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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 2 cut(s) | 506, 584 |
| AccII | CGCG | 1 cut(s) | 342 |
| AfaI | GTAC | 1 cut(s) | 281 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 218, 352, 353, 464 |
| AgsI | TTSAA | 2 cut(s) | 51, 422 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 391 |
| AjnI | CCWGG | 2 cut(s) | 91, 206 |
| AluBI | AGCT | 5 cut(s) | 54, 60, 449, 512, 554 |
| AluI | AGCT | 5 cut(s) | 54, 60, 449, 512, 554 |
| Alw21I | GWGCWC | 2 cut(s) | 73, 451 |
| Alw26I | GTCTC | 1 cut(s) | 279 |
| Ama87I | CYCGRG | 1 cut(s) | 217 |
| AoxI | GGCC | 4 cut(s) | 195, 209, 427, 484 |
| ApeKI | GCWGC | 3 cut(s) | 113, 242, 509 |
| AspLEI | GCGC | 1 cut(s) | 131 |
| AspS9I | GGNCC | 4 cut(s) | 148, 210, 296, 385 |
| AsuC2I | CCSGG | 2 cut(s) | 218, 219 |
| AsuHPI | GGTGA | 2 cut(s) | 78, 279 |
| AvaI | CYCGRG | 1 cut(s) | 217 |
| AvaII | GGWCC | 3 cut(s) | 148, 296, 385 |
| BanII | GRGCYC | 1 cut(s) | 451 |
| BauI | CACGAG | 2 cut(s) | 25, 544 |
| Bbv12I | GWGCWC | 2 cut(s) | 73, 451 |
| BbvI | GCAGC | 3 cut(s) | 125, 229, 521 |
| BccI | CCATC | 2 cut(s) | 375, 573 |
| BceAI | ACGGC | 2 cut(s) | 255, 401 |
| BciT130I | CCWGG | 2 cut(s) | 93, 208 |
| BcnI | CCSGG | 2 cut(s) | 218, 219 |
| BcoDI | GTCTC | 1 cut(s) | 279 |
| BfaI | CTAG | 1 cut(s) | 608 |
| BfmI | CTRYAG | 2 cut(s) | 243, 405 |
| BfoI | RGCGCY | 1 cut(s) | 132 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 492 |
| BisI | GCNGC | 4 cut(s) | 114, 243, 507, 510 |
| BlpI | GCTNAGC | 1 cut(s) | 513 |
| BlsI | GCNGC | 4 cut(s) | 115, 244, 508, 511 |
| Bme1390I | CCNGG | 4 cut(s) | 93, 208, 218, 219 |
| Bme18I | GGWCC | 3 cut(s) | 148, 296, 385 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 391 |
| BmeT110I | CYCGRG | 1 cut(s) | 217 |
| BmgT120I | GGNCC | 4 cut(s) | 148, 210, 296, 385 |
| BmiI | GGNNCC | 7 cut(s) | 90, 149, 150, 181, 297, 325, 386 |
| BmrFI | CCNGG | 4 cut(s) | 93, 208, 218, 219 |
| BmsI | GCATC | 1 cut(s) | 521 |
| BpmI | CTGGAG | 1 cut(s) | 76 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 513 |
| BpuEI | CTTGAG | 1 cut(s) | 600 |
| BpuMI | CCSGG | 2 cut(s) | 218, 219 |
| BsaI | GGTCTC | 1 cut(s) | 279 |
| BsaJI | CCNNGG | 2 cut(s) | 217, 535 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 218, 352, 353, 464 |
| Bse1I | ACTGG | 5 cut(s) | 42, 159, 281, 475, 602 |
| BseBI | CCWGG | 2 cut(s) | 93, 208 |
| BseDI | CCNNGG | 2 cut(s) | 217, 535 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 218, 352, 353, 464 |
| BseMII | CTCAG | 3 cut(s) | 153, 495, 504 |
| BseNI | ACTGG | 5 cut(s) | 42, 159, 281, 475, 602 |
| BseRI | GAGGAG | 2 cut(s) | 276, 537 |
| BseXI | GCAGC | 3 cut(s) | 125, 229, 521 |
| BseYI | CCCAGC | 3 cut(s) | 151, 348, 362 |
| BsgI | GTGCAG | 1 cut(s) | 132 |
| Bsh1236I | CGCG | 1 cut(s) | 342 |
| BshFI | GGCC | 4 cut(s) | 197, 211, 429, 486 |
| BsiHKAI | GWGCWC | 2 cut(s) | 73, 451 |
| BsiHKCI | CYCGRG | 1 cut(s) | 217 |
| BsiSI | CCGG | 1 cut(s) | 218 |
| BslFI | GGGAC | 2 cut(s) | 134, 398 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 218, 352, 353, 464 |
| BsmAI | GTCTC | 1 cut(s) | 279 |
| BsmFI | GGGAC | 2 cut(s) | 134, 398 |
| BsnI | GGCC | 4 cut(s) | 197, 211, 429, 486 |
| Bso31I | GGTCTC | 1 cut(s) | 279 |
| BsoBI | CYCGRG | 1 cut(s) | 217 |
| Bsp1286I | GDGCHC | 2 cut(s) | 73, 451 |
| Bsp143I | GATC | 1 cut(s) | 590 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 513 |
| BspANI | GGCC | 4 cut(s) | 197, 211, 429, 486 |
| BspCNI | CTCAG | 3 cut(s) | 152, 494, 505 |
| BspFNI | CGCG | 1 cut(s) | 342 |
| BspLI | GGNNCC | 7 cut(s) | 90, 149, 150, 181, 297, 325, 386 |
| BspMAI | CTGCAG | 1 cut(s) | 247 |
| BspTNI | GGTCTC | 1 cut(s) | 279 |
| BsrBI | CCGCTC | 2 cut(s) | 506, 584 |
| BsrI | ACTGG | 5 cut(s) | 42, 159, 281, 475, 602 |
| BssECI | CCNNGG | 2 cut(s) | 217, 535 |
| BssMI | GATC | 1 cut(s) | 590 |
| BssSI | CACGAG | 2 cut(s) | 25, 544 |
| Bst2BI | CACGAG | 2 cut(s) | 25, 544 |
| Bst2UI | CCWGG | 2 cut(s) | 93, 208 |
| Bst4CI | ACNGT | 2 cut(s) | 335, 401 |
| BstC8I | GCNNGC | 4 cut(s) | 62, 83, 133, 552 |
| BstDEI | CTNAG | 3 cut(s) | 139, 481, 513 |
| BstFNI | CGCG | 1 cut(s) | 342 |
| BstH2I | RGCGCY | 1 cut(s) | 132 |
| BstHHI | GCGC | 1 cut(s) | 131 |
| BstKTI | GATC | 1 cut(s) | 593 |
| BstMAI | GTCTC | 1 cut(s) | 279 |
| BstMBI | GATC | 1 cut(s) | 590 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 9, 102, 492, 540 |
| BstNI | CCWGG | 2 cut(s) | 93, 208 |
| BstSCI | CCNGG | 4 cut(s) | 91, 206, 216, 217 |
| BstSFI | CTRYAG | 2 cut(s) | 243, 405 |
| BstUI | CGCG | 1 cut(s) | 342 |
| BstV1I | GCAGC | 3 cut(s) | 125, 229, 521 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 81 |
| BsuRI | GGCC | 4 cut(s) | 197, 211, 429, 486 |
| BtsIMutI | CAGTG | 2 cut(s) | 274, 340 |
| Cac8I | GCNNGC | 4 cut(s) | 62, 83, 133, 552 |
| CfoI | GCGC | 1 cut(s) | 131 |
| Cfr13I | GGNCC | 4 cut(s) | 148, 210, 296, 385 |
| Cfr9I | CCCGGG | 1 cut(s) | 217 |
| CseI | GACGC | 1 cut(s) | 549 |
| Csp6I | GTAC | 1 cut(s) | 280 |
| CviAII | CATG | 1 cut(s) | 75 |
| CviQI | GTAC | 1 cut(s) | 280 |
| DdeI | CTNAG | 3 cut(s) | 139, 481, 513 |
| DpnI | GATC | 1 cut(s) | 592 |
| DpnII | GATC | 1 cut(s) | 590 |
| DriI | GACNNNNNGTC | 1 cut(s) | 391 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 391 |
| EciI | GGCGGA | 3 cut(s) | 288, 316, 388 |
| Ecl136II | GAGCTC | 1 cut(s) | 449 |
| Eco147I | AGGCCT | 1 cut(s) | 197 |
| Eco24I | GRGCYC | 1 cut(s) | 451 |
| Eco31I | GGTCTC | 1 cut(s) | 279 |
| Eco47I | GGWCC | 3 cut(s) | 148, 296, 385 |
| Eco53kI | GAGCTC | 1 cut(s) | 449 |
| Eco88I | CYCGRG | 1 cut(s) | 217 |
| EcoICRI | GAGCTC | 1 cut(s) | 449 |
| EcoO109I | RGGNCCY | 2 cut(s) | 148, 385 |
| EcoRII | CCWGG | 2 cut(s) | 91, 206 |
| EcoT38I | GRGCYC | 1 cut(s) | 451 |
| FaeI | CATG | 1 cut(s) | 78 |
| FaiI | YATR | 3 cut(s) | 76, 99, 291 |
| FaqI | GGGAC | 2 cut(s) | 134, 398 |
| FatI | CATG | 1 cut(s) | 74 |
| FauI | CCCGC | 4 cut(s) | 78, 164, 345, 454 |
| Fnu4HI | GCNGC | 4 cut(s) | 114, 243, 507, 510 |
| FriOI | GRGCYC | 1 cut(s) | 451 |
| Fsp4HI | GCNGC | 4 cut(s) | 114, 243, 507, 510 |
| FspBI | CTAG | 1 cut(s) | 608 |
| GlaI | GCGC | 1 cut(s) | 130 |
| GluI | GCNGC | 4 cut(s) | 114, 243, 507, 510 |
| GsaI | CCCAGC | 3 cut(s) | 155, 352, 366 |
| GsuI | CTGGAG | 1 cut(s) | 76 |
| HaeII | RGCGCY | 1 cut(s) | 132 |
| HaeIII | GGCC | 4 cut(s) | 197, 211, 429, 486 |
| HapII | CCGG | 1 cut(s) | 218 |
| HgaI | GACGC | 1 cut(s) | 549 |
| HhaI | GCGC | 1 cut(s) | 131 |
| Hin1II | CATG | 1 cut(s) | 78 |
| Hin6I | GCGC | 1 cut(s) | 129 |
| HinP1I | GCGC | 1 cut(s) | 129 |
| HinfI | GANTC | 2 cut(s) | 367, 477 |
| HpaII | CCGG | 1 cut(s) | 218 |
| HphI | GGTGA | 2 cut(s) | 78, 279 |
| Hpy188I | TCNGA | 2 cut(s) | 446, 539 |
| Hpy99I | CGWCG | 1 cut(s) | 36 |
| HpyAV | CCTTC | 1 cut(s) | 398 |
| HpyCH4III | ACNGT | 2 cut(s) | 335, 401 |
| HpyCH4V | TGCA | 4 cut(s) | 3, 113, 230, 245 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 9, 102, 492, 540 |
| HpyF3I | CTNAG | 3 cut(s) | 139, 481, 513 |
| Hsp92II | CATG | 1 cut(s) | 78 |
| HspAI | GCGC | 1 cut(s) | 129 |
| KflI | GGGWCCC | 1 cut(s) | 148 |
| Kzo9I | GATC | 1 cut(s) | 590 |
| LmnI | GCTCC | 6 cut(s) | 57, 88, 179, 209, 329, 503 |
| Lsp1109I | GCAGC | 3 cut(s) | 125, 229, 521 |
| LweI | GCATC | 1 cut(s) | 521 |
| MaeI | CTAG | 1 cut(s) | 608 |
| MaeIII | GTNAC | 3 cut(s) | 161, 188, 335 |
| MalI | GATC | 1 cut(s) | 592 |
| MbiI | CCGCTC | 2 cut(s) | 506, 584 |
| MboI | GATC | 1 cut(s) | 590 |
| MboII | GAAGA | 1 cut(s) | 320 |
| MfeI | CAATTG | 1 cut(s) | 166 |
| MhlI | GDGCHC | 2 cut(s) | 73, 451 |
| MluCI | AATT | 1 cut(s) | 166 |
| MmeI | TCCRAC | 2 cut(s) | 157, 420 |
| MnlI | CCTC | 7 cut(s) | 138, 187, 254, 257, 352, 515, 545 |
| MspA1I | CMGCKG | 2 cut(s) | 352, 512 |
| MspI | CCGG | 1 cut(s) | 218 |
| MspR9I | CCNGG | 4 cut(s) | 93, 208, 218, 219 |
| MunI | CAATTG | 1 cut(s) | 166 |
| MvaI | CCWGG | 2 cut(s) | 93, 208 |
| MvnI | CGCG | 1 cut(s) | 342 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 9, 102, 492, 540 |
| NciI | CCSGG | 2 cut(s) | 218, 219 |
| NdeII | GATC | 1 cut(s) | 590 |
| NlaIII | CATG | 1 cut(s) | 78 |
| NlaIV | GGNNCC | 7 cut(s) | 90, 149, 150, 181, 297, 325, 386 |
| NmeAIII | GCCGAG | 2 cut(s) | 208, 405 |
| NmuCI | GTSAC | 2 cut(s) | 188, 335 |
| PceI | AGGCCT | 1 cut(s) | 197 |
| PfeI | GAWTC | 2 cut(s) | 367, 477 |
| PkrI | GCNGC | 4 cut(s) | 115, 244, 508, 511 |
| PpuMI | RGGWCCY | 2 cut(s) | 148, 385 |
| Psp124BI | GAGCTC | 1 cut(s) | 451 |
| Psp5II | RGGWCCY | 2 cut(s) | 148, 385 |
| Psp6I | CCWGG | 2 cut(s) | 91, 206 |
| PspFI | CCCAGC | 3 cut(s) | 151, 348, 362 |
| PspGI | CCWGG | 2 cut(s) | 91, 206 |
| PspN4I | GGNNCC | 7 cut(s) | 90, 149, 150, 181, 297, 325, 386 |
| PspPI | GGNCC | 4 cut(s) | 148, 210, 296, 385 |
| PspPPI | RGGWCCY | 2 cut(s) | 148, 385 |
| PstI | CTGCAG | 1 cut(s) | 247 |
| PvuII | CAGCTG | 1 cut(s) | 512 |
| RsaI | GTAC | 1 cut(s) | 281 |
| RsaNI | GTAC | 1 cut(s) | 280 |
| SacI | GAGCTC | 1 cut(s) | 451 |
| SatI | GCNGC | 4 cut(s) | 114, 243, 507, 510 |
| Sau3AI | GATC | 1 cut(s) | 590 |
| Sau96I | GGNCC | 4 cut(s) | 148, 210, 296, 385 |
| ScrFI | CCNGG | 4 cut(s) | 93, 208, 218, 219 |
| SduI | GDGCHC | 2 cut(s) | 73, 451 |
| SetI | ASST | 7 cut(s) | 56, 62, 390, 451, 514, 556, 580 |
| SfaNI | GCATC | 1 cut(s) | 521 |
| SfcI | CTRYAG | 2 cut(s) | 243, 405 |
| SinI | GGWCC | 3 cut(s) | 148, 296, 385 |
| SmaI | CCCGGG | 1 cut(s) | 219 |
| SmlI | CTYRAG | 1 cut(s) | 579 |
| SmoI | CTYRAG | 1 cut(s) | 579 |
| Sse9I | AATT | 1 cut(s) | 166 |
| SseBI | AGGCCT | 1 cut(s) | 197 |
| SspMI | CTAG | 1 cut(s) | 608 |
| SstI | GAGCTC | 1 cut(s) | 451 |
| StuI | AGGCCT | 1 cut(s) | 197 |
| StyD4I | CCNGG | 4 cut(s) | 91, 206, 216, 217 |
| TaaI | ACNGT | 2 cut(s) | 335, 401 |
| TaqI | TCGA | 1 cut(s) | 451 |
| TasI | AATT | 1 cut(s) | 166 |
| TauI | GCSGC | 1 cut(s) | 509 |
| TfiI | GAWTC | 2 cut(s) | 367, 477 |
| TscAI | CASTG | 2 cut(s) | 281, 340 |
| TseFI | GTSAC | 2 cut(s) | 188, 335 |
| TseI | GCWGC | 3 cut(s) | 113, 242, 509 |
| Tsp45I | GTSAC | 2 cut(s) | 188, 335 |
| TspGWI | ACGGA | 2 cut(s) | 49, 381 |
| TspMI | CCCGGG | 1 cut(s) | 217 |
| TspRI | CASTG | 2 cut(s) | 281, 340 |
| VpaK11BI | GGWCC | 3 cut(s) | 148, 296, 385 |
| XmaI | CCCGGG | 1 cut(s) | 217 |
| XspI | CTAG | 1 cut(s) | 608 |