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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1165 |
| AccB1I | GGYRCC | 6 cut(s) | 301, 858, 1178, 1214, 1249, 1307 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1224 |
| AccBSI | CCGCTC | 4 cut(s) | 616, 781, 856, 922 |
| AccII | CGCG | 3 cut(s) | 563, 587, 1458 |
| AclWI | GGATC | 1 cut(s) | 400 |
| AcoI | YGGCCR | 3 cut(s) | 344, 1044, 1453 |
| AcuI | CTGAAG | 5 cut(s) | 413, 688, 794, 1004, 1223 |
| AcyI | GRCGYC | 5 cut(s) | 302, 557, 1166, 1215, 1250 |
| AdeI | CACNNNGTG | 1 cut(s) | 315 |
| AfaI | GTAC | 6 cut(s) | 125, 324, 590, 675, 1285, 1429 |
| AflII | CTTAAG | 1 cut(s) | 20 |
| AgsI | TTSAA | 4 cut(s) | 57, 376, 1129, 1559 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1443 |
| AjiI | CACGTC | 2 cut(s) | 478, 544 |
| AjnI | CCWGG | 5 cut(s) | 660, 831, 927, 1037, 1080 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1382, 1414 |
| AleI | CACNNNNGTG | 1 cut(s) | 422 |
| AluBI | AGCT | 8 cut(s) | 178, 643, 955, 1098, 1259, 1268, 1563, 1570 |
| AluI | AGCT | 8 cut(s) | 178, 643, 955, 1098, 1259, 1268, 1563, 1570 |
| Alw26I | GTCTC | 3 cut(s) | 110, 548, 1430 |
| AlwI | GGATC | 1 cut(s) | 400 |
| Ama87I | CYCGRG | 3 cut(s) | 771, 1315, 1416 |
| AoxI | GGCC | 7 cut(s) | 344, 354, 398, 492, 658, 1044, 1453 |
| ApaI | GGGCCC | 1 cut(s) | 496 |
| ApeKI | GCWGC | 5 cut(s) | 286, 643, 976, 1492, 1532 |
| AspLEI | GCGC | 4 cut(s) | 304, 1156, 1217, 1252 |
| AspS9I | GGNCC | 5 cut(s) | 79, 492, 493, 925, 1015 |
| AsuC2I | CCSGG | 5 cut(s) | 133, 313, 1343, 1417, 1418 |
| AsuHPI | GGTGA | 5 cut(s) | 245, 352, 623, 811, 1079 |
| AvaI | CYCGRG | 3 cut(s) | 771, 1315, 1416 |
| AvaII | GGWCC | 3 cut(s) | 79, 925, 1015 |
| BaeGI | GKGCMC | 4 cut(s) | 50, 496, 723, 1183 |
| BalI | TGGCCA | 2 cut(s) | 346, 1046 |
| BanI | GGYRCC | 6 cut(s) | 301, 858, 1178, 1214, 1249, 1307 |
| BanII | GRGCYC | 1 cut(s) | 496 |
| BauI | CACGAG | 1 cut(s) | 740 |
| BbsI | GAAGAC | 1 cut(s) | 800 |
| BbvCI | CCTCAGC | 1 cut(s) | 1089 |
| BbvI | GCAGC | 5 cut(s) | 273, 630, 963, 1504, 1544 |
| BccI | CCATC | 3 cut(s) | 507, 1298, 1418 |
| BceAI | ACGGC | 4 cut(s) | 233, 253, 341, 726 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 697, 731 |
| BciT130I | CCWGG | 5 cut(s) | 662, 833, 929, 1039, 1082 |
| BclI | TGATCA | 1 cut(s) | 691 |
| BcnI | CCSGG | 5 cut(s) | 133, 313, 1343, 1417, 1418 |
| BcoDI | GTCTC | 3 cut(s) | 110, 548, 1430 |
| BfaI | CTAG | 3 cut(s) | 173, 273, 549 |
| BfmI | CTRYAG | 1 cut(s) | 287 |
| BfoI | RGCGCY | 4 cut(s) | 305, 1157, 1218, 1253 |
| BfrI | CTTAAG | 1 cut(s) | 20 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 254, 1043 |
| BlpI | GCTNAGC | 2 cut(s) | 144, 179 |
| Bme18I | GGWCC | 3 cut(s) | 79, 925, 1015 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1443 |
| BmeT110I | CYCGRG | 3 cut(s) | 771, 1315, 1416 |
| BmgBI | CACGTC | 2 cut(s) | 478, 544 |
| BmgT120I | GGNCC | 5 cut(s) | 79, 492, 493, 925, 1015 |
| BmrI | ACTGGG | 3 cut(s) | 498, 1234, 1369 |
| BmsI | GCATC | 5 cut(s) | 767, 880, 1188, 1244, 1512 |
| BmuI | ACTGGG | 3 cut(s) | 498, 1234, 1369 |
| BpiI | GAAGAC | 1 cut(s) | 800 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 388, 420 |
| BpmI | CTGGAG | 3 cut(s) | 683, 950, 977 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1089, 1260 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 144, 179 |
| BpuEI | CTTGAG | 2 cut(s) | 773, 1281 |
| BpuMI | CCSGG | 5 cut(s) | 133, 313, 1343, 1417, 1418 |
| BsaHI | GRCGYC | 5 cut(s) | 302, 557, 1166, 1215, 1250 |
| BsaI | GGTCTC | 1 cut(s) | 110 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 107, 137, 1500, 1530 |
| Bse118I | RCCGGY | 2 cut(s) | 1243, 1273 |
| Bse1I | ACTGG | 6 cut(s) | 184, 268, 493, 1229, 1375, 1456 |
| Bse3DI | GCAATG | 1 cut(s) | 363 |
| BseBI | CCWGG | 5 cut(s) | 662, 833, 929, 1039, 1082 |
| BseGI | GGATG | 7 cut(s) | 478, 853, 895, 1235, 1354, 1429, 1483 |
| BseMI | GCAATG | 1 cut(s) | 363 |
| BseMII | CTCAG | 4 cut(s) | 87, 158, 1080, 1152 |
| BseNI | ACTGG | 6 cut(s) | 184, 268, 493, 1229, 1375, 1456 |
| BseRI | GAGGAG | 2 cut(s) | 809, 1356 |
| BseSI | GKGCMC | 4 cut(s) | 50, 496, 723, 1183 |
| BseXI | GCAGC | 5 cut(s) | 273, 630, 963, 1504, 1544 |
| BseYI | CCCAGC | 3 cut(s) | 1356, 1394, 1545 |
| BsgI | GTGCAG | 1 cut(s) | 337 |
| Bsh1236I | CGCG | 3 cut(s) | 563, 587, 1458 |
| BshFI | GGCC | 7 cut(s) | 346, 356, 400, 494, 660, 1046, 1455 |
| BshNI | GGYRCC | 6 cut(s) | 301, 858, 1178, 1214, 1249, 1307 |
| BsiHKCI | CYCGRG | 3 cut(s) | 771, 1315, 1416 |
| BsiSI | CCGG | 6 cut(s) | 132, 313, 1244, 1274, 1343, 1417 |
| BsiWI | CGTACG | 1 cut(s) | 588 |
| BslFI | GGGAC | 4 cut(s) | 274, 938, 955, 1431 |
| BsmAI | GTCTC | 3 cut(s) | 110, 548, 1430 |
| BsmBI | CGTCTC | 1 cut(s) | 548 |
| BsmFI | GGGAC | 4 cut(s) | 274, 938, 955, 1431 |
| BsmI | GAATGC | 1 cut(s) | 741 |
| BsnI | GGCC | 7 cut(s) | 346, 356, 400, 494, 660, 1046, 1455 |
| Bso31I | GGTCTC | 1 cut(s) | 110 |
| BsoBI | CYCGRG | 3 cut(s) | 771, 1315, 1416 |
| Bsp120I | GGGCCC | 1 cut(s) | 492 |
| Bsp1286I | GDGCHC | 4 cut(s) | 50, 496, 723, 1183 |
| Bsp143I | GATC | 4 cut(s) | 99, 392, 691, 982 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 144, 179 |
| Bsp19I | CCATGG | 1 cut(s) | 1218 |
| BspANI | GGCC | 7 cut(s) | 346, 356, 400, 494, 660, 1046, 1455 |
| BspCNI | CTCAG | 4 cut(s) | 88, 157, 1081, 1153 |
| BspFNI | CGCG | 3 cut(s) | 563, 587, 1458 |
| BspMAI | CTGCAG | 1 cut(s) | 291 |
| BspPI | GGATC | 1 cut(s) | 400 |
| BspT107I | GGYRCC | 6 cut(s) | 301, 858, 1178, 1214, 1249, 1307 |
| BspTI | CTTAAG | 1 cut(s) | 20 |
| BspTNI | GGTCTC | 1 cut(s) | 110 |
| BsrBI | CCGCTC | 4 cut(s) | 616, 781, 856, 922 |
| BsrDI | GCAATG | 1 cut(s) | 363 |
| BsrFI | RCCGGY | 2 cut(s) | 1243, 1273 |
| BsrI | ACTGG | 6 cut(s) | 184, 268, 493, 1229, 1375, 1456 |
| BssAI | RCCGGY | 2 cut(s) | 1243, 1273 |
| BssMI | GATC | 4 cut(s) | 99, 392, 691, 982 |
| BssNI | GRCGYC | 5 cut(s) | 302, 557, 1166, 1215, 1250 |
| BssSI | CACGAG | 1 cut(s) | 740 |
| BssT1I | CCWWGG | 4 cut(s) | 528, 996, 1047, 1218 |
| Bst2BI | CACGAG | 1 cut(s) | 740 |
| Bst2UI | CCWGG | 5 cut(s) | 662, 833, 929, 1039, 1082 |
| Bst4CI | ACNGT | 6 cut(s) | 92, 154, 340, 688, 878, 1059 |
| Bst6I | CTCTTC | 1 cut(s) | 462 |
| BstACI | GRCGYC | 5 cut(s) | 302, 557, 1166, 1215, 1250 |
| BstAFI | CTTAAG | 1 cut(s) | 20 |
| BstDEI | CTNAG | 6 cut(s) | 96, 144, 179, 1089, 1161, 1260 |
| BstDSI | CCRYGG | 3 cut(s) | 198, 1218, 1456 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 866 |
| BstF5I | GGATG | 7 cut(s) | 478, 853, 895, 1235, 1354, 1429, 1483 |
| BstFNI | CGCG | 3 cut(s) | 563, 587, 1458 |
| BstH2I | RGCGCY | 4 cut(s) | 305, 1157, 1218, 1253 |
| BstHHI | GCGC | 4 cut(s) | 304, 1156, 1217, 1252 |
| BstKTI | GATC | 4 cut(s) | 102, 395, 694, 985 |
| BstMAI | GTCTC | 3 cut(s) | 110, 548, 1430 |
| BstMBI | GATC | 4 cut(s) | 99, 392, 691, 982 |
| BstNI | CCWGG | 5 cut(s) | 662, 833, 929, 1039, 1082 |
| BstSFI | CTRYAG | 1 cut(s) | 287 |
| BstSLI | GKGCMC | 4 cut(s) | 50, 496, 723, 1183 |
| BstUI | CGCG | 3 cut(s) | 563, 587, 1458 |
| BstV1I | GCAGC | 5 cut(s) | 273, 630, 963, 1504, 1544 |
| BstV2I | GAAGAC | 1 cut(s) | 800 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1246 |
| BsuRI | GGCC | 7 cut(s) | 346, 356, 400, 494, 660, 1046, 1455 |
| BtgI | CCRYGG | 3 cut(s) | 198, 1218, 1456 |
| BtrI | CACGTC | 2 cut(s) | 478, 544 |
| BtsCI | GGATG | 7 cut(s) | 478, 853, 895, 1235, 1354, 1429, 1483 |
| BtsIMutI | CAGTG | 2 cut(s) | 345, 1449 |
| CfoI | GCGC | 4 cut(s) | 304, 1156, 1217, 1252 |
| Cfr10I | RCCGGY | 2 cut(s) | 1243, 1273 |
| Cfr13I | GGNCC | 5 cut(s) | 79, 492, 493, 925, 1015 |
| Cfr42I | CCGCGG | 1 cut(s) | 1459 |
| Cfr9I | CCCGGG | 1 cut(s) | 1416 |
| CseI | GACGC | 2 cut(s) | 565, 1155 |
| Csp6I | GTAC | 6 cut(s) | 124, 323, 589, 674, 1284, 1428 |
| CviAII | CATG | 4 cut(s) | 121, 211, 1219, 1240 |
| CviQI | GTAC | 6 cut(s) | 124, 323, 589, 674, 1284, 1428 |
| DdeI | CTNAG | 6 cut(s) | 96, 144, 179, 1089, 1161, 1260 |
| DinI | GGCGCC | 3 cut(s) | 303, 1216, 1251 |
| DpnI | GATC | 4 cut(s) | 101, 394, 693, 984 |
| DpnII | GATC | 4 cut(s) | 99, 392, 691, 982 |
| DraIII | CACNNNGTG | 1 cut(s) | 315 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1165 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1443 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1165 |
| EaeI | YGGCCR | 3 cut(s) | 344, 1044, 1453 |
| Eam1104I | CTCTTC | 1 cut(s) | 462 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1443 |
| EarI | CTCTTC | 1 cut(s) | 462 |
| EciI | GGCGGA | 7 cut(s) | 513, 860, 1154, 1260, 1361, 1436, 1476 |
| Eco130I | CCWWGG | 4 cut(s) | 528, 996, 1047, 1218 |
| Eco147I | AGGCCT | 1 cut(s) | 400 |
| Eco24I | GRGCYC | 1 cut(s) | 496 |
| Eco31I | GGTCTC | 1 cut(s) | 110 |
| Eco47I | GGWCC | 3 cut(s) | 79, 925, 1015 |
| Eco57I | CTGAAG | 5 cut(s) | 413, 688, 794, 1004, 1223 |
| Eco88I | CYCGRG | 3 cut(s) | 771, 1315, 1416 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 866 |
| EcoO109I | RGGNCCY | 4 cut(s) | 492, 493, 925, 1015 |
| EcoRII | CCWGG | 5 cut(s) | 660, 831, 927, 1037, 1080 |
| EcoT14I | CCWWGG | 4 cut(s) | 528, 996, 1047, 1218 |
| EcoT38I | GRGCYC | 1 cut(s) | 496 |
| EgeI | GGCGCC | 3 cut(s) | 303, 1216, 1251 |
| EheI | GGCGCC | 3 cut(s) | 303, 1216, 1251 |
| ErhI | CCWWGG | 4 cut(s) | 528, 996, 1047, 1218 |
| Esp3I | CGTCTC | 1 cut(s) | 548 |
| FaeI | CATG | 4 cut(s) | 124, 214, 1222, 1243 |
| FaiI | YATR | 9 cut(s) | 52, 122, 212, 968, 1146, 1220, 1241, 1339, 1413 |
| FaqI | GGGAC | 4 cut(s) | 274, 938, 955, 1431 |
| FatI | CATG | 4 cut(s) | 120, 210, 1218, 1239 |
| FauI | CCCGC | 8 cut(s) | 250, 361, 568, 609, 774, 915, 1017, 1451 |
| FbaI | TGATCA | 1 cut(s) | 691 |
| FokI | GGATG | 7 cut(s) | 485, 860, 902, 1222, 1361, 1436, 1470 |
| FriOI | GRGCYC | 1 cut(s) | 496 |
| FspBI | CTAG | 3 cut(s) | 173, 273, 549 |
| GlaI | GCGC | 4 cut(s) | 303, 1155, 1216, 1251 |
| GsaI | CCCAGC | 3 cut(s) | 1360, 1398, 1549 |
| GsuI | CTGGAG | 3 cut(s) | 683, 950, 977 |
| HaeII | RGCGCY | 4 cut(s) | 305, 1157, 1218, 1253 |
| HaeIII | GGCC | 7 cut(s) | 346, 356, 400, 494, 660, 1046, 1455 |
| HapII | CCGG | 6 cut(s) | 132, 313, 1244, 1274, 1343, 1417 |
| HgaI | GACGC | 2 cut(s) | 565, 1155 |
| HhaI | GCGC | 4 cut(s) | 304, 1156, 1217, 1252 |
| Hin1I | GRCGYC | 5 cut(s) | 302, 557, 1166, 1215, 1250 |
| Hin1II | CATG | 4 cut(s) | 124, 214, 1222, 1243 |
| Hin6I | GCGC | 4 cut(s) | 302, 1154, 1215, 1250 |
| HinP1I | GCGC | 4 cut(s) | 302, 1154, 1215, 1250 |
| HinfI | GANTC | 8 cut(s) | 4, 452, 575, 1028, 1121, 1352, 1363, 1438 |
| HpaII | CCGG | 6 cut(s) | 132, 313, 1244, 1274, 1343, 1417 |
| HphI | GGTGA | 5 cut(s) | 245, 352, 623, 811, 1079 |
| Hpy166II | GTNNAC | 2 cut(s) | 160, 325 |
| Hpy188I | TCNGA | 6 cut(s) | 88, 190, 504, 813, 1381, 1465 |
| Hpy8I | GTNNAC | 2 cut(s) | 160, 325 |
| HpyAV | CCTTC | 8 cut(s) | 502, 712, 1000, 1028, 1144, 1225, 1496, 1522 |
| HpyCH4III | ACNGT | 6 cut(s) | 92, 154, 340, 688, 878, 1059 |
| HpyCH4IV | ACGT | 2 cut(s) | 477, 543 |
| HpyCH4V | TGCA | 3 cut(s) | 289, 318, 739 |
| HpyF3I | CTNAG | 6 cut(s) | 96, 144, 179, 1089, 1161, 1260 |
| HpySE526I | ACGT | 2 cut(s) | 477, 543 |
| Hsp92I | GRCGYC | 5 cut(s) | 302, 557, 1166, 1215, 1250 |
| Hsp92II | CATG | 4 cut(s) | 124, 214, 1222, 1243 |
| HspAI | GCGC | 4 cut(s) | 302, 1154, 1215, 1250 |
| KasI | GGCGCC | 3 cut(s) | 301, 1214, 1249 |
| KroI | GCCGGC | 1 cut(s) | 1273 |
| KroNI | GCCGGC | 1 cut(s) | 1275 |
| Ksp22I | TGATCA | 1 cut(s) | 691 |
| KspI | CCGCGG | 1 cut(s) | 1459 |
| Kzo9I | GATC | 4 cut(s) | 99, 392, 691, 982 |
| LmnI | GCTCC | 6 cut(s) | 526, 538, 853, 958, 1095, 1273 |
| Lsp1109I | GCAGC | 5 cut(s) | 273, 630, 963, 1504, 1544 |
| LweI | GCATC | 5 cut(s) | 767, 880, 1188, 1244, 1512 |
| MaeI | CTAG | 3 cut(s) | 173, 273, 549 |
| MaeII | ACGT | 2 cut(s) | 477, 543 |
| MaeIII | GTNAC | 5 cut(s) | 66, 233, 358, 799, 1072 |
| MalI | GATC | 4 cut(s) | 101, 394, 693, 984 |
| MbiI | CCGCTC | 4 cut(s) | 616, 781, 856, 922 |
| MboI | GATC | 4 cut(s) | 99, 392, 691, 982 |
| MboII | GAAGA | 4 cut(s) | 476, 479, 517, 800 |
| MhlI | GDGCHC | 4 cut(s) | 50, 496, 723, 1183 |
| MlsI | TGGCCA | 2 cut(s) | 346, 1046 |
| MluCI | AATT | 1 cut(s) | 944 |
| MluNI | TGGCCA | 2 cut(s) | 346, 1046 |
| Mly113I | GGCGCC | 3 cut(s) | 302, 1215, 1250 |
| MlyI | GAGTC | 6 cut(s) | 446, 1037, 1130, 1346, 1357, 1432 |
| MmeI | TCCRAC | 3 cut(s) | 712, 1041, 1359 |
| Mox20I | TGGCCA | 2 cut(s) | 346, 1046 |
| MroNI | GCCGGC | 1 cut(s) | 1273 |
| MscI | TGGCCA | 2 cut(s) | 346, 1046 |
| MseI | TTAA | 3 cut(s) | 21, 602, 1053 |
| MslI | CAYNNNNRTG | 2 cut(s) | 422, 1244 |
| Msp20I | TGGCCA | 2 cut(s) | 346, 1046 |
| MspA1I | CMGCKG | 4 cut(s) | 1024, 1115, 1360, 1458 |
| MspCI | CTTAAG | 1 cut(s) | 20 |
| MspI | CCGG | 6 cut(s) | 132, 313, 1244, 1274, 1343, 1417 |
| Mva1269I | GAATGC | 1 cut(s) | 741 |
| MvaI | CCWGG | 5 cut(s) | 662, 833, 929, 1039, 1082 |
| MvnI | CGCG | 3 cut(s) | 563, 587, 1458 |
| NaeI | GCCGGC | 1 cut(s) | 1275 |
| NarI | GGCGCC | 3 cut(s) | 302, 1215, 1250 |
| NciI | CCSGG | 5 cut(s) | 133, 313, 1343, 1417, 1418 |
| NcoI | CCATGG | 1 cut(s) | 1218 |
| NdeII | GATC | 4 cut(s) | 99, 392, 691, 982 |
| NgoMIV | GCCGGC | 1 cut(s) | 1273 |
| NlaIII | CATG | 4 cut(s) | 124, 214, 1222, 1243 |
| NmeAIII | GCCGAG | 2 cut(s) | 619, 1561 |
| NmuCI | GTSAC | 5 cut(s) | 66, 233, 358, 799, 1072 |
| OliI | CACNNNNGTG | 1 cut(s) | 422 |
| PceI | AGGCCT | 1 cut(s) | 400 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 591 |
| PctI | GAATGC | 1 cut(s) | 741 |
| PdiI | GCCGGC | 1 cut(s) | 1275 |
| PfeI | GAWTC | 1 cut(s) | 575 |
| Pfl23II | CGTACG | 1 cut(s) | 588 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1224 |
| PleI | GAGTC | 6 cut(s) | 446, 1036, 1129, 1346, 1357, 1432 |
| PluTI | GGCGCC | 3 cut(s) | 305, 1218, 1253 |
| PpsI | GAGTC | 6 cut(s) | 446, 1036, 1129, 1346, 1357, 1432 |
| PpuMI | RGGWCCY | 2 cut(s) | 925, 1015 |
| Psp5II | RGGWCCY | 2 cut(s) | 925, 1015 |
| Psp6I | CCWGG | 5 cut(s) | 660, 831, 927, 1037, 1080 |
| PspFI | CCCAGC | 3 cut(s) | 1356, 1394, 1545 |
| PspGI | CCWGG | 5 cut(s) | 660, 831, 927, 1037, 1080 |
| PspLI | CGTACG | 1 cut(s) | 588 |
| PspOMI | GGGCCC | 1 cut(s) | 492 |
| PspPI | GGNCC | 5 cut(s) | 79, 492, 493, 925, 1015 |
| PspPPI | RGGWCCY | 2 cut(s) | 925, 1015 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 581, 613 |
| PstI | CTGCAG | 1 cut(s) | 291 |
| RsaI | GTAC | 6 cut(s) | 125, 324, 590, 675, 1285, 1429 |
| RsaNI | GTAC | 6 cut(s) | 124, 323, 589, 674, 1284, 1428 |
| RseI | CAYNNNNRTG | 2 cut(s) | 422, 1244 |
| SacII | CCGCGG | 1 cut(s) | 1459 |
| SaqAI | TTAA | 3 cut(s) | 21, 602, 1053 |
| Sau3AI | GATC | 4 cut(s) | 99, 392, 691, 982 |
| Sau96I | GGNCC | 5 cut(s) | 79, 492, 493, 925, 1015 |
| SchI | GAGTC | 6 cut(s) | 446, 1037, 1130, 1346, 1357, 1432 |
| SduI | GDGCHC | 4 cut(s) | 50, 496, 723, 1183 |
| SfaNI | GCATC | 5 cut(s) | 767, 880, 1188, 1244, 1512 |
| SfcI | CTRYAG | 1 cut(s) | 287 |
| SfoI | GGCGCC | 3 cut(s) | 303, 1216, 1251 |
| Sfr303I | CCGCGG | 1 cut(s) | 1459 |
| SgrBI | CCGCGG | 1 cut(s) | 1459 |
| SinI | GGWCC | 3 cut(s) | 79, 925, 1015 |
| SmaI | CCCGGG | 1 cut(s) | 1418 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 422, 1244 |
| SmlI | CTYRAG | 3 cut(s) | 20, 788, 1296 |
| SmoI | CTYRAG | 3 cut(s) | 20, 788, 1296 |
| Sse9I | AATT | 1 cut(s) | 944 |
| SseBI | AGGCCT | 1 cut(s) | 400 |
| SspDI | GGCGCC | 3 cut(s) | 301, 1214, 1249 |
| SspMI | CTAG | 3 cut(s) | 173, 273, 549 |
| StuI | AGGCCT | 1 cut(s) | 400 |
| StyI | CCWWGG | 4 cut(s) | 528, 996, 1047, 1218 |
| TaaI | ACNGT | 6 cut(s) | 92, 154, 340, 688, 878, 1059 |
| TaiI | ACGT | 2 cut(s) | 480, 546 |
| TaqI | TCGA | 4 cut(s) | 102, 395, 680, 761 |
| TasI | AATT | 1 cut(s) | 944 |
| TfiI | GAWTC | 1 cut(s) | 575 |
| Tru1I | TTAA | 3 cut(s) | 21, 602, 1053 |
| Tru9I | TTAA | 3 cut(s) | 21, 602, 1053 |
| TscAI | CASTG | 2 cut(s) | 345, 1456 |
| TseFI | GTSAC | 5 cut(s) | 66, 233, 358, 799, 1072 |
| TseI | GCWGC | 5 cut(s) | 286, 643, 976, 1492, 1532 |
| Tsp45I | GTSAC | 5 cut(s) | 66, 233, 358, 799, 1072 |
| TspGWI | ACGGA | 1 cut(s) | 554 |
| TspMI | CCCGGG | 1 cut(s) | 1416 |
| TspRI | CASTG | 2 cut(s) | 345, 1456 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1224 |
| Vha464I | CTTAAG | 1 cut(s) | 20 |
| VpaK11BI | GGWCC | 3 cut(s) | 79, 925, 1015 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 866 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 227 |
| XmaI | CCCGGG | 1 cut(s) | 1416 |
| XspI | CTAG | 3 cut(s) | 173, 273, 549 |