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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 3 cut(s) | 280, 307, 520 |
| AccII | CGCG | 3 cut(s) | 340, 436, 561 |
| AcoI | YGGCCR | 1 cut(s) | 576 |
| AcuI | CTGAAG | 1 cut(s) | 352 |
| AcyI | GRCGYC | 2 cut(s) | 422, 555 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 106, 151, 227, 585 |
| AflIII | ACRYGT | 1 cut(s) | 607 |
| AjiI | CACGTC | 1 cut(s) | 610 |
| AleI | CACNNNNGTG | 1 cut(s) | 147 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 269, 301 |
| AluBI | AGCT | 4 cut(s) | 235, 372, 451, 568 |
| AluI | AGCT | 4 cut(s) | 235, 372, 451, 568 |
| Alw21I | GWGCWC | 1 cut(s) | 453 |
| Alw26I | GTCTC | 4 cut(s) | 77, 144, 476, 496 |
| AoxI | GGCC | 4 cut(s) | 33, 57, 174, 576 |
| ApeKI | GCWGC | 1 cut(s) | 200 |
| AspLEI | GCGC | 2 cut(s) | 220, 342 |
| AspS9I | GGNCC | 3 cut(s) | 4, 58, 175 |
| AsuC2I | CCSGG | 2 cut(s) | 8, 80 |
| AsuHPI | GGTGA | 5 cut(s) | 85, 130, 134, 161, 242 |
| AvaII | GGWCC | 1 cut(s) | 4 |
| BanII | GRGCYC | 1 cut(s) | 453 |
| BbsI | GAAGAC | 1 cut(s) | 200 |
| Bbv12I | GWGCWC | 1 cut(s) | 453 |
| BbvCI | CCTCAGC | 1 cut(s) | 510 |
| BbvI | GCAGC | 1 cut(s) | 212 |
| BccI | CCATC | 3 cut(s) | 149, 303, 587 |
| BceAI | ACGGC | 3 cut(s) | 209, 363, 591 |
| BcnI | CCSGG | 2 cut(s) | 8, 80 |
| BcoDI | GTCTC | 4 cut(s) | 77, 144, 476, 496 |
| BfaI | CTAG | 2 cut(s) | 236, 616 |
| BfmI | CTRYAG | 1 cut(s) | 198 |
| BfoI | RGCGCY | 1 cut(s) | 221 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 182 |
| BisI | GCNGC | 6 cut(s) | 57, 131, 201, 308, 420, 562 |
| BlsI | GCNGC | 6 cut(s) | 58, 132, 202, 309, 421, 563 |
| Bme1390I | CCNGG | 2 cut(s) | 8, 80 |
| Bme18I | GGWCC | 1 cut(s) | 4 |
| BmgBI | CACGTC | 1 cut(s) | 610 |
| BmgT120I | GGNCC | 3 cut(s) | 4, 58, 175 |
| BmiI | GGNNCC | 2 cut(s) | 111, 186 |
| BmrFI | CCNGG | 2 cut(s) | 8, 80 |
| BmsI | GCATC | 2 cut(s) | 111, 117 |
| BpiI | GAAGAC | 1 cut(s) | 200 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 224, 256 |
| BpmI | CTGGAG | 1 cut(s) | 458 |
| Bpu10I | CCTNAGC | 2 cut(s) | 452, 510 |
| BpuMI | CCSGG | 2 cut(s) | 8, 80 |
| BsaHI | GRCGYC | 2 cut(s) | 422, 555 |
| BsaI | GGTCTC | 1 cut(s) | 476 |
| BsaJI | CCNNGG | 5 cut(s) | 45, 105, 145, 531, 559 |
| BsaWI | WCCGGW | 1 cut(s) | 112 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 23, 53, 269, 299 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 106, 151, 227, 585 |
| Bse1I | ACTGG | 4 cut(s) | 57, 100, 136, 510 |
| BseDI | CCNNGG | 5 cut(s) | 45, 105, 145, 531, 559 |
| BseGI | GGATG | 1 cut(s) | 160 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 106, 151, 227, 585 |
| BseMII | CTCAG | 2 cut(s) | 466, 501 |
| BseNI | ACTGG | 4 cut(s) | 57, 100, 136, 510 |
| BseXI | GCAGC | 1 cut(s) | 212 |
| BseYI | CCCAGC | 2 cut(s) | 60, 310 |
| Bsh1236I | CGCG | 3 cut(s) | 340, 436, 561 |
| BshFI | GGCC | 4 cut(s) | 35, 59, 176, 578 |
| BsiHKAI | GWGCWC | 1 cut(s) | 453 |
| BsiSI | CCGG | 3 cut(s) | 7, 80, 113 |
| BslFI | GGGAC | 2 cut(s) | 63, 602 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 106, 151, 227, 585 |
| BsmAI | GTCTC | 4 cut(s) | 77, 144, 476, 496 |
| BsmBI | CGTCTC | 1 cut(s) | 77 |
| BsmFI | GGGAC | 2 cut(s) | 63, 602 |
| BsnI | GGCC | 4 cut(s) | 35, 59, 176, 578 |
| Bso31I | GGTCTC | 1 cut(s) | 476 |
| Bsp1286I | GDGCHC | 1 cut(s) | 453 |
| BspANI | GGCC | 4 cut(s) | 35, 59, 176, 578 |
| BspCNI | CTCAG | 2 cut(s) | 465, 502 |
| BspFNI | CGCG | 3 cut(s) | 340, 436, 561 |
| BspLI | GGNNCC | 2 cut(s) | 111, 186 |
| BspMAI | CTGCAG | 1 cut(s) | 202 |
| BspQI | GCTCTTC | 1 cut(s) | 441 |
| BspTNI | GGTCTC | 1 cut(s) | 476 |
| BsrBI | CCGCTC | 3 cut(s) | 280, 307, 520 |
| BsrI | ACTGG | 4 cut(s) | 57, 100, 136, 510 |
| BssECI | CCNNGG | 5 cut(s) | 45, 105, 145, 531, 559 |
| BssNI | GRCGYC | 2 cut(s) | 422, 555 |
| BssT1I | CCWWGG | 2 cut(s) | 145, 531 |
| Bst4CI | ACNGT | 2 cut(s) | 70, 261 |
| Bst6I | CTCTTC | 2 cut(s) | 296, 441 |
| BstACI | GRCGYC | 2 cut(s) | 422, 555 |
| BstC8I | GCNNGC | 4 cut(s) | 222, 305, 559, 566 |
| BstDEI | CTNAG | 2 cut(s) | 452, 510 |
| BstDSI | CCRYGG | 1 cut(s) | 559 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 149 |
| BstF5I | GGATG | 1 cut(s) | 160 |
| BstFNI | CGCG | 3 cut(s) | 340, 436, 561 |
| BstH2I | RGCGCY | 1 cut(s) | 221 |
| BstHHI | GCGC | 2 cut(s) | 220, 342 |
| BstMAI | GTCTC | 4 cut(s) | 77, 144, 476, 496 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 41, 130, 182, 254 |
| BstSCI | CCNGG | 2 cut(s) | 6, 78 |
| BstSFI | CTRYAG | 1 cut(s) | 198 |
| BstUI | CGCG | 3 cut(s) | 340, 436, 561 |
| BstV1I | GCAGC | 1 cut(s) | 212 |
| BstV2I | GAAGAC | 1 cut(s) | 200 |
| BsuRI | GGCC | 4 cut(s) | 35, 59, 176, 578 |
| BtgI | CCRYGG | 1 cut(s) | 559 |
| BtrI | CACGTC | 1 cut(s) | 610 |
| BtsCI | GGATG | 1 cut(s) | 160 |
| Cac8I | GCNNGC | 4 cut(s) | 222, 305, 559, 566 |
| CfoI | GCGC | 2 cut(s) | 220, 342 |
| Cfr13I | GGNCC | 3 cut(s) | 4, 58, 175 |
| Cfr42I | CCGCGG | 1 cut(s) | 562 |
| CseI | GACGC | 2 cut(s) | 411, 563 |
| CviAII | CATG | 2 cut(s) | 37, 404 |
| DdeI | CTNAG | 2 cut(s) | 452, 510 |
| EaeI | YGGCCR | 1 cut(s) | 576 |
| Eam1104I | CTCTTC | 2 cut(s) | 296, 441 |
| EarI | CTCTTC | 2 cut(s) | 296, 441 |
| EciI | GGCGGA | 2 cut(s) | 26, 551 |
| Ecl136II | GAGCTC | 1 cut(s) | 451 |
| Eco130I | CCWWGG | 2 cut(s) | 145, 531 |
| Eco24I | GRGCYC | 1 cut(s) | 453 |
| Eco31I | GGTCTC | 1 cut(s) | 476 |
| Eco47I | GGWCC | 1 cut(s) | 4 |
| Eco53kI | GAGCTC | 1 cut(s) | 451 |
| Eco57I | CTGAAG | 1 cut(s) | 352 |
| EcoICRI | GAGCTC | 1 cut(s) | 451 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 149 |
| EcoT14I | CCWWGG | 2 cut(s) | 145, 531 |
| EcoT38I | GRGCYC | 1 cut(s) | 453 |
| ErhI | CCWWGG | 2 cut(s) | 145, 531 |
| Esp3I | CGTCTC | 1 cut(s) | 77 |
| FaeI | CATG | 2 cut(s) | 40, 407 |
| FaiI | YATR | 9 cut(s) | 38, 42, 255, 266, 301, 335, 405, 410, 549 |
| FaqI | GGGAC | 2 cut(s) | 63, 602 |
| FatI | CATG | 2 cut(s) | 36, 403 |
| FauI | CCCGC | 7 cut(s) | 229, 273, 322, 481, 513, 566, 579 |
| Fnu4HI | GCNGC | 6 cut(s) | 57, 131, 201, 308, 420, 562 |
| FokI | GGATG | 1 cut(s) | 167 |
| FriOI | GRGCYC | 1 cut(s) | 453 |
| Fsp4HI | GCNGC | 6 cut(s) | 57, 131, 201, 308, 420, 562 |
| FspBI | CTAG | 2 cut(s) | 236, 616 |
| GlaI | GCGC | 2 cut(s) | 219, 341 |
| GluI | GCNGC | 6 cut(s) | 57, 131, 201, 308, 420, 562 |
| GsaI | CCCAGC | 2 cut(s) | 64, 314 |
| GsuI | CTGGAG | 1 cut(s) | 458 |
| HaeII | RGCGCY | 1 cut(s) | 221 |
| HaeIII | GGCC | 4 cut(s) | 35, 59, 176, 578 |
| HapII | CCGG | 3 cut(s) | 7, 80, 113 |
| HgaI | GACGC | 2 cut(s) | 411, 563 |
| HhaI | GCGC | 2 cut(s) | 220, 342 |
| Hin1I | GRCGYC | 2 cut(s) | 422, 555 |
| Hin1II | CATG | 2 cut(s) | 40, 407 |
| Hin6I | GCGC | 2 cut(s) | 218, 340 |
| HinP1I | GCGC | 2 cut(s) | 218, 340 |
| HinfI | GANTC | 1 cut(s) | 239 |
| HpaII | CCGG | 3 cut(s) | 7, 80, 113 |
| HphI | GGTGA | 5 cut(s) | 85, 130, 134, 161, 242 |
| Hpy166II | GTNNAC | 1 cut(s) | 76 |
| Hpy188I | TCNGA | 2 cut(s) | 106, 467 |
| Hpy188III | TCNNGA | 1 cut(s) | 475 |
| Hpy8I | GTNNAC | 1 cut(s) | 76 |
| Hpy99I | CGWCG | 3 cut(s) | 230, 349, 427 |
| HpyAV | CCTTC | 3 cut(s) | 166, 266, 376 |
| HpyCH4III | ACNGT | 2 cut(s) | 70, 261 |
| HpyCH4IV | ACGT | 2 cut(s) | 86, 609 |
| HpyCH4V | TGCA | 2 cut(s) | 200, 257 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 41, 130, 182, 254 |
| HpyF3I | CTNAG | 2 cut(s) | 452, 510 |
| HpySE526I | ACGT | 2 cut(s) | 86, 609 |
| Hsp92I | GRCGYC | 2 cut(s) | 422, 555 |
| Hsp92II | CATG | 2 cut(s) | 40, 407 |
| HspAI | GCGC | 2 cut(s) | 218, 340 |
| KspI | CCGCGG | 1 cut(s) | 562 |
| LguI | GCTCTTC | 1 cut(s) | 441 |
| LmnI | GCTCC | 3 cut(s) | 190, 277, 595 |
| Lsp1109I | GCAGC | 1 cut(s) | 212 |
| LweI | GCATC | 2 cut(s) | 111, 117 |
| MaeI | CTAG | 2 cut(s) | 236, 616 |
| MaeII | ACGT | 2 cut(s) | 86, 609 |
| MbiI | CCGCTC | 3 cut(s) | 280, 307, 520 |
| MboII | GAAGA | 5 cut(s) | 181, 205, 283, 458, 470 |
| MfeI | CAATTG | 1 cut(s) | 351 |
| MhlI | GDGCHC | 1 cut(s) | 453 |
| MluCI | AATT | 2 cut(s) | 22, 351 |
| MlyI | GAGTC | 1 cut(s) | 233 |
| MslI | CAYNNNNRTG | 1 cut(s) | 147 |
| MspA1I | CMGCKG | 2 cut(s) | 203, 561 |
| MspI | CCGG | 3 cut(s) | 7, 80, 113 |
| MspR9I | CCNGG | 2 cut(s) | 8, 80 |
| MunI | CAATTG | 1 cut(s) | 351 |
| MvnI | CGCG | 3 cut(s) | 340, 436, 561 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 41, 130, 182, 254 |
| NciI | CCSGG | 2 cut(s) | 8, 80 |
| NlaIII | CATG | 2 cut(s) | 40, 407 |
| NlaIV | GGNNCC | 2 cut(s) | 111, 186 |
| NmeAIII | GCCGAG | 3 cut(s) | 70, 274, 353 |
| OliI | CACNNNNGTG | 1 cut(s) | 147 |
| PciSI | GCTCTTC | 1 cut(s) | 441 |
| PkrI | GCNGC | 6 cut(s) | 58, 132, 202, 309, 421, 563 |
| PleI | GAGTC | 1 cut(s) | 233 |
| PpsI | GAGTC | 1 cut(s) | 233 |
| Psp124BI | GAGCTC | 1 cut(s) | 453 |
| PspFI | CCCAGC | 2 cut(s) | 60, 310 |
| PspN4I | GGNNCC | 2 cut(s) | 111, 186 |
| PspPI | GGNCC | 3 cut(s) | 4, 58, 175 |
| PstI | CTGCAG | 1 cut(s) | 202 |
| RseI | CAYNNNNRTG | 1 cut(s) | 147 |
| SacI | GAGCTC | 1 cut(s) | 453 |
| SacII | CCGCGG | 1 cut(s) | 562 |
| SapI | GCTCTTC | 1 cut(s) | 441 |
| SatI | GCNGC | 6 cut(s) | 57, 131, 201, 308, 420, 562 |
| Sau96I | GGNCC | 3 cut(s) | 4, 58, 175 |
| SchI | GAGTC | 1 cut(s) | 233 |
| ScrFI | CCNGG | 2 cut(s) | 8, 80 |
| SduI | GDGCHC | 1 cut(s) | 453 |
| SfaNI | GCATC | 2 cut(s) | 111, 117 |
| SfcI | CTRYAG | 1 cut(s) | 198 |
| Sfr303I | CCGCGG | 1 cut(s) | 562 |
| SgrBI | CCGCGG | 1 cut(s) | 562 |
| SinI | GGWCC | 1 cut(s) | 4 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 147 |
| Sse9I | AATT | 2 cut(s) | 22, 351 |
| SspMI | CTAG | 2 cut(s) | 236, 616 |
| SstI | GAGCTC | 1 cut(s) | 453 |
| StyD4I | CCNGG | 2 cut(s) | 6, 78 |
| StyI | CCWWGG | 2 cut(s) | 145, 531 |
| TaaI | ACNGT | 2 cut(s) | 70, 261 |
| TaiI | ACGT | 2 cut(s) | 89, 612 |
| TaqI | TCGA | 3 cut(s) | 191, 425, 516 |
| TasI | AATT | 2 cut(s) | 22, 351 |
| TauI | GCSGC | 5 cut(s) | 59, 133, 310, 422, 564 |
| TseI | GCWGC | 1 cut(s) | 200 |
| TspDTI | ATGAA | 1 cut(s) | 618 |
| VpaK11BI | GGWCC | 1 cut(s) | 4 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 149 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 143 |
| XspI | CTAG | 2 cut(s) | 236, 616 |