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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 321 |
| AccBSI | CCGCTC | 2 cut(s) | 37, 49 |
| AclWI | GGATC | 1 cut(s) | 105 |
| AcoI | YGGCCR | 1 cut(s) | 522 |
| AcsI | RAATTY | 1 cut(s) | 304 |
| AcuI | CTGAAG | 3 cut(s) | 113, 119, 188 |
| AfaI | GTAC | 1 cut(s) | 367 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 76, 139, 220, 277 |
| AgsI | TTSAA | 2 cut(s) | 128, 244 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 561 |
| AjnI | CCWGG | 2 cut(s) | 69, 597 |
| AluBI | AGCT | 4 cut(s) | 86, 103, 166, 175 |
| AluI | AGCT | 4 cut(s) | 86, 103, 166, 175 |
| Alw26I | GTCTC | 1 cut(s) | 435 |
| AlwI | GGATC | 1 cut(s) | 105 |
| AoxI | GGCC | 3 cut(s) | 222, 398, 522 |
| ApeKI | GCWGC | 8 cut(s) | 149, 196, 254, 281, 355, 376, 404, 641 |
| ApoI | RAATTY | 1 cut(s) | 304 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 132 |
| AspS9I | GGNCC | 2 cut(s) | 310, 455 |
| AsuHPI | GGTGA | 1 cut(s) | 37 |
| AvaII | GGWCC | 2 cut(s) | 310, 455 |
| BanII | GRGCYC | 2 cut(s) | 161, 427 |
| BauI | CACGAG | 1 cut(s) | 573 |
| BbvI | GCAGC | 8 cut(s) | 161, 183, 266, 293, 367, 388, 391, 628 |
| BceAI | ACGGC | 1 cut(s) | 28 |
| BciT130I | CCWGG | 2 cut(s) | 71, 599 |
| BclI | TGATCA | 2 cut(s) | 409, 448 |
| BcoDI | GTCTC | 1 cut(s) | 435 |
| BfaI | CTAG | 1 cut(s) | 383 |
| BfmI | CTRYAG | 2 cut(s) | 147, 252 |
| BfuAI | ACCTGC | 1 cut(s) | 321 |
| Bme1390I | CCNGG | 2 cut(s) | 71, 599 |
| Bme18I | GGWCC | 2 cut(s) | 310, 455 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 561 |
| BmgT120I | GGNCC | 2 cut(s) | 310, 455 |
| BmiI | GGNNCC | 1 cut(s) | 160 |
| BmrFI | CCNGG | 2 cut(s) | 71, 599 |
| BmrI | ACTGGG | 1 cut(s) | 349 |
| BmsI | GCATC | 2 cut(s) | 225, 339 |
| BmuI | ACTGGG | 1 cut(s) | 349 |
| BpmI | CTGGAG | 2 cut(s) | 92, 197 |
| BsaJI | CCNNGG | 3 cut(s) | 10, 153, 276 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 76, 139, 220, 277 |
| Bse118I | RCCGGY | 1 cut(s) | 388 |
| Bse1I | ACTGG | 1 cut(s) | 344 |
| BseBI | CCWGG | 2 cut(s) | 71, 599 |
| BseDI | CCNNGG | 3 cut(s) | 10, 153, 276 |
| BseGI | GGATG | 1 cut(s) | 10 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 76, 139, 220, 277 |
| BseMII | CTCAG | 3 cut(s) | 200, 485, 506 |
| BseNI | ACTGG | 1 cut(s) | 344 |
| BseXI | GCAGC | 8 cut(s) | 161, 183, 266, 293, 367, 388, 391, 628 |
| BshFI | GGCC | 3 cut(s) | 224, 400, 524 |
| BsiSI | CCGG | 3 cut(s) | 389, 458, 620 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 76, 139, 220, 277 |
| BsmAI | GTCTC | 1 cut(s) | 435 |
| BsnI | GGCC | 3 cut(s) | 224, 400, 524 |
| Bsp1286I | GDGCHC | 2 cut(s) | 161, 427 |
| Bsp143I | GATC | 4 cut(s) | 27, 97, 409, 448 |
| BspANI | GGCC | 3 cut(s) | 224, 400, 524 |
| BspCNI | CTCAG | 3 cut(s) | 201, 484, 505 |
| BspLI | GGNNCC | 1 cut(s) | 160 |
| BspMAI | CTGCAG | 2 cut(s) | 151, 256 |
| BspMI | ACCTGC | 1 cut(s) | 321 |
| BspPI | GGATC | 1 cut(s) | 105 |
| BsrBI | CCGCTC | 2 cut(s) | 37, 49 |
| BsrFI | RCCGGY | 1 cut(s) | 388 |
| BsrI | ACTGG | 1 cut(s) | 344 |
| BssAI | RCCGGY | 1 cut(s) | 388 |
| BssECI | CCNNGG | 3 cut(s) | 10, 153, 276 |
| BssMI | GATC | 4 cut(s) | 27, 97, 409, 448 |
| BssSI | CACGAG | 1 cut(s) | 573 |
| BssT1I | CCWWGG | 1 cut(s) | 153 |
| Bst2BI | CACGAG | 1 cut(s) | 573 |
| Bst2UI | CCWGG | 2 cut(s) | 71, 599 |
| Bst4CI | ACNGT | 1 cut(s) | 229 |
| BstC8I | GCNNGC | 6 cut(s) | 105, 267, 360, 390, 402, 427 |
| BstDEI | CTNAG | 4 cut(s) | 209, 471, 492, 648 |
| BstDSI | CCRYGG | 1 cut(s) | 10 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 74, 275 |
| BstF5I | GGATG | 1 cut(s) | 10 |
| BstKTI | GATC | 4 cut(s) | 30, 100, 412, 451 |
| BstMAI | GTCTC | 1 cut(s) | 435 |
| BstMBI | GATC | 4 cut(s) | 27, 97, 409, 448 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 46, 172, 287, 385, 613 |
| BstNI | CCWGG | 2 cut(s) | 71, 599 |
| BstSCI | CCNGG | 2 cut(s) | 69, 597 |
| BstSFI | CTRYAG | 2 cut(s) | 147, 252 |
| BstV1I | GCAGC | 8 cut(s) | 161, 183, 266, 293, 367, 388, 391, 628 |
| BsuRI | GGCC | 3 cut(s) | 224, 400, 524 |
| BtgI | CCRYGG | 1 cut(s) | 10 |
| BtsCI | GGATG | 1 cut(s) | 10 |
| BveI | ACCTGC | 1 cut(s) | 321 |
| Cac8I | GCNNGC | 6 cut(s) | 105, 267, 360, 390, 402, 427 |
| Cfr10I | RCCGGY | 1 cut(s) | 388 |
| Cfr13I | GGNCC | 2 cut(s) | 310, 455 |
| Csp6I | GTAC | 1 cut(s) | 366 |
| CviAII | CATG | 2 cut(s) | 452, 520 |
| CviQI | GTAC | 1 cut(s) | 366 |
| DdeI | CTNAG | 4 cut(s) | 209, 471, 492, 648 |
| DpnI | GATC | 4 cut(s) | 29, 99, 411, 450 |
| DpnII | GATC | 4 cut(s) | 27, 97, 409, 448 |
| DriI | GACNNNNNGTC | 1 cut(s) | 561 |
| EaeI | YGGCCR | 1 cut(s) | 522 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 561 |
| Eco130I | CCWWGG | 1 cut(s) | 153 |
| Eco147I | AGGCCT | 1 cut(s) | 400 |
| Eco24I | GRGCYC | 2 cut(s) | 161, 427 |
| Eco47I | GGWCC | 2 cut(s) | 310, 455 |
| Eco57I | CTGAAG | 3 cut(s) | 113, 119, 188 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 74, 275 |
| EcoRII | CCWGG | 2 cut(s) | 69, 597 |
| EcoT14I | CCWWGG | 1 cut(s) | 153 |
| EcoT38I | GRGCYC | 2 cut(s) | 161, 427 |
| ErhI | CCWWGG | 1 cut(s) | 153 |
| FaeI | CATG | 2 cut(s) | 455, 523 |
| FaiI | YATR | 4 cut(s) | 83, 453, 521, 548 |
| FatI | CATG | 2 cut(s) | 451, 519 |
| FauI | CCCGC | 1 cut(s) | 132 |
| FbaI | TGATCA | 2 cut(s) | 409, 448 |
| FokI | GGATG | 1 cut(s) | 17 |
| FriOI | GRGCYC | 2 cut(s) | 161, 427 |
| FspBI | CTAG | 1 cut(s) | 383 |
| GsuI | CTGGAG | 2 cut(s) | 92, 197 |
| HaeIII | GGCC | 3 cut(s) | 224, 400, 524 |
| HapII | CCGG | 3 cut(s) | 389, 458, 620 |
| Hin1II | CATG | 2 cut(s) | 455, 523 |
| HinfI | GANTC | 5 cut(s) | 143, 467, 478, 562, 652 |
| HpaII | CCGG | 3 cut(s) | 389, 458, 620 |
| HphI | GGTGA | 1 cut(s) | 37 |
| Hpy188I | TCNGA | 3 cut(s) | 163, 499, 583 |
| Hpy99I | CGWCG | 2 cut(s) | 35, 233 |
| HpyAV | CCTTC | 8 cut(s) | 88, 106, 115, 143, 280, 319, 390, 536 |
| HpyCH4III | ACNGT | 1 cut(s) | 229 |
| HpyCH4IV | ACGT | 1 cut(s) | 42 |
| HpyCH4V | TGCA | 5 cut(s) | 149, 199, 254, 355, 607 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 46, 172, 287, 385, 613 |
| HpyF3I | CTNAG | 4 cut(s) | 209, 471, 492, 648 |
| HpySE526I | ACGT | 1 cut(s) | 42 |
| Hsp92II | CATG | 2 cut(s) | 455, 523 |
| KroI | GCCGGC | 1 cut(s) | 388 |
| KroNI | GCCGGC | 1 cut(s) | 390 |
| Ksp22I | TGATCA | 2 cut(s) | 409, 448 |
| Kzo9I | GATC | 4 cut(s) | 27, 97, 409, 448 |
| LmnI | GCTCC | 3 cut(s) | 73, 164, 649 |
| Lsp1109I | GCAGC | 8 cut(s) | 161, 183, 266, 293, 367, 388, 391, 628 |
| LweI | GCATC | 2 cut(s) | 225, 339 |
| MaeI | CTAG | 1 cut(s) | 383 |
| MaeII | ACGT | 1 cut(s) | 42 |
| MalI | GATC | 4 cut(s) | 29, 99, 411, 450 |
| MbiI | CCGCTC | 2 cut(s) | 37, 49 |
| MboI | GATC | 4 cut(s) | 27, 97, 409, 448 |
| MboII | GAAGA | 2 cut(s) | 130, 181 |
| MhlI | GDGCHC | 2 cut(s) | 161, 427 |
| MluCI | AATT | 1 cut(s) | 304 |
| MlyI | GAGTC | 3 cut(s) | 152, 472, 571 |
| MnlI | CCTC | 7 cut(s) | 172, 214, 229, 271, 366, 495, 605 |
| MroNI | GCCGGC | 1 cut(s) | 388 |
| MroXI | GAANNNNTTC | 1 cut(s) | 132 |
| MspA1I | CMGCKG | 4 cut(s) | 103, 139, 379, 475 |
| MspI | CCGG | 3 cut(s) | 389, 458, 620 |
| MspR9I | CCNGG | 2 cut(s) | 71, 599 |
| MvaI | CCWGG | 2 cut(s) | 71, 599 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 46, 172, 287, 385, 613 |
| NaeI | GCCGGC | 1 cut(s) | 390 |
| NdeII | GATC | 4 cut(s) | 27, 97, 409, 448 |
| NgoMIV | GCCGGC | 1 cut(s) | 388 |
| NlaIII | CATG | 2 cut(s) | 455, 523 |
| NlaIV | GGNNCC | 1 cut(s) | 160 |
| NmeAIII | GCCGAG | 1 cut(s) | 172 |
| PceI | AGGCCT | 1 cut(s) | 400 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 39, 225 |
| PdiI | GCCGGC | 1 cut(s) | 390 |
| PdmI | GAANNNNTTC | 1 cut(s) | 132 |
| PfeI | GAWTC | 2 cut(s) | 467, 652 |
| PflFI | GACNNNGTC | 1 cut(s) | 341 |
| PleI | GAGTC | 3 cut(s) | 151, 472, 570 |
| PpsI | GAGTC | 3 cut(s) | 151, 472, 570 |
| Psp6I | CCWGG | 2 cut(s) | 69, 597 |
| PspGI | CCWGG | 2 cut(s) | 69, 597 |
| PspN4I | GGNNCC | 1 cut(s) | 160 |
| PspPI | GGNCC | 2 cut(s) | 310, 455 |
| PstI | CTGCAG | 2 cut(s) | 151, 256 |
| PsyI | GACNNNGTC | 1 cut(s) | 341 |
| PvuII | CAGCTG | 1 cut(s) | 103 |
| RsaI | GTAC | 1 cut(s) | 367 |
| RsaNI | GTAC | 1 cut(s) | 366 |
| Sau3AI | GATC | 4 cut(s) | 27, 97, 409, 448 |
| Sau96I | GGNCC | 2 cut(s) | 310, 455 |
| SchI | GAGTC | 3 cut(s) | 152, 472, 571 |
| ScrFI | CCNGG | 2 cut(s) | 71, 599 |
| SduI | GDGCHC | 2 cut(s) | 161, 427 |
| SfaNI | GCATC | 2 cut(s) | 225, 339 |
| SfcI | CTRYAG | 2 cut(s) | 147, 252 |
| SinI | GGWCC | 2 cut(s) | 310, 455 |
| Sse9I | AATT | 1 cut(s) | 304 |
| SseBI | AGGCCT | 1 cut(s) | 400 |
| SspMI | CTAG | 1 cut(s) | 383 |
| StuI | AGGCCT | 1 cut(s) | 400 |
| StyD4I | CCNGG | 2 cut(s) | 69, 597 |
| StyI | CCWWGG | 1 cut(s) | 153 |
| TaaI | ACNGT | 1 cut(s) | 229 |
| TaiI | ACGT | 1 cut(s) | 45 |
| TaqI | TCGA | 4 cut(s) | 33, 219, 371, 560 |
| TaqII | GACCGA | 1 cut(s) | 290 |
| TasI | AATT | 1 cut(s) | 304 |
| TatI | WGTACW | 1 cut(s) | 365 |
| TauI | GCSGC | 6 cut(s) | 40, 110, 216, 382, 527, 619 |
| TfiI | GAWTC | 2 cut(s) | 467, 652 |
| TseI | GCWGC | 8 cut(s) | 149, 196, 254, 281, 355, 376, 404, 641 |
| TspDTI | ATGAA | 2 cut(s) | 219, 508 |
| TspGWI | ACGGA | 1 cut(s) | 645 |
| Tth111I | GACNNNGTC | 1 cut(s) | 341 |
| VpaK11BI | GGWCC | 2 cut(s) | 310, 455 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 74, 275 |
| XapI | RAATTY | 1 cut(s) | 304 |
| XmnI | GAANNNNTTC | 1 cut(s) | 132 |
| XspI | CTAG | 1 cut(s) | 383 |