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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 81 |
| Acc65I | GGTACC | 1 cut(s) | 424 |
| AccB1I | GGYRCC | 5 cut(s) | 424, 463, 676, 1337, 1430 |
| AccBSI | CCGCTC | 5 cut(s) | 441, 739, 979, 1108, 1437 |
| AccII | CGCG | 9 cut(s) | 19, 21, 36, 168, 799, 1010, 1229, 1424, 1510 |
| AclWI | GGATC | 4 cut(s) | 53, 198, 800, 1483 |
| AcoI | YGGCCR | 1 cut(s) | 1230 |
| AcsI | RAATTY | 1 cut(s) | 927 |
| AcuI | CTGAAG | 3 cut(s) | 1233, 1346, 1641 |
| AcyI | GRCGYC | 4 cut(s) | 677, 982, 1014, 1338 |
| AfaI | GTAC | 3 cut(s) | 227, 426, 1268 |
| AflIII | ACRYGT | 1 cut(s) | 867 |
| AgeI | ACCGGT | 1 cut(s) | 460 |
| AgsI | TTSAA | 4 cut(s) | 140, 875, 1244, 1252 |
| AjnI | CCWGG | 5 cut(s) | 213, 434, 485, 612, 1521 |
| Alw21I | GWGCWC | 1 cut(s) | 1393 |
| Alw26I | GTCTC | 5 cut(s) | 212, 263, 470, 1041, 1075 |
| AlwI | GGATC | 4 cut(s) | 53, 198, 800, 1483 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 404, 895 |
| Ama87I | CYCGRG | 4 cut(s) | 266, 1017, 1536, 1575 |
| AoxI | GGCC | 8 cut(s) | 243, 343, 393, 488, 633, 781, 1230, 1302 |
| ApaI | GGGCCC | 1 cut(s) | 1306 |
| ApoI | RAATTY | 1 cut(s) | 927 |
| AsiGI | ACCGGT | 1 cut(s) | 460 |
| Asp718I | GGTACC | 1 cut(s) | 424 |
| AspLEI | GCGC | 9 cut(s) | 21, 280, 547, 561, 679, 801, 1340, 1460, 1531 |
| AspS9I | GGNCC | 8 cut(s) | 244, 393, 443, 616, 634, 1302, 1303, 1581 |
| AsuC2I | CCSGG | 5 cut(s) | 150, 1537, 1538, 1576, 1577 |
| AsuHPI | GGTGA | 4 cut(s) | 271, 347, 475, 746 |
| AsuII | TTCGAA | 1 cut(s) | 177 |
| AvaI | CYCGRG | 4 cut(s) | 266, 1017, 1536, 1575 |
| AvaII | GGWCC | 3 cut(s) | 443, 616, 1581 |
| BaeGI | GKGCMC | 2 cut(s) | 1306, 1435 |
| BanI | GGYRCC | 5 cut(s) | 424, 463, 676, 1337, 1430 |
| BanII | GRGCYC | 2 cut(s) | 370, 1306 |
| BauI | CACGAG | 1 cut(s) | 517 |
| BbsI | GAAGAC | 1 cut(s) | 257 |
| Bbv12I | GWGCWC | 1 cut(s) | 1393 |
| BccI | CCATC | 6 cut(s) | 181, 336, 725, 762, 967, 1349 |
| BceAI | ACGGC | 6 cut(s) | 358, 644, 782, 822, 1223, 1561 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 390, 424, 777, 811 |
| BciT130I | CCWGG | 5 cut(s) | 215, 436, 487, 614, 1523 |
| BciVI | GTATCC | 1 cut(s) | 1213 |
| BcnI | CCSGG | 5 cut(s) | 150, 1537, 1538, 1576, 1577 |
| BcoDI | GTCTC | 5 cut(s) | 212, 263, 470, 1041, 1075 |
| BfaI | CTAG | 4 cut(s) | 770, 785, 1184, 1307 |
| BfmI | CTRYAG | 2 cut(s) | 826, 1100 |
| BfoI | RGCGCY | 5 cut(s) | 281, 548, 562, 680, 1341 |
| BfuAI | ACCTGC | 1 cut(s) | 81 |
| BfuI | GTATCC | 1 cut(s) | 1213 |
| BlpI | GCTNAGC | 1 cut(s) | 281 |
| Bme18I | GGWCC | 3 cut(s) | 443, 616, 1581 |
| BmeT110I | CYCGRG | 4 cut(s) | 266, 1017, 1536, 1575 |
| BmgT120I | GGNCC | 8 cut(s) | 244, 393, 443, 616, 634, 1302, 1303, 1581 |
| BmrI | ACTGGG | 1 cut(s) | 1489 |
| BmuI | ACTGGG | 1 cut(s) | 1489 |
| BpiI | GAAGAC | 1 cut(s) | 257 |
| BpmI | CTGGAG | 4 cut(s) | 236, 494, 569, 917 |
| Bpu10I | CCTNAGC | 2 cut(s) | 911, 1438 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 281 |
| Bpu14I | TTCGAA | 1 cut(s) | 177 |
| BpuMI | CCSGG | 5 cut(s) | 150, 1537, 1538, 1576, 1577 |
| BsaHI | GRCGYC | 4 cut(s) | 677, 982, 1014, 1338 |
| BsaI | GGTCTC | 2 cut(s) | 212, 470 |
| BsaWI | WCCGGW | 2 cut(s) | 298, 460 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 209, 239, 1055, 1085 |
| Bse118I | RCCGGY | 5 cut(s) | 460, 505, 561, 1378, 1465 |
| Bse1I | ACTGG | 8 cut(s) | 100, 163, 261, 279, 608, 687, 817, 1495 |
| BseBI | CCWGG | 5 cut(s) | 215, 436, 487, 614, 1523 |
| BseGI | GGATG | 2 cut(s) | 142, 604 |
| BseMII | CTCAG | 5 cut(s) | 272, 699, 1196, 1275, 1452 |
| BseNI | ACTGG | 8 cut(s) | 100, 163, 261, 279, 608, 687, 817, 1495 |
| BseRI | GAGGAG | 2 cut(s) | 41, 512 |
| BseSI | GKGCMC | 2 cut(s) | 1306, 1435 |
| BseX3I | CGGCCG | 1 cut(s) | 1230 |
| BseYI | CCCAGC | 3 cut(s) | 99, 1298, 1362 |
| BsgI | GTGCAG | 3 cut(s) | 1163, 1196, 1628 |
| Bsh1236I | CGCG | 9 cut(s) | 19, 21, 36, 168, 799, 1010, 1229, 1424, 1510 |
| Bsh1285I | CGRYCG | 3 cut(s) | 1066, 1233, 1466 |
| BshFI | GGCC | 8 cut(s) | 245, 345, 395, 490, 635, 783, 1232, 1304 |
| BshNI | GGYRCC | 5 cut(s) | 424, 463, 676, 1337, 1430 |
| BshTI | ACCGGT | 1 cut(s) | 460 |
| BsiEI | CGRYCG | 3 cut(s) | 1066, 1233, 1466 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1393 |
| BsiHKCI | CYCGRG | 4 cut(s) | 266, 1017, 1536, 1575 |
| BslFI | GGGAC | 3 cut(s) | 429, 1345, 1551 |
| BsmAI | GTCTC | 5 cut(s) | 212, 263, 470, 1041, 1075 |
| BsmFI | GGGAC | 3 cut(s) | 429, 1345, 1551 |
| BsmI | GAATGC | 1 cut(s) | 1247 |
| BsnI | GGCC | 8 cut(s) | 245, 345, 395, 490, 635, 783, 1232, 1304 |
| Bso31I | GGTCTC | 2 cut(s) | 212, 470 |
| BsoBI | CYCGRG | 4 cut(s) | 266, 1017, 1536, 1575 |
| Bsp119I | TTCGAA | 1 cut(s) | 177 |
| Bsp120I | GGGCCC | 1 cut(s) | 1302 |
| Bsp1286I | GDGCHC | 4 cut(s) | 370, 1306, 1393, 1435 |
| Bsp143I | GATC | 6 cut(s) | 45, 115, 190, 567, 792, 1475 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 281 |
| Bsp68I | TCGCGA | 1 cut(s) | 168 |
| BspANI | GGCC | 8 cut(s) | 245, 345, 395, 490, 635, 783, 1232, 1304 |
| BspCNI | CTCAG | 5 cut(s) | 273, 700, 1197, 1276, 1451 |
| BspFNI | CGCG | 9 cut(s) | 19, 21, 36, 168, 799, 1010, 1229, 1424, 1510 |
| BspHI | TCATGA | 1 cut(s) | 723 |
| BspMI | ACCTGC | 1 cut(s) | 81 |
| BspPI | GGATC | 4 cut(s) | 53, 198, 800, 1483 |
| BspT104I | TTCGAA | 1 cut(s) | 177 |
| BspT107I | GGYRCC | 5 cut(s) | 424, 463, 676, 1337, 1430 |
| BspTNI | GGTCTC | 2 cut(s) | 212, 470 |
| BsrBI | CCGCTC | 5 cut(s) | 441, 739, 979, 1108, 1437 |
| BsrFI | RCCGGY | 5 cut(s) | 460, 505, 561, 1378, 1465 |
| BsrI | ACTGG | 8 cut(s) | 100, 163, 261, 279, 608, 687, 817, 1495 |
| BssAI | RCCGGY | 5 cut(s) | 460, 505, 561, 1378, 1465 |
| BssMI | GATC | 6 cut(s) | 45, 115, 190, 567, 792, 1475 |
| BssNI | GRCGYC | 4 cut(s) | 677, 982, 1014, 1338 |
| BssSI | CACGAG | 1 cut(s) | 517 |
| BssT1I | CCWWGG | 2 cut(s) | 491, 1119 |
| Bst2BI | CACGAG | 1 cut(s) | 517 |
| Bst2UI | CCWGG | 5 cut(s) | 215, 436, 487, 614, 1523 |
| Bst4CI | ACNGT | 5 cut(s) | 68, 481, 1033, 1067, 1257 |
| Bst6I | CTCTTC | 2 cut(s) | 18, 755 |
| BstACI | GRCGYC | 4 cut(s) | 677, 982, 1014, 1338 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 404 |
| BstBI | TTCGAA | 1 cut(s) | 177 |
| BstDEI | CTNAG | 7 cut(s) | 281, 708, 911, 1205, 1284, 1383, 1438 |
| BstDSI | CCRYGG | 4 cut(s) | 372, 660, 1227, 1422 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1100 |
| BstF5I | GGATG | 2 cut(s) | 142, 604 |
| BstFNI | CGCG | 9 cut(s) | 19, 21, 36, 168, 799, 1010, 1229, 1424, 1510 |
| BstH2I | RGCGCY | 5 cut(s) | 281, 548, 562, 680, 1341 |
| BstHHI | GCGC | 9 cut(s) | 21, 280, 547, 561, 679, 801, 1340, 1460, 1531 |
| BstKTI | GATC | 6 cut(s) | 48, 118, 193, 570, 795, 1478 |
| BstMAI | GTCTC | 5 cut(s) | 212, 263, 470, 1041, 1075 |
| BstMBI | GATC | 6 cut(s) | 45, 115, 190, 567, 792, 1475 |
| BstMCI | CGRYCG | 3 cut(s) | 1066, 1233, 1466 |
| BstNI | CCWGG | 5 cut(s) | 215, 436, 487, 614, 1523 |
| BstNSI | RCATGY | 4 cut(s) | 871, 1324, 1375, 1619 |
| BstSFI | CTRYAG | 2 cut(s) | 826, 1100 |
| BstSLI | GKGCMC | 2 cut(s) | 1306, 1435 |
| BstUI | CGCG | 9 cut(s) | 19, 21, 36, 168, 799, 1010, 1229, 1424, 1510 |
| BstV2I | GAAGAC | 1 cut(s) | 257 |
| BstX2I | RGATCY | 1 cut(s) | 792 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 694 |
| BstYI | RGATCY | 1 cut(s) | 792 |
| BstZI | CGGCCG | 1 cut(s) | 1230 |
| BsuI | GTATCC | 1 cut(s) | 1213 |
| BsuRI | GGCC | 8 cut(s) | 245, 345, 395, 490, 635, 783, 1232, 1304 |
| BtgI | CCRYGG | 4 cut(s) | 372, 660, 1227, 1422 |
| BtgZI | GCGATG | 2 cut(s) | 200, 1075 |
| BtsCI | GGATG | 2 cut(s) | 142, 604 |
| BtsIMutI | CAGTG | 4 cut(s) | 156, 254, 272, 694 |
| BtuMI | TCGCGA | 1 cut(s) | 168 |
| BveI | ACCTGC | 1 cut(s) | 81 |
| CaiI | CAGNNNCTG | 2 cut(s) | 404, 895 |
| CciI | TCATGA | 1 cut(s) | 723 |
| CciNI | GCGGCCGC | 1 cut(s) | 1230 |
| CfoI | GCGC | 9 cut(s) | 21, 280, 547, 561, 679, 801, 1340, 1460, 1531 |
| Cfr10I | RCCGGY | 5 cut(s) | 460, 505, 561, 1378, 1465 |
| Cfr13I | GGNCC | 8 cut(s) | 244, 393, 443, 616, 634, 1302, 1303, 1581 |
| Cfr42I | CCGCGG | 2 cut(s) | 1230, 1425 |
| Cfr9I | CCCGGG | 2 cut(s) | 1536, 1575 |
| CseI | GACGC | 4 cut(s) | 179, 971, 1022, 1347 |
| Csp6I | GTAC | 3 cut(s) | 226, 425, 1267 |
| CspAI | ACCGGT | 1 cut(s) | 460 |
| CviAII | CATG | 6 cut(s) | 223, 724, 868, 1321, 1372, 1616 |
| CviQI | GTAC | 3 cut(s) | 226, 425, 1267 |
| DdeI | CTNAG | 7 cut(s) | 281, 708, 911, 1205, 1284, 1383, 1438 |
| DinI | GGCGCC | 2 cut(s) | 678, 1339 |
| DpnI | GATC | 6 cut(s) | 47, 117, 192, 569, 794, 1477 |
| DpnII | GATC | 6 cut(s) | 45, 115, 190, 567, 792, 1475 |
| EaeI | YGGCCR | 1 cut(s) | 1230 |
| EagI | CGGCCG | 1 cut(s) | 1230 |
| Eam1104I | CTCTTC | 2 cut(s) | 18, 755 |
| EarI | CTCTTC | 2 cut(s) | 18, 755 |
| EciI | GGCGGA | 8 cut(s) | 76, 135, 608, 962, 1277, 1383, 1484, 1556 |
| EclXI | CGGCCG | 1 cut(s) | 1230 |
| Eco130I | CCWWGG | 2 cut(s) | 491, 1119 |
| Eco24I | GRGCYC | 2 cut(s) | 370, 1306 |
| Eco31I | GGTCTC | 2 cut(s) | 212, 470 |
| Eco47I | GGWCC | 3 cut(s) | 443, 616, 1581 |
| Eco52I | CGGCCG | 1 cut(s) | 1230 |
| Eco57I | CTGAAG | 3 cut(s) | 1233, 1346, 1641 |
| Eco88I | CYCGRG | 4 cut(s) | 266, 1017, 1536, 1575 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1100 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1302, 1303, 1581 |
| EcoRII | CCWGG | 5 cut(s) | 213, 434, 485, 612, 1521 |
| EcoT14I | CCWWGG | 2 cut(s) | 491, 1119 |
| EcoT38I | GRGCYC | 2 cut(s) | 370, 1306 |
| EgeI | GGCGCC | 2 cut(s) | 678, 1339 |
| EheI | GGCGCC | 2 cut(s) | 678, 1339 |
| ErhI | CCWWGG | 2 cut(s) | 491, 1119 |
| FaeI | CATG | 6 cut(s) | 226, 727, 871, 1324, 1375, 1619 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 894, 926 |
| FaqI | GGGAC | 3 cut(s) | 429, 1345, 1551 |
| FatI | CATG | 6 cut(s) | 222, 723, 867, 1320, 1371, 1615 |
| FauI | CCCGC | 8 cut(s) | 374, 436, 644, 688, 732, 1140, 1429, 1442 |
| FokI | GGATG | 2 cut(s) | 129, 611 |
| FriOI | GRGCYC | 2 cut(s) | 370, 1306 |
| FspBI | CTAG | 4 cut(s) | 770, 785, 1184, 1307 |
| GlaI | GCGC | 9 cut(s) | 20, 279, 546, 560, 678, 800, 1339, 1459, 1530 |
| GsaI | CCCAGC | 3 cut(s) | 103, 1302, 1366 |
| GsuI | CTGGAG | 4 cut(s) | 236, 494, 569, 917 |
| HaeII | RGCGCY | 5 cut(s) | 281, 548, 562, 680, 1341 |
| HaeIII | GGCC | 8 cut(s) | 245, 345, 395, 490, 635, 783, 1232, 1304 |
| HgaI | GACGC | 4 cut(s) | 179, 971, 1022, 1347 |
| HhaI | GCGC | 9 cut(s) | 21, 280, 547, 561, 679, 801, 1340, 1460, 1531 |
| Hin1I | GRCGYC | 4 cut(s) | 677, 982, 1014, 1338 |
| Hin1II | CATG | 6 cut(s) | 226, 727, 871, 1324, 1375, 1619 |
| Hin6I | GCGC | 9 cut(s) | 19, 278, 545, 559, 677, 799, 1338, 1458, 1529 |
| HinP1I | GCGC | 9 cut(s) | 19, 278, 545, 559, 677, 799, 1338, 1458, 1529 |
| HinfI | GANTC | 6 cut(s) | 287, 698, 774, 1151, 1286, 1486 |
| HphI | GGTGA | 4 cut(s) | 271, 347, 475, 746 |
| Hpy166II | GTNNAC | 1 cut(s) | 262 |
| Hpy188I | TCNGA | 7 cut(s) | 50, 86, 93, 292, 1206, 1281, 1501 |
| Hpy188III | TCNNGA | 4 cut(s) | 167, 724, 934, 1351 |
| Hpy8I | GTNNAC | 1 cut(s) | 262 |
| Hpy99I | CGWCG | 3 cut(s) | 173, 344, 652 |
| HpyCH4III | ACNGT | 5 cut(s) | 68, 481, 1033, 1067, 1257 |
| HpyCH4V | TGCA | 4 cut(s) | 862, 1144, 1177, 1609 |
| HpyF3I | CTNAG | 7 cut(s) | 281, 708, 911, 1205, 1284, 1383, 1438 |
| Hsp92I | GRCGYC | 4 cut(s) | 677, 982, 1014, 1338 |
| Hsp92II | CATG | 6 cut(s) | 226, 727, 871, 1324, 1375, 1619 |
| HspAI | GCGC | 9 cut(s) | 19, 278, 545, 559, 677, 799, 1338, 1458, 1529 |
| KasI | GGCGCC | 2 cut(s) | 676, 1337 |
| KpnI | GGTACC | 1 cut(s) | 428 |
| KroI | GCCGGC | 3 cut(s) | 505, 561, 1378 |
| KroNI | GCCGGC | 3 cut(s) | 507, 563, 1380 |
| KspI | CCGCGG | 2 cut(s) | 1230, 1425 |
| Kzo9I | GATC | 6 cut(s) | 45, 115, 190, 567, 792, 1475 |
| MaeI | CTAG | 4 cut(s) | 770, 785, 1184, 1307 |
| MaeIII | GTNAC | 5 cut(s) | 68, 335, 481, 689, 1001 |
| MalI | GATC | 6 cut(s) | 47, 117, 192, 569, 794, 1477 |
| MbiI | CCGCTC | 5 cut(s) | 441, 739, 979, 1108, 1437 |
| MboI | GATC | 6 cut(s) | 45, 115, 190, 567, 792, 1475 |
| MboII | GAAGA | 7 cut(s) | 35, 262, 640, 742, 895, 982, 1640 |
| MfeI | CAATTG | 1 cut(s) | 1602 |
| MflI | RGATCY | 1 cut(s) | 792 |
| MhlI | GDGCHC | 4 cut(s) | 370, 1306, 1393, 1435 |
| MluCI | AATT | 2 cut(s) | 927, 1602 |
| Mly113I | GGCGCC | 2 cut(s) | 677, 1338 |
| MlyI | GAGTC | 5 cut(s) | 296, 692, 1160, 1295, 1480 |
| MmeI | TCCRAC | 2 cut(s) | 109, 1479 |
| MreI | CGCCGGCG | 1 cut(s) | 505 |
| MroNI | GCCGGC | 3 cut(s) | 505, 561, 1378 |
| MslI | CAYNNNNRTG | 3 cut(s) | 333, 1139, 1319 |
| MspA1I | CMGCKG | 8 cut(s) | 121, 404, 472, 1147, 1180, 1229, 1235, 1424 |
| MunI | CAATTG | 1 cut(s) | 1602 |
| Mva1269I | GAATGC | 1 cut(s) | 1247 |
| MvaI | CCWGG | 5 cut(s) | 215, 436, 487, 614, 1523 |
| MvnI | CGCG | 9 cut(s) | 19, 21, 36, 168, 799, 1010, 1229, 1424, 1510 |
| NaeI | GCCGGC | 3 cut(s) | 507, 563, 1380 |
| NarI | GGCGCC | 2 cut(s) | 677, 1338 |
| NciI | CCSGG | 5 cut(s) | 150, 1537, 1538, 1576, 1577 |
| NdeII | GATC | 6 cut(s) | 45, 115, 190, 567, 792, 1475 |
| NgoMIV | GCCGGC | 3 cut(s) | 505, 561, 1378 |
| NlaIII | CATG | 6 cut(s) | 226, 727, 871, 1324, 1375, 1619 |
| NmeAIII | GCCGAG | 3 cut(s) | 256, 812, 1472 |
| NmuCI | GTSAC | 4 cut(s) | 335, 481, 689, 1001 |
| NotI | GCGGCCGC | 1 cut(s) | 1230 |
| NruI | TCGCGA | 1 cut(s) | 168 |
| NspI | RCATGY | 4 cut(s) | 871, 1324, 1375, 1619 |
| NspV | TTCGAA | 1 cut(s) | 177 |
| PaeI | GCATGC | 1 cut(s) | 1619 |
| PagI | TCATGA | 1 cut(s) | 723 |
| PciI | ACATGT | 1 cut(s) | 867 |
| PctI | GAATGC | 1 cut(s) | 1247 |
| PdiI | GCCGGC | 3 cut(s) | 507, 563, 1380 |
| PfeI | GAWTC | 1 cut(s) | 774 |
| PflFI | GACNNNGTC | 2 cut(s) | 1067, 1285 |
| PfoI | TCCNGGA | 1 cut(s) | 213 |
| PinAI | ACCGGT | 1 cut(s) | 460 |
| PleI | GAGTC | 5 cut(s) | 295, 692, 1159, 1294, 1480 |
| PluTI | GGCGCC | 2 cut(s) | 680, 1341 |
| PpsI | GAGTC | 5 cut(s) | 295, 692, 1159, 1294, 1480 |
| PpuMI | RGGWCCY | 1 cut(s) | 1581 |
| PscI | ACATGT | 1 cut(s) | 867 |
| Psp5II | RGGWCCY | 1 cut(s) | 1581 |
| Psp6I | CCWGG | 5 cut(s) | 213, 434, 485, 612, 1521 |
| PspFI | CCCAGC | 3 cut(s) | 99, 1298, 1362 |
| PspGI | CCWGG | 5 cut(s) | 213, 434, 485, 612, 1521 |
| PspOMI | GGGCCC | 1 cut(s) | 1302 |
| PspPI | GGNCC | 8 cut(s) | 244, 393, 443, 616, 634, 1302, 1303, 1581 |
| PspPPI | RGGWCCY | 1 cut(s) | 1581 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 704, 736 |
| PstNI | CAGNNNCTG | 2 cut(s) | 404, 895 |
| PsuI | RGATCY | 1 cut(s) | 792 |
| PsyI | GACNNNGTC | 2 cut(s) | 1067, 1285 |
| PvuII | CAGCTG | 1 cut(s) | 404 |
| RruI | TCGCGA | 1 cut(s) | 168 |
| RsaI | GTAC | 3 cut(s) | 227, 426, 1268 |
| RsaNI | GTAC | 3 cut(s) | 226, 425, 1267 |
| RseI | CAYNNNNRTG | 3 cut(s) | 333, 1139, 1319 |
| SacII | CCGCGG | 2 cut(s) | 1230, 1425 |
| Sau3AI | GATC | 6 cut(s) | 45, 115, 190, 567, 792, 1475 |
| Sau96I | GGNCC | 8 cut(s) | 244, 393, 443, 616, 634, 1302, 1303, 1581 |
| SchI | GAGTC | 5 cut(s) | 296, 692, 1160, 1295, 1480 |
| SduI | GDGCHC | 4 cut(s) | 370, 1306, 1393, 1435 |
| SfcI | CTRYAG | 2 cut(s) | 826, 1100 |
| SfoI | GGCGCC | 2 cut(s) | 678, 1339 |
| Sfr303I | CCGCGG | 2 cut(s) | 1230, 1425 |
| SfuI | TTCGAA | 1 cut(s) | 177 |
| SgrAI | CRCCGGYG | 1 cut(s) | 505 |
| SgrBI | CCGCGG | 2 cut(s) | 1230, 1425 |
| SinI | GGWCC | 3 cut(s) | 443, 616, 1581 |
| SmaI | CCCGGG | 2 cut(s) | 1538, 1577 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 333, 1139, 1319 |
| SphI | GCATGC | 1 cut(s) | 1619 |
| Sse9I | AATT | 2 cut(s) | 927, 1602 |
| SspDI | GGCGCC | 2 cut(s) | 676, 1337 |
| SspMI | CTAG | 4 cut(s) | 770, 785, 1184, 1307 |
| StyI | CCWWGG | 2 cut(s) | 491, 1119 |
| TaaI | ACNGT | 5 cut(s) | 68, 481, 1033, 1067, 1257 |
| TaqI | TCGA | 7 cut(s) | 114, 177, 570, 650, 900, 1344, 1635 |
| TasI | AATT | 2 cut(s) | 927, 1602 |
| TatI | WGTACW | 1 cut(s) | 1266 |
| TfiI | GAWTC | 1 cut(s) | 774 |
| TscAI | CASTG | 4 cut(s) | 163, 261, 279, 694 |
| TseFI | GTSAC | 4 cut(s) | 335, 481, 689, 1001 |
| Tsp45I | GTSAC | 4 cut(s) | 335, 481, 689, 1001 |
| TspDTI | ATGAA | 1 cut(s) | 712 |
| TspGWI | ACGGA | 4 cut(s) | 58, 124, 636, 1184 |
| TspMI | CCCGGG | 2 cut(s) | 1536, 1575 |
| TspRI | CASTG | 4 cut(s) | 163, 261, 279, 694 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1067, 1285 |
| VpaK11BI | GGWCC | 3 cut(s) | 443, 616, 1581 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1100 |
| XapI | RAATTY | 1 cut(s) | 927 |
| XceI | RCATGY | 4 cut(s) | 871, 1324, 1375, 1619 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 329 |
| XmaI | CCCGGG | 2 cut(s) | 1536, 1575 |
| XspI | CTAG | 4 cut(s) | 770, 785, 1184, 1307 |