657, 1650 |
| EciI | GGCGGA | 1 cut(s) | 342 |
| Eco130I | CCWWGG | 4 cut(s) | 158, 614, 677, 1437 |
| Eco31I | GGTCTC | 3 cut(s) | 25, 1015, 1097 |
| Eco32I | GATATC | 1 cut(s) | 136 |
| Eco47I | GGWCC | 4 cut(s) | 560, 681, 842, 1495 |
| Eco57I | CTGAAG | 3 cut(s) | 1034, 1568, 1574 |
| Eco88I | CYCGRG | 4 cut(s) | 22, 684, 1012, 1181 |
| EcoO109I | RGGNCCY | 2 cut(s) | 681, 1495 |
| EcoRI | GAATTC | 1 cut(s) | 1166 |
| EcoRII | CCWGG | 5 cut(s) | 420, 844, 866, 1119, 1140 |
| EcoRV | GATATC | 1 cut(s) | 136 |
| EcoT14I | CCWWGG | 4 cut(s) | 158, 614, 677, 1437 |
| EgeI | GGCGCC | 1 cut(s) | 860 |
| EheI | GGCGCC | 1 cut(s) | 860 |
| ErhI | CCWWGG | 4 cut(s) | 158, 614, 677, 1437 |
| FaeI | CATG | 7 cut(s) | 107, 191, 321, 395, 1043, 1313, 1540 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 398, 430 |
| FaqI | GGGAC | 2 cut(s) | 1504, 1508 |
| FatI | CATG | 7 cut(s) | 103, 187, 317, 391, 1039, 1309, 1536 |
| FauI | CCCGC | 7 cut(s) | 290, 625, 873, 934, 1124, 1179, 1472 |
| FblI | GTMKAC | 2 cut(s) | 98, 1063 |
| FspBI | CTAG | 7 cut(s) | 6, 131, 159, 201, 267, 713, 1322 |
| GlaI | GCGC | 7 cut(s) | 262, 542, 612, 641, 767, 860, 1247 |
| GsaI | CCCAGC | 3 cut(s) | 1220, 1394, 1525 |
| GsuI | CTGGAG | 2 cut(s) | 1364, 1547 |
| HaeII | RGCGCY | 4 cut(s) | 264, 544, 614, 862 |
| HaeIII | GGCC | 5 cut(s) | 477, 943, 1179, 1283, 1541 |
| HapII | CCGG | 3 cut(s) | 183, 549, 900 |
| HgaI | GACGC | 6 cut(s) | 80, 243, 338, 772, 1049, 1317 |
| HhaI | GCGC | 7 cut(s) | 263, 543, 613, 642, 768, 861, 1248 |
| Hin1I | GRCGYC | 2 cut(s) | 859, 1328 |
| Hin1II | CATG | 7 cut(s) | 107, 191, 321, 395, 1043, 1313, 1540 |
| Hin6I | GCGC | 7 cut(s) | 261, 541, 611, 640, 766, 859, 1246 |
| HinP1I | GCGC | 7 cut(s) | 261, 541, 611, 640, 766, 859, 1246 |
| HincII | GTYRAC | 2 cut(s) | 762, 1064 |
| HindII | GTYRAC | 2 cut(s) | 762, 1064 |
| HinfI | GANTC | 7 cut(s) | 35, 83, 311, 700, 1085, 1145, 1604 |
| HpaII | CCGG | 3 cut(s) | 183, 549, 900 |
| HphI | GGTGA | 5 cut(s) | 914, 922, 1015, 1193, 1649 |
| Hpy166II | GTNNAC | 4 cut(s) | 99, 602, 762, 1064 |
| Hpy188I | TCNGA | 8 cut(s) | 46, 124, 651, 779, 822, 1165, 1603, 1618 |
| Hpy188III | TCNNGA | 7 cut(s) | 22, 340, 1012, 1171, 1232, 1381, 1573 |
| Hpy8I | GTNNAC | 4 cut(s) | 99, 602, 762, 1064 |
| Hpy99I | CGWCG | 3 cut(s) | 379, 1065, 1333 |
| HpyAV | CCTTC | 7 cut(s) | 568, 822, 901, 964, 1294, 1543, 1598 |
| HpyCH4III | ACNGT | 7 cut(s) | 120, 568, 759, 938, 985, 991, 1514 |
| HpyCH4IV | ACGT | 3 cut(s) | 48, 604, 1419 |
| HpyCH4V | TGCA | 9 cut(s) | 107, 191, 403, 622, 786, 803, 1129, 1309, 1624 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 188, 234, 352, 355, 388, 619, 1460 |
| HpyF3I | CTNAG | 4 cut(s) | 590, 1347, 1358, 1581 |
| HpySE526I | ACGT | 3 cut(s) | 48, 604, 1419 |
| Hsp92I | GRCGYC | 2 cut(s) | 859, 1328 |
| Hsp92II | CATG | 7 cut(s) | 107, 191, 321, 395, 1043, 1313, 1540 |
| HspAI | GCGC | 7 cut(s) | 261, 541, 611, 640, 766, 859, 1246 |
| KasI | GGCGCC | 1 cut(s) | 858 |
| KpnI | GGTACC | 1 cut(s) | 995 |
| KspI | CCGCGG | 1 cut(s) | 1468 |
| Kzo9I | GATC | 8 cut(s) | 371, 525, 715, 751, 1112, 1261, 1552, 1584 |
| LmnI | GCTCC | 3 cut(s) | 883, 1387, 1528 |
| Lsp1109I | GCAGC | 7 cut(s) | 333, 641, 815, 1293, 1366, 1441, 1636 |
| LweI | GCATC | 7 cut(s) | 345, 369, 642, 790, 987, 1300, 1450 |
| MaeI | CTAG | 7 cut(s) | 6, 131, 159, 201, 267, 713, 1322 |
| MaeII | ACGT | 3 cut(s) | 48, 604, 1419 |
| MaeIII | GTNAC | 3 cut(s) | 427, 985, 1021 |
| MalI | GATC | 8 cut(s) | 373, 527, 717, 753, 1114, 1263, 1554, 1586 |
| MbiI | CCGCTC | 2 cut(s) | 1186, 1351 |
| MboI | GATC | 8 cut(s) | 371, 525, 715, 751, 1112, 1261, 1552, 1584 |
| MboII | GAAGA | 3 cut(s) | 674, 709, 1378 |
| MflI | RGATCY | 3 cut(s) | 715, 1112, 1584 |
| MhlI | GDGCHC | 1 cut(s) | 927 |
| MluCI | AATT | 4 cut(s) | 456, 492, 740, 1166 |
| Mly113I | GGCGCC | 1 cut(s) | 859 |
| MlyI | GAGTC | 4 cut(s) | 77, 320, 1139, 1598 |
| MmeI | TCCRAC | 3 cut(s) | 587, 757, 1611 |
| MspA1I | CMGCKG | 7 cut(s) | 278, 632, 1094, 1467, 1525, 1594, 1627 |
| MspI | CCGG | 3 cut(s) | 183, 549, 900 |
| MspR9I | CCNGG | 5 cut(s) | 422, 846, 868, 1121, 1142 |
| MvaI | CCWGG | 5 cut(s) | 422, 846, 868, 1121, 1142 |
| MvnI | CGCG | 2 cut(s) | 766, 1467 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 188, 234, 352, 355, 388, 619, 1460 |
| NarI | GGCGCC | 1 cut(s) | 859 |
| NdeII | GATC | 8 cut(s) | 371, 525, 715, 751, 1112, 1261, 1552, 1584 |
| NheI | GCTAGC | 1 cut(s) | 5 |
| NlaIII | CATG | 7 cut(s) | 107, 191, 321, 395, 1043, 1313, 1540 |
| NlaIV | GGNNCC | 9 cut(s) | 274, 561, 683, 860, 975, 993, 1114, 1180, 1496 |
| NmeAIII | GCCGAG | 2 cut(s) | 925, 1259 |
| NmuCI | GTSAC | 2 cut(s) | 427, 1021 |
| NspI | RCATGY | 2 cut(s) | 395, 1043 |
| PaeI | GCATGC | 1 cut(s) | 395 |
| PaeR7I | CTCGAG | 2 cut(s) | 22, 1012 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 92, 241, 1154 |
| PfeI | GAWTC | 3 cut(s) | 35, 700, 1085 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 460 |
| PleI | GAGTC | 4 cut(s) | 77, 319, 1139, 1598 |
| PluTI | GGCGCC | 1 cut(s) | 862 |
| PpsI | GAGTC | 4 cut(s) | 77, 319, 1139, 1598 |
| Ppu21I | YACGTR | 1 cut(s) | 605 |
| PpuMI | RGGWCCY | 2 cut(s) | 681, 1495 |
| Psp5II | RGGWCCY | 2 cut(s) | 681, 1495 |
| Psp6I | CCWGG | 5 cut(s) | 420, 844, 866, 1119, 1140 |
| PspFI | CCCAGC | 3 cut(s) | 1216, 1390, 1521 |
| PspGI | CCWGG | 5 cut(s) | 420, 844, 866, 1119, 1140 |
| PspN4I | GGNNCC | 9 cut(s) | 274, 561, 683, 860, 975, 993, 1114, 1180, 1496 |
| PspPI | GGNCC | 6 cut(s) | 560, 681, 842, 941, 1178, 1495 |
| PspPPI | RGGWCCY | 2 cut(s) | 681, 1495 |
| PstI | CTGCAG | 1 cut(s) | 788 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1342 |
| PsuI | RGATCY | 3 cut(s) | 715, 1112, 1584 |
| PvuII | CAGCTG | 2 cut(s) | 1525, 1627 |
| RsaI | GTAC | 5 cut(s) | 603, 993, 1047, 1160, 1448 |
| RsaNI | GTAC | 5 cut(s) | 602, 992, 1046, 1159, 1447 |
| SacII | CCGCGG | 1 cut(s) | 1468 |
| SalI | GTCGAC | 1 cut(s) | 1062 |
| Sau3AI | GATC | 8 cut(s) | 371, 525, 715, 751, 1112, 1261, 1552, 1584 |
| Sau96I | GGNCC | 6 cut(s) | 560, 681, 842, 941, 1178, 1495 |
| SchI | GAGTC | 4 cut(s) | 77, 320, 1139, 1598 |
| ScrFI | CCNGG | 5 cut(s) | 422, 846, 868, 1121, 1142 |
| SduI | GDGCHC | 1 cut(s) | 927 |
| SfaNI | GCATC | 7 cut(s) | 345, 369, 642, 790, 987, 1300, 1450 |
| SfcI | CTRYAG | 3 cut(s) | 755, 784, 1077 |
| SfoI | GGCGCC | 1 cut(s) | 860 |
| Sfr274I | CTCGAG | 2 cut(s) | 22, 1012 |
| Sfr303I | CCGCGG | 1 cut(s) | 1468 |
| SgrAI | CRCCGGYG | 1 cut(s) | 899 |
| SgrBI | CCGCGG | 1 cut(s) | 1468 |
| SinI | GGWCC | 4 cut(s) | 560, 681, 842, 1495 |
| SlaI | CTCGAG | 2 cut(s) | 22, 1012 |
| SmlI | CTYRAG | 3 cut(s) | 22, 1012, 1232 |
| SmoI | CTYRAG | 3 cut(s) | 22, 1012, 1232 |
| SphI | GCATGC | 1 cut(s) | 395 |
| Sse9I | AATT | 4 cut(s) | 456, 492, 740, 1166 |
| SspDI | GGCGCC | 1 cut(s) | 858 |
| SspMI | CTAG | 7 cut(s) | 6, 131, 159, 201, 267, 713, 1322 |
| StyD4I | CCNGG | 5 cut(s) | 420, 844, 866, 1119, 1140 |
| StyI | CCWWGG | 4 cut(s) | 158, 614, 677, 1437 |
| TaaI | ACNGT | 7 cut(s) | 120, 568, 759, 938, 985, 991, 1514 |
| TaiI | ACGT | 3 cut(s) | 51, 607, 1422 |
| TasI | AATT | 4 cut(s) | 456, 492, 740, 1166 |
| TatI | WGTACW | 1 cut(s) | 1446 |
| TauI | GCSGC | 8 cut(s) | 266, 358, 1094, 1216, 1328, 1354, 1470, 1565 |
| TfiI | GAWTC | 3 cut(s) | 35, 700, 1085 |
| TscAI | CASTG | 7 cut(s) | 34, 123, 390, 736, 844, 1036, 1519 |
| TseFI | GTSAC | 2 cut(s) | 427, 1021 |
| TseI | GCWGC | 7 cut(s) | 346, 629, 803, 1306, 1354, 1454, 1624 |
| Tsp45I | GTSAC | 2 cut(s) | 427, 1021 |
| TspGWI | ACGGA | 2 cut(s) | 84, 317 |
| TspRI | CASTG | 7 cut(s) | 34, 123, 390, 736, 844, 1036, 1519 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 460 |
| VpaK11BI | GGWCC | 4 cut(s) | 560, 681, 842, 1495 |
| XapI | RAATTY | 3 cut(s) | 456, 492, 1166 |
| XceI | RCATGY | 2 cut(s) | 395, 1043 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 621, 728, 852, 1408 |
| XhoI | CTCGAG | 2 cut(s) | 22, 1012 |
| XmaJI | CCTAGG | 1 cut(s) | 158 |
| XmiI | GTMKAC | 2 cut(s) | 98, 1063 |
| XspI | CTAG | 7 cut(s) | 6, 131, 159, 201, 267, 713, 1322 |