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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1039 |
| Acc16I | TGCGCA | 1 cut(s) | 1621 |
| Acc36I | ACCTGC | 2 cut(s) | 870, 1039 |
| Acc65I | GGTACC | 1 cut(s) | 1946 |
| AccB1I | GGYRCC | 6 cut(s) | 637, 742, 1697, 1733, 1823, 1946 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 159, 1510, 1743 |
| AccBSI | CCGCTC | 6 cut(s) | 785, 1246, 1273, 1441, 1462, 1830 |
| AccII | CGCG | 6 cut(s) | 921, 937, 1084, 1223, 1565, 1766 |
| AclWI | GGATC | 5 cut(s) | 1232, 1452, 1528, 1554, 1957 |
| AcoI | YGGCCR | 1 cut(s) | 1923 |
| AcsI | RAATTY | 3 cut(s) | 1547, 1577, 1902 |
| AcyI | GRCGYC | 6 cut(s) | 187, 638, 1132, 1734, 1754, 1958 |
| AdeI | CACNNNGTG | 1 cut(s) | 888 |
| AfaI | GTAC | 5 cut(s) | 94, 561, 985, 1664, 1948 |
| AflII | CTTAAG | 1 cut(s) | 1448 |
| AflIII | ACRYGT | 2 cut(s) | 48, 610 |
| AgsI | TTSAA | 6 cut(s) | 485, 511, 669, 1342, 1583, 1648 |
| AjiI | CACGTC | 1 cut(s) | 49 |
| AjnI | CCWGG | 4 cut(s) | 317, 501, 677, 1046 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1241, 1273 |
| AluBI | AGCT | 9 cut(s) | 371, 1106, 1360, 1474, 1490, 1507, 1570, 1617, 1817 |
| AluI | AGCT | 9 cut(s) | 371, 1106, 1360, 1474, 1490, 1507, 1570, 1617, 1817 |
| Alw21I | GWGCWC | 1 cut(s) | 1799 |
| Alw26I | GTCTC | 5 cut(s) | 678, 1072, 1124, 1331, 1361 |
| AlwI | GGATC | 5 cut(s) | 1232, 1452, 1528, 1554, 1957 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1031 |
| Ama87I | CYCGRG | 3 cut(s) | 22, 706, 1241 |
| AoxI | GGCC | 6 cut(s) | 489, 542, 1187, 1518, 1626, 1923 |
| ApeKI | GCWGC | 7 cut(s) | 371, 1103, 1163, 1540, 1570, 1617, 1703 |
| ApoI | RAATTY | 3 cut(s) | 1547, 1577, 1902 |
| Asp718I | GGTACC | 1 cut(s) | 1946 |
| AspLEI | GCGC | 5 cut(s) | 640, 923, 1380, 1622, 1736 |
| AspS9I | GGNCC | 8 cut(s) | 150, 359, 542, 1050, 1187, 1299, 1501, 1770 |
| AsuC2I | CCSGG | 2 cut(s) | 886, 2005 |
| AsuHPI | GGTGA | 7 cut(s) | 430, 874, 924, 1166, 1331, 1966, 2039 |
| AsuII | TTCGAA | 1 cut(s) | 123 |
| AsuNHI | GCTAGC | 1 cut(s) | 247 |
| AvaI | CYCGRG | 3 cut(s) | 22, 706, 1241 |
| AvaII | GGWCC | 6 cut(s) | 150, 359, 1050, 1299, 1501, 1770 |
| AxyI | CCTNAGG | 1 cut(s) | 1308 |
| BaeGI | GKGCMC | 2 cut(s) | 745, 1828 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1938, 1971 |
| BanI | GGYRCC | 6 cut(s) | 637, 742, 1697, 1733, 1823, 1946 |
| BbsI | GAAGAC | 2 cut(s) | 391, 782 |
| Bbv12I | GWGCWC | 1 cut(s) | 1799 |
| BbvCI | CCTCAGC | 1 cut(s) | 1818 |
| BbvI | GCAGC | 7 cut(s) | 358, 1115, 1175, 1552, 1557, 1604, 1690 |
| BccI | CCATC | 5 cut(s) | 500, 731, 1289, 1442, 1672 |
| BceAI | ACGGC | 3 cut(s) | 349, 908, 1619 |
| BciT130I | CCWGG | 4 cut(s) | 319, 503, 679, 1048 |
| BcnI | CCSGG | 2 cut(s) | 886, 2005 |
| BcoDI | GTCTC | 5 cut(s) | 678, 1072, 1124, 1331, 1361 |
| BfmI | CTRYAG | 3 cut(s) | 105, 1032, 1538 |
| BfoI | RGCGCY | 3 cut(s) | 641, 1381, 1737 |
| BfrI | CTTAAG | 1 cut(s) | 1448 |
| BfuAI | ACCTGC | 2 cut(s) | 870, 1039 |
| BglII | AGATCT | 1 cut(s) | 18 |
| BlpI | GCTNAGC | 1 cut(s) | 56 |
| Bme1390I | CCNGG | 6 cut(s) | 319, 503, 679, 886, 1048, 2005 |
| Bme18I | GGWCC | 6 cut(s) | 150, 359, 1050, 1299, 1501, 1770 |
| BmeT110I | CYCGRG | 3 cut(s) | 22, 706, 1241 |
| BmgBI | CACGTC | 1 cut(s) | 49 |
| BmgT120I | GGNCC | 8 cut(s) | 150, 359, 542, 1050, 1187, 1299, 1501, 1770 |
| BmrFI | CCNGG | 6 cut(s) | 319, 503, 679, 886, 1048, 2005 |
| BmsI | GCATC | 3 cut(s) | 804, 1390, 1399 |
| BmtI | GCTAGC | 1 cut(s) | 251 |
| BpiI | GAAGAC | 2 cut(s) | 391, 782 |
| BpmI | CTGGAG | 3 cut(s) | 747, 1030, 1106 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1107, 1818, 1831 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 56 |
| Bpu14I | TTCGAA | 1 cut(s) | 123 |
| BpuEI | CTTGAG | 2 cut(s) | 1056, 1313 |
| BpuMI | CCSGG | 2 cut(s) | 886, 2005 |
| BsaHI | GRCGYC | 6 cut(s) | 187, 638, 1132, 1734, 1754, 1958 |
| BsaI | GGTCTC | 3 cut(s) | 1072, 1124, 1361 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1241, 1271, 1789, 1819 |
| Bse1I | ACTGG | 1 cut(s) | 1748 |
| Bse21I | CCTNAGG | 1 cut(s) | 1308 |
| Bse3DI | GCAATG | 1 cut(s) | 177 |
| BseBI | CCWGG | 4 cut(s) | 319, 503, 679, 1048 |
| BseGI | GGATG | 5 cut(s) | 78, 220, 1300, 1752, 1870 |
| BseMI | GCAATG | 1 cut(s) | 177 |
| BseMII | CTCAG | 7 cut(s) | 70, 899, 1121, 1299, 1809, 1845, 1886 |
| BseNI | ACTGG | 1 cut(s) | 1748 |
| BseRI | GAGGAG | 1 cut(s) | 1172 |
| BseSI | GKGCMC | 2 cut(s) | 745, 1828 |
| BseXI | GCAGC | 7 cut(s) | 358, 1115, 1175, 1552, 1557, 1604, 1690 |
| BsgI | GTGCAG | 1 cut(s) | 1196 |
| Bsh1236I | CGCG | 6 cut(s) | 921, 937, 1084, 1223, 1565, 1766 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1975 |
| BshFI | GGCC | 6 cut(s) | 491, 544, 1189, 1520, 1628, 1925 |
| BshNI | GGYRCC | 6 cut(s) | 637, 742, 1697, 1733, 1823, 1946 |
| BsiEI | CGRYCG | 1 cut(s) | 1975 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1799 |
| BsiHKCI | CYCGRG | 3 cut(s) | 22, 706, 1241 |
| BsiSI | CCGG | 3 cut(s) | 885, 1859, 2004 |
| BslFI | GGGAC | 2 cut(s) | 1312, 1741 |
| BsmAI | GTCTC | 5 cut(s) | 678, 1072, 1124, 1331, 1361 |
| BsmFI | GGGAC | 2 cut(s) | 1312, 1741 |
| BsnI | GGCC | 6 cut(s) | 491, 544, 1189, 1520, 1628, 1925 |
| Bso31I | GGTCTC | 3 cut(s) | 1072, 1124, 1361 |
| BsoBI | CYCGRG | 3 cut(s) | 22, 706, 1241 |
| Bsp119I | TTCGAA | 1 cut(s) | 123 |
| Bsp1286I | GDGCHC | 3 cut(s) | 745, 1799, 1828 |
| Bsp143I | GATC | 8 cut(s) | 18, 868, 1237, 1444, 1533, 1559, 1962, 1972 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 56 |
| Bsp19I | CCATGG | 1 cut(s) | 1950 |
| BspANI | GGCC | 6 cut(s) | 491, 544, 1189, 1520, 1628, 1925 |
| BspCNI | CTCAG | 7 cut(s) | 69, 900, 1120, 1300, 1810, 1844, 1885 |
| BspFNI | CGCG | 6 cut(s) | 921, 937, 1084, 1223, 1565, 1766 |
| BspMAI | CTGCAG | 3 cut(s) | 109, 1036, 1542 |
| BspMI | ACCTGC | 2 cut(s) | 870, 1039 |
| BspOI | GCTAGC | 1 cut(s) | 251 |
| BspPI | GGATC | 5 cut(s) | 1232, 1452, 1528, 1554, 1957 |
| BspQI | GCTCTTC | 2 cut(s) | 807, 1607 |
| BspT104I | TTCGAA | 1 cut(s) | 123 |
| BspT107I | GGYRCC | 6 cut(s) | 637, 742, 1697, 1733, 1823, 1946 |
| BspTI | CTTAAG | 1 cut(s) | 1448 |
| BspTNI | GGTCTC | 3 cut(s) | 1072, 1124, 1361 |
| BsrBI | CCGCTC | 6 cut(s) | 785, 1246, 1273, 1441, 1462, 1830 |
| BsrDI | GCAATG | 1 cut(s) | 177 |
| BsrI | ACTGG | 1 cut(s) | 1748 |
| BssMI | GATC | 8 cut(s) | 18, 868, 1237, 1444, 1533, 1559, 1962, 1972 |
| BssNI | GRCGYC | 6 cut(s) | 187, 638, 1132, 1734, 1754, 1958 |
| BssT1I | CCWWGG | 3 cut(s) | 158, 1773, 1950 |
| Bst2UI | CCWGG | 4 cut(s) | 319, 503, 679, 1048 |
| Bst4CI | ACNGT | 7 cut(s) | 120, 379, 386, 481, 857, 983, 1801 |
| Bst6I | CTCTTC | 3 cut(s) | 807, 1121, 1607 |
| BstACI | GRCGYC | 6 cut(s) | 187, 638, 1132, 1734, 1754, 1958 |
| BstAFI | CTTAAG | 1 cut(s) | 1448 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1409 |
| BstBI | TTCGAA | 1 cut(s) | 123 |
| BstDEI | CTNAG | 7 cut(s) | 56, 908, 1107, 1308, 1818, 1831, 1872 |
| BstDSI | CCRYGG | 5 cut(s) | 1082, 1563, 1635, 1764, 1950 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1541 |
| BstF5I | GGATG | 5 cut(s) | 78, 220, 1300, 1752, 1870 |
| BstFNI | CGCG | 6 cut(s) | 921, 937, 1084, 1223, 1565, 1766 |
| BstH2I | RGCGCY | 3 cut(s) | 641, 1381, 1737 |
| BstHHI | GCGC | 5 cut(s) | 640, 923, 1380, 1622, 1736 |
| BstKTI | GATC | 8 cut(s) | 21, 871, 1240, 1447, 1536, 1562, 1965, 1975 |
| BstMAI | GTCTC | 5 cut(s) | 678, 1072, 1124, 1331, 1361 |
| BstMBI | GATC | 8 cut(s) | 18, 868, 1237, 1444, 1533, 1559, 1962, 1972 |
| BstMCI | CGRYCG | 1 cut(s) | 1975 |
| BstNI | CCWGG | 4 cut(s) | 319, 503, 679, 1048 |
| BstNSI | RCATGY | 2 cut(s) | 614, 1720 |
| BstSCI | CCNGG | 6 cut(s) | 317, 501, 677, 884, 1046, 2003 |
| BstSFI | CTRYAG | 3 cut(s) | 105, 1032, 1538 |
| BstSLI | GKGCMC | 2 cut(s) | 745, 1828 |
| BstUI | CGCG | 6 cut(s) | 921, 937, 1084, 1223, 1565, 1766 |
| BstV1I | GCAGC | 7 cut(s) | 358, 1115, 1175, 1552, 1557, 1604, 1690 |
| BstV2I | GAAGAC | 2 cut(s) | 391, 782 |
| BstX2I | RGATCY | 4 cut(s) | 18, 1444, 1533, 1559 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1943 |
| BstYI | RGATCY | 4 cut(s) | 18, 1444, 1533, 1559 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1308 |
| BsuRI | GGCC | 6 cut(s) | 491, 544, 1189, 1520, 1628, 1925 |
| BtgI | CCRYGG | 5 cut(s) | 1082, 1563, 1635, 1764, 1950 |
| BtgZI | GCGATG | 1 cut(s) | 1413 |
| BtrI | CACGTC | 1 cut(s) | 49 |
| BtsCI | GGATG | 5 cut(s) | 78, 220, 1300, 1752, 1870 |
| BtsI | GCAGTG | 4 cut(s) | 34, 336, 824, 2037 |
| BtsIMutI | CAGTG | 7 cut(s) | 34, 116, 336, 438, 824, 1797, 2037 |
| BveI | ACCTGC | 2 cut(s) | 870, 1039 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1031 |
| CfoI | GCGC | 5 cut(s) | 640, 923, 1380, 1622, 1736 |
| Cfr13I | GGNCC | 8 cut(s) | 150, 359, 542, 1050, 1187, 1299, 1501, 1770 |
| Cfr42I | CCGCGG | 3 cut(s) | 1085, 1566, 1767 |
| CseI | GACGC | 7 cut(s) | 176, 731, 1121, 1417, 1743, 1844, 1966 |
| Csp6I | GTAC | 5 cut(s) | 93, 560, 984, 1663, 1947 |
| CviAII | CATG | 8 cut(s) | 61, 611, 826, 1717, 1910, 1921, 1951, 2055 |
| CviQI | GTAC | 5 cut(s) | 93, 560, 984, 1663, 1947 |
| DdeI | CTNAG | 7 cut(s) | 56, 908, 1107, 1308, 1818, 1831, 1872 |
| DinI | GGCGCC | 2 cut(s) | 639, 1735 |
| DpnI | GATC | 8 cut(s) | 20, 870, 1239, 1446, 1535, 1561, 1964, 1974 |
| DpnII | GATC | 8 cut(s) | 18, 868, 1237, 1444, 1533, 1559, 1962, 1972 |
| DraIII | CACNNNGTG | 1 cut(s) | 888 |
| EaeI | YGGCCR | 1 cut(s) | 1923 |
| Eam1104I | CTCTTC | 3 cut(s) | 807, 1121, 1607 |
| EarI | CTCTTC | 3 cut(s) | 807, 1121, 1607 |
| EciI | GGCGGA | 4 cut(s) | 80, 392, 488, 1877 |
| Eco130I | CCWWGG | 3 cut(s) | 158, 1773, 1950 |
| Eco31I | GGTCTC | 3 cut(s) | 1072, 1124, 1361 |
| Eco47I | GGWCC | 6 cut(s) | 150, 359, 1050, 1299, 1501, 1770 |
| Eco81I | CCTNAGG | 1 cut(s) | 1308 |
| Eco88I | CYCGRG | 3 cut(s) | 22, 706, 1241 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1541 |
| EcoO109I | RGGNCCY | 3 cut(s) | 542, 1299, 1770 |
| EcoRII | CCWGG | 4 cut(s) | 317, 501, 677, 1046 |
| EcoT14I | CCWWGG | 3 cut(s) | 158, 1773, 1950 |
| EgeI | GGCGCC | 2 cut(s) | 639, 1735 |
| EheI | GGCGCC | 2 cut(s) | 639, 1735 |
| ErhI | CCWWGG | 3 cut(s) | 158, 1773, 1950 |
| FaeI | CATG | 8 cut(s) | 64, 614, 829, 1720, 1913, 1924, 1954, 2058 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 383, 415 |
| FaqI | GGGAC | 2 cut(s) | 1312, 1741 |
| FatI | CATG | 8 cut(s) | 60, 610, 825, 1716, 1909, 1920, 1950, 2054 |
| FokI | GGATG | 5 cut(s) | 85, 227, 1307, 1759, 1877 |
| FspI | TGCGCA | 1 cut(s) | 1621 |
| GlaI | GCGC | 5 cut(s) | 639, 922, 1379, 1621, 1735 |
| GsuI | CTGGAG | 3 cut(s) | 747, 1030, 1106 |
| HaeII | RGCGCY | 3 cut(s) | 641, 1381, 1737 |
| HaeIII | GGCC | 6 cut(s) | 491, 544, 1189, 1520, 1628, 1925 |
| HapII | CCGG | 3 cut(s) | 885, 1859, 2004 |
| HgaI | GACGC | 7 cut(s) | 176, 731, 1121, 1417, 1743, 1844, 1966 |
| HhaI | GCGC | 5 cut(s) | 640, 923, 1380, 1622, 1736 |
| Hin1I | GRCGYC | 6 cut(s) | 187, 638, 1132, 1734, 1754, 1958 |
| Hin1II | CATG | 8 cut(s) | 64, 614, 829, 1720, 1913, 1924, 1954, 2058 |
| Hin6I | GCGC | 5 cut(s) | 638, 921, 1378, 1620, 1734 |
| HinP1I | GCGC | 5 cut(s) | 638, 921, 1378, 1620, 1734 |
| HincII | GTYRAC | 3 cut(s) | 315, 382, 915 |
| HindII | GTYRAC | 3 cut(s) | 315, 382, 915 |
| HpaII | CCGG | 3 cut(s) | 885, 1859, 2004 |
| HphI | GGTGA | 7 cut(s) | 430, 874, 924, 1166, 1331, 1966, 2039 |
| Hpy166II | GTNNAC | 4 cut(s) | 315, 382, 616, 915 |
| Hpy188I | TCNGA | 7 cut(s) | 46, 766, 909, 1137, 1559, 1900, 1984 |
| Hpy188III | TCNNGA | 8 cut(s) | 22, 485, 956, 1073, 1123, 1231, 1241, 1330 |
| Hpy8I | GTNNAC | 4 cut(s) | 315, 382, 616, 915 |
| Hpy99I | CGWCG | 1 cut(s) | 1433 |
| HpyAV | CCTTC | 9 cut(s) | 416, 442, 533, 1336, 1510, 1519, 1684, 1723, 1744 |
| HpyCH4III | ACNGT | 7 cut(s) | 120, 379, 386, 481, 857, 983, 1801 |
| HpyCH4IV | ACGT | 2 cut(s) | 48, 1143 |
| HpyF3I | CTNAG | 7 cut(s) | 56, 908, 1107, 1308, 1818, 1831, 1872 |
| HpySE526I | ACGT | 2 cut(s) | 48, 1143 |
| Hsp92I | GRCGYC | 6 cut(s) | 187, 638, 1132, 1734, 1754, 1958 |
| Hsp92II | CATG | 8 cut(s) | 64, 614, 829, 1720, 1913, 1924, 1954, 2058 |
| HspAI | GCGC | 5 cut(s) | 638, 921, 1378, 1620, 1734 |
| KasI | GGCGCC | 2 cut(s) | 637, 1733 |
| KpnI | GGTACC | 1 cut(s) | 1950 |
| KspI | CCGCGG | 3 cut(s) | 1085, 1566, 1767 |
| Kzo9I | GATC | 8 cut(s) | 18, 868, 1237, 1444, 1533, 1559, 1962, 1972 |
| LguI | GCTCTTC | 2 cut(s) | 807, 1607 |
| LmnI | GCTCC | 6 cut(s) | 432, 728, 1045, 1567, 1810, 2047 |
| Lsp1109I | GCAGC | 7 cut(s) | 358, 1115, 1175, 1552, 1557, 1604, 1690 |
| LweI | GCATC | 3 cut(s) | 804, 1390, 1399 |
| MaeII | ACGT | 2 cut(s) | 48, 1143 |
| MaeIII | GTNAC | 3 cut(s) | 857, 1954, 2035 |
| MalI | GATC | 8 cut(s) | 20, 870, 1239, 1446, 1535, 1561, 1964, 1974 |
| MbiI | CCGCTC | 6 cut(s) | 785, 1246, 1273, 1441, 1462, 1830 |
| MboI | GATC | 8 cut(s) | 18, 868, 1237, 1444, 1533, 1559, 1962, 1972 |
| MfeI | CAATTG | 1 cut(s) | 342 |
| MflI | RGATCY | 4 cut(s) | 18, 1444, 1533, 1559 |
| MhlI | GDGCHC | 3 cut(s) | 745, 1799, 1828 |
| MluCI | AATT | 5 cut(s) | 342, 799, 1547, 1577, 1902 |
| Mly113I | GGCGCC | 2 cut(s) | 638, 1734 |
| MlyI | GAGTC | 7 cut(s) | 77, 320, 532, 1199, 1333, 1862, 1873 |
| MmeI | TCCRAC | 1 cut(s) | 2001 |
| MseI | TTAA | 4 cut(s) | 759, 1424, 1449, 1530 |
| MslI | CAYNNNNRTG | 1 cut(s) | 570 |
| MspCI | CTTAAG | 1 cut(s) | 1448 |
| MspI | CCGG | 3 cut(s) | 885, 1859, 2004 |
| MspR9I | CCNGG | 6 cut(s) | 319, 503, 679, 886, 1048, 2005 |
| MunI | CAATTG | 1 cut(s) | 342 |
| MvaI | CCWGG | 4 cut(s) | 319, 503, 679, 1048 |
| MvnI | CGCG | 6 cut(s) | 921, 937, 1084, 1223, 1565, 1766 |
| NarI | GGCGCC | 2 cut(s) | 638, 1734 |
| NciI | CCSGG | 2 cut(s) | 886, 2005 |
| NcoI | CCATGG | 1 cut(s) | 1950 |
| NdeII | GATC | 8 cut(s) | 18, 868, 1237, 1444, 1533, 1559, 1962, 1972 |
| NheI | GCTAGC | 1 cut(s) | 247 |
| NlaIII | CATG | 8 cut(s) | 64, 614, 829, 1720, 1913, 1924, 1954, 2058 |
| NmuCI | GTSAC | 2 cut(s) | 1954, 2035 |
| NsbI | TGCGCA | 1 cut(s) | 1621 |
| NspI | RCATGY | 2 cut(s) | 614, 1720 |
| NspV | TTCGAA | 1 cut(s) | 123 |
| PaeR7I | CTCGAG | 1 cut(s) | 22 |
| PaqCI | CACCTGC | 1 cut(s) | 1039 |
| PciI | ACATGT | 1 cut(s) | 610 |
| PciSI | GCTCTTC | 2 cut(s) | 807, 1607 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 45 |
| PfeI | GAWTC | 3 cut(s) | 665, 929, 1640 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 159, 1510, 1743 |
| PfoI | TCCNGGA | 1 cut(s) | 1046 |
| Ple19I | CGATCG | 1 cut(s) | 1975 |
| PleI | GAGTC | 7 cut(s) | 77, 319, 531, 1199, 1332, 1862, 1873 |
| PluTI | GGCGCC | 2 cut(s) | 641, 1737 |
| PpsI | GAGTC | 7 cut(s) | 77, 319, 531, 1199, 1332, 1862, 1873 |
| PpuMI | RGGWCCY | 2 cut(s) | 1299, 1770 |
| PscI | ACATGT | 1 cut(s) | 610 |
| Psp5II | RGGWCCY | 2 cut(s) | 1299, 1770 |
| Psp6I | CCWGG | 4 cut(s) | 317, 501, 677, 1046 |
| PspGI | CCWGG | 4 cut(s) | 317, 501, 677, 1046 |
| PspPI | GGNCC | 8 cut(s) | 150, 359, 542, 1050, 1187, 1299, 1501, 1770 |
| PspPPI | RGGWCCY | 2 cut(s) | 1299, 1770 |
| PstI | CTGCAG | 3 cut(s) | 109, 1036, 1542 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1031 |
| PsuI | RGATCY | 4 cut(s) | 18, 1444, 1533, 1559 |
| PvuI | CGATCG | 1 cut(s) | 1975 |
| PvuII | CAGCTG | 2 cut(s) | 371, 1474 |
| RsaI | GTAC | 5 cut(s) | 94, 561, 985, 1664, 1948 |
| RsaNI | GTAC | 5 cut(s) | 93, 560, 984, 1663, 1947 |
| RseI | CAYNNNNRTG | 1 cut(s) | 570 |
| SacII | CCGCGG | 3 cut(s) | 1085, 1566, 1767 |
| SapI | GCTCTTC | 2 cut(s) | 807, 1607 |
| SaqAI | TTAA | 4 cut(s) | 759, 1424, 1449, 1530 |
| Sau3AI | GATC | 8 cut(s) | 18, 868, 1237, 1444, 1533, 1559, 1962, 1972 |
| Sau96I | GGNCC | 8 cut(s) | 150, 359, 542, 1050, 1187, 1299, 1501, 1770 |
| SbfI | CCTGCAGG | 1 cut(s) | 109 |
| SchI | GAGTC | 7 cut(s) | 77, 320, 532, 1199, 1333, 1862, 1873 |
| ScrFI | CCNGG | 6 cut(s) | 319, 503, 679, 886, 1048, 2005 |
| SdaI | CCTGCAGG | 1 cut(s) | 109 |
| SduI | GDGCHC | 3 cut(s) | 745, 1799, 1828 |
| SfaNI | GCATC | 3 cut(s) | 804, 1390, 1399 |
| SfcI | CTRYAG | 3 cut(s) | 105, 1032, 1538 |
| SfoI | GGCGCC | 2 cut(s) | 639, 1735 |
| Sfr274I | CTCGAG | 1 cut(s) | 22 |
| Sfr303I | CCGCGG | 3 cut(s) | 1085, 1566, 1767 |
| SfuI | TTCGAA | 1 cut(s) | 123 |
| SgrBI | CCGCGG | 3 cut(s) | 1085, 1566, 1767 |
| SinI | GGWCC | 6 cut(s) | 150, 359, 1050, 1299, 1501, 1770 |
| SlaI | CTCGAG | 1 cut(s) | 22 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 570 |
| SmlI | CTYRAG | 4 cut(s) | 22, 1071, 1328, 1448 |
| SmoI | CTYRAG | 4 cut(s) | 22, 1071, 1328, 1448 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 109 |
| Sse9I | AATT | 5 cut(s) | 342, 799, 1547, 1577, 1902 |
| SspDI | GGCGCC | 2 cut(s) | 637, 1733 |
| StyD4I | CCNGG | 6 cut(s) | 317, 501, 677, 884, 1046, 2003 |
| StyI | CCWWGG | 3 cut(s) | 158, 1773, 1950 |
| TaaI | ACNGT | 7 cut(s) | 120, 379, 386, 481, 857, 983, 1801 |
| TaiI | ACGT | 2 cut(s) | 51, 1146 |
| TaqI | TCGA | 6 cut(s) | 23, 123, 138, 810, 966, 1437 |
| TaqII | GACCGA | 3 cut(s) | 376, 893, 1385 |
| TasI | AATT | 5 cut(s) | 342, 799, 1547, 1577, 1902 |
| TfiI | GAWTC | 3 cut(s) | 665, 929, 1640 |
| Tru1I | TTAA | 4 cut(s) | 759, 1424, 1449, 1530 |
| Tru9I | TTAA | 4 cut(s) | 759, 1424, 1449, 1530 |
| TscAI | CASTG | 7 cut(s) | 34, 123, 343, 445, 824, 1804, 2044 |
| TseFI | GTSAC | 2 cut(s) | 1954, 2035 |
| TseI | GCWGC | 7 cut(s) | 371, 1103, 1163, 1540, 1570, 1617, 1703 |
| Tsp45I | GTSAC | 2 cut(s) | 1954, 2035 |
| TspDTI | ATGAA | 4 cut(s) | 588, 674, 1763, 1909 |
| TspGWI | ACGGA | 1 cut(s) | 163 |
| TspRI | CASTG | 7 cut(s) | 34, 123, 343, 445, 824, 1804, 2044 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 159, 1510, 1743 |
| Vha464I | CTTAAG | 1 cut(s) | 1448 |
| VpaK11BI | GGWCC | 6 cut(s) | 150, 359, 1050, 1299, 1501, 1770 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1541 |
| XapI | RAATTY | 3 cut(s) | 1547, 1577, 1902 |
| XceI | RCATGY | 2 cut(s) | 614, 1720 |
| XhoI | CTCGAG | 1 cut(s) | 22 |