Putative gypsy type transposon
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 987 |
| Acc36I | ACCTGC | 2 cut(s) | 337, 1036 |
| AccB1I | GGYRCC | 3 cut(s) | 913, 1724, 1853 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 225, 1770 |
| AccBSI | CCGCTC | 4 cut(s) | 521, 1162, 1189, 1860 |
| AccII | CGCG | 7 cut(s) | 561, 563, 720, 948, 1133, 1647, 2001 |
| AclWI | GGATC | 3 cut(s) | 88, 1555, 2011 |
| AcoI | YGGCCR | 6 cut(s) | 936, 1104, 1452, 1536, 1653, 1713 |
| AcsI | RAATTY | 1 cut(s) | 174 |
| AcuI | CTGAAG | 4 cut(s) | 47, 1234, 1550, 2064 |
| AcvI | CACGTG | 1 cut(s) | 1047 |
| AcyI | GRCGYC | 4 cut(s) | 696, 984, 1304, 1405 |
| AfaI | GTAC | 7 cut(s) | 320, 533, 1136, 1221, 1228, 1673, 1972 |
| AflIII | ACRYGT | 1 cut(s) | 222 |
| AgsI | TTSAA | 3 cut(s) | 173, 469, 665 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1986 |
| AjnI | CCWGG | 4 cut(s) | 138, 1317, 1377, 1473 |
| AluBI | AGCT | 5 cut(s) | 61, 382, 763, 1327, 1805 |
| AluI | AGCT | 5 cut(s) | 61, 382, 763, 1327, 1805 |
| Alw21I | GWGCWC | 3 cut(s) | 123, 934, 957 |
| Alw26I | GTCTC | 4 cut(s) | 788, 1018, 1464, 1973 |
| Alw44I | GTGCAC | 2 cut(s) | 119, 953 |
| AlwI | GGATC | 3 cut(s) | 88, 1555, 2011 |
| Ama87I | CYCGRG | 5 cut(s) | 543, 1021, 1073, 1861, 1959 |
| ApaLI | GTGCAC | 2 cut(s) | 119, 953 |
| ApoI | RAATTY | 1 cut(s) | 174 |
| AspS9I | GGNCC | 8 cut(s) | 278, 423, 715, 1351, 1375, 1835, 1951, 2070 |
| AsuC2I | CCSGG | 6 cut(s) | 48, 675, 943, 1960, 1961, 2069 |
| AsuHPI | GGTGA | 5 cut(s) | 67, 796, 979, 1169, 1625 |
| AsuNHI | GCTAGC | 1 cut(s) | 1588 |
| AvaI | CYCGRG | 5 cut(s) | 543, 1021, 1073, 1861, 1959 |
| AvaII | GGWCC | 4 cut(s) | 278, 423, 715, 1375 |
| BaeGI | GKGCMC | 4 cut(s) | 123, 957, 1729, 1858 |
| BanI | GGYRCC | 3 cut(s) | 913, 1724, 1853 |
| BanII | GRGCYC | 1 cut(s) | 1022 |
| BauI | CACGAG | 3 cut(s) | 654, 1108, 1286 |
| BbrPI | CACGTG | 1 cut(s) | 1047 |
| BbsI | GAAGAC | 1 cut(s) | 605 |
| Bbv12I | GWGCWC | 3 cut(s) | 123, 934, 957 |
| BbvCI | CCTCAGC | 1 cut(s) | 1635 |
| BccI | CCATC | 5 cut(s) | 441, 772, 1148, 1844, 1961 |
| BceAI | ACGGC | 5 cut(s) | 101, 272, 863, 1272, 1439 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1064, 1098 |
| BciT130I | CCWGG | 4 cut(s) | 140, 1319, 1379, 1475 |
| BciVI | GTATCC | 1 cut(s) | 1939 |
| BcnI | CCSGG | 6 cut(s) | 48, 675, 943, 1960, 1961, 2069 |
| BcoDI | GTCTC | 4 cut(s) | 788, 1018, 1464, 1973 |
| BfaI | CTAG | 7 cut(s) | 158, 740, 1118, 1584, 1589, 1607, 1730 |
| BfmI | CTRYAG | 2 cut(s) | 1355, 1748 |
| BfoI | RGCGCY | 4 cut(s) | 245, 331, 377, 1884 |
| BfuAI | ACCTGC | 2 cut(s) | 337, 1036 |
| BfuI | GTATCC | 1 cut(s) | 1939 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 884 |
| Bme18I | GGWCC | 4 cut(s) | 278, 423, 715, 1375 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1986 |
| BmeT110I | CYCGRG | 5 cut(s) | 543, 1021, 1073, 1861, 1959 |
| BmgT120I | GGNCC | 8 cut(s) | 278, 423, 715, 1351, 1375, 1835, 1951, 2070 |
| BmrI | ACTGGG | 2 cut(s) | 1780, 1912 |
| BmsI | GCATC | 5 cut(s) | 24, 225, 1426, 1801, 2044 |
| BmtI | GCTAGC | 1 cut(s) | 1592 |
| BmuI | ACTGGG | 2 cut(s) | 1780, 1912 |
| BpiI | GAAGAC | 1 cut(s) | 605 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 74, 106 |
| BpmI | CTGGAG | 1 cut(s) | 1349 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1635, 1806 |
| BpuEI | CTTGAG | 1 cut(s) | 1827 |
| BpuMI | CCSGG | 6 cut(s) | 48, 675, 943, 1960, 1961, 2069 |
| BsaAI | YACGTR | 2 cut(s) | 322, 1047 |
| BsaHI | GRCGYC | 4 cut(s) | 696, 984, 1304, 1405 |
| BsaI | GGTCTC | 3 cut(s) | 1018, 1464, 1973 |
| BsaWI | WCCGGW | 2 cut(s) | 39, 823 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 470, 500, 1157, 1187 |
| Bse118I | RCCGGY | 5 cut(s) | 21, 363, 934, 1721, 1789 |
| Bse1I | ACTGG | 5 cut(s) | 318, 625, 898, 1775, 1918 |
| BseBI | CCWGG | 4 cut(s) | 140, 1319, 1379, 1475 |
| BseGI | GGATG | 7 cut(s) | 39, 85, 452, 1216, 1816, 1900, 1972 |
| BseMII | CTCAG | 5 cut(s) | 347, 386, 807, 1626, 1829 |
| BseNI | ACTGG | 5 cut(s) | 318, 625, 898, 1775, 1918 |
| BseRI | GAGGAG | 1 cut(s) | 1355 |
| BseSI | GKGCMC | 4 cut(s) | 123, 957, 1729, 1858 |
| BseX3I | CGGCCG | 1 cut(s) | 1653 |
| BseYI | CCCAGC | 5 cut(s) | 624, 973, 1192, 1902, 1937 |
| BsgI | GTGCAG | 1 cut(s) | 1268 |
| Bsh1236I | CGCG | 7 cut(s) | 561, 563, 720, 948, 1133, 1647, 2001 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1656, 1794 |
| BshNI | GGYRCC | 3 cut(s) | 913, 1724, 1853 |
| BsiEI | CGRYCG | 2 cut(s) | 1656, 1794 |
| BsiHKAI | GWGCWC | 3 cut(s) | 123, 934, 957 |
| BsiHKCI | CYCGRG | 5 cut(s) | 543, 1021, 1073, 1861, 1959 |
| BsiWI | CGTACG | 1 cut(s) | 1134 |
| BslFI | GGGAC | 4 cut(s) | 291, 436, 1376, 1501 |
| BsmAI | GTCTC | 4 cut(s) | 788, 1018, 1464, 1973 |
| BsmBI | CGTCTC | 1 cut(s) | 788 |
| BsmFI | GGGAC | 4 cut(s) | 291, 436, 1376, 1501 |
| Bso31I | GGTCTC | 3 cut(s) | 1018, 1464, 1973 |
| BsoBI | CYCGRG | 5 cut(s) | 543, 1021, 1073, 1861, 1959 |
| Bsp1286I | GDGCHC | 6 cut(s) | 123, 934, 957, 1022, 1729, 1858 |
| Bsp143I | GATC | 5 cut(s) | 93, 640, 1528, 1560, 2003 |
| Bsp19I | CCATGG | 1 cut(s) | 711 |
| BspCNI | CTCAG | 5 cut(s) | 348, 387, 808, 1627, 1828 |
| BspFNI | CGCG | 7 cut(s) | 561, 563, 720, 948, 1133, 1647, 2001 |
| BspMAI | CTGCAG | 2 cut(s) | 1359, 1752 |
| BspMI | ACCTGC | 2 cut(s) | 337, 1036 |
| BspOI | GCTAGC | 1 cut(s) | 1592 |
| BspPI | GGATC | 3 cut(s) | 88, 1555, 2011 |
| BspT107I | GGYRCC | 3 cut(s) | 913, 1724, 1853 |
| BspTNI | GGTCTC | 3 cut(s) | 1018, 1464, 1973 |
| BsrBI | CCGCTC | 4 cut(s) | 521, 1162, 1189, 1860 |
| BsrFI | RCCGGY | 5 cut(s) | 21, 363, 934, 1721, 1789 |
| BsrI | ACTGG | 5 cut(s) | 318, 625, 898, 1775, 1918 |
| BssAI | RCCGGY | 5 cut(s) | 21, 363, 934, 1721, 1789 |
| BssMI | GATC | 5 cut(s) | 93, 640, 1528, 1560, 2003 |
| BssNI | GRCGYC | 4 cut(s) | 696, 984, 1304, 1405 |
| BssSI | CACGAG | 3 cut(s) | 654, 1108, 1286 |
| BssT1I | CCWWGG | 3 cut(s) | 331, 711, 1716 |
| Bst2BI | CACGAG | 3 cut(s) | 654, 1108, 1286 |
| Bst2UI | CCWGG | 4 cut(s) | 140, 1319, 1379, 1475 |
| Bst4CI | ACNGT | 7 cut(s) | 76, 286, 967, 991, 1224, 1231, 1424 |
| Bst6I | CTCTTC | 1 cut(s) | 546 |
| BstACI | GRCGYC | 4 cut(s) | 696, 984, 1304, 1405 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 110, 1436 |
| BstBAI | YACGTR | 2 cut(s) | 322, 1047 |
| BstDEI | CTNAG | 7 cut(s) | 356, 395, 806, 816, 1635, 1806, 1815 |
| BstDSI | CCRYGG | 3 cut(s) | 711, 1441, 1999 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1412 |
| BstF5I | GGATG | 7 cut(s) | 39, 85, 452, 1216, 1816, 1900, 1972 |
| BstFNI | CGCG | 7 cut(s) | 561, 563, 720, 948, 1133, 1647, 2001 |
| BstH2I | RGCGCY | 4 cut(s) | 245, 331, 377, 1884 |
| BstKTI | GATC | 5 cut(s) | 96, 643, 1531, 1563, 2006 |
| BstMAI | GTCTC | 4 cut(s) | 788, 1018, 1464, 1973 |
| BstMBI | GATC | 5 cut(s) | 93, 640, 1528, 1560, 2003 |
| BstMCI | CGRYCG | 2 cut(s) | 1656, 1794 |
| BstNI | CCWGG | 4 cut(s) | 140, 1319, 1379, 1475 |
| BstNSI | RCATGY | 2 cut(s) | 226, 1067 |
| BstSFI | CTRYAG | 2 cut(s) | 1355, 1748 |
| BstSLI | GKGCMC | 4 cut(s) | 123, 957, 1729, 1858 |
| BstUI | CGCG | 7 cut(s) | 561, 563, 720, 948, 1133, 1647, 2001 |
| BstV2I | GAAGAC | 1 cut(s) | 605 |
| BstX2I | RGATCY | 2 cut(s) | 1560, 2003 |
| BstYI | RGATCY | 2 cut(s) | 1560, 2003 |
| BstZI | CGGCCG | 1 cut(s) | 1653 |
| BsuI | GTATCC | 1 cut(s) | 1939 |
| BtgI | CCRYGG | 3 cut(s) | 711, 1441, 1999 |
| BtsCI | GGATG | 7 cut(s) | 39, 85, 452, 1216, 1816, 1900, 1972 |
| BtsIMutI | CAGTG | 1 cut(s) | 972 |
| BveI | ACCTGC | 2 cut(s) | 337, 1036 |
| CciNI | GCGGCCGC | 1 cut(s) | 1653 |
| Cfr10I | RCCGGY | 5 cut(s) | 21, 363, 934, 1721, 1789 |
| Cfr13I | GGNCC | 8 cut(s) | 278, 423, 715, 1351, 1375, 1835, 1951, 2070 |
| Cfr42I | CCGCGG | 1 cut(s) | 2002 |
| Cfr9I | CCCGGG | 1 cut(s) | 1959 |
| CseI | GACGC | 6 cut(s) | 53, 704, 1293, 1413, 1436, 2048 |
| Csp6I | GTAC | 7 cut(s) | 319, 532, 1135, 1220, 1227, 1672, 1971 |
| CviAII | CATG | 6 cut(s) | 223, 406, 712, 838, 1064, 1786 |
| CviQI | GTAC | 7 cut(s) | 319, 532, 1135, 1220, 1227, 1672, 1971 |
| DdeI | CTNAG | 7 cut(s) | 356, 395, 806, 816, 1635, 1806, 1815 |
| DpnI | GATC | 5 cut(s) | 95, 642, 1530, 1562, 2005 |
| DpnII | GATC | 5 cut(s) | 93, 640, 1528, 1560, 2003 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1986 |
| EaeI | YGGCCR | 6 cut(s) | 936, 1104, 1452, 1536, 1653, 1713 |
| EagI | CGGCCG | 1 cut(s) | 1653 |
| Eam1104I | CTCTTC | 1 cut(s) | 546 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1986 |
| EarI | CTCTTC | 1 cut(s) | 546 |
| EciI | GGCGGA | 8 cut(s) | 125, 305, 601, 660, 1059, 1700, 1907, 1979 |
| EclXI | CGGCCG | 1 cut(s) | 1653 |
| Eco130I | CCWWGG | 3 cut(s) | 331, 711, 1716 |
| Eco147I | AGGCCT | 1 cut(s) | 89 |
| Eco24I | GRGCYC | 1 cut(s) | 1022 |
| Eco31I | GGTCTC | 3 cut(s) | 1018, 1464, 1973 |
| Eco47I | GGWCC | 4 cut(s) | 278, 423, 715, 1375 |
| Eco52I | CGGCCG | 1 cut(s) | 1653 |
| Eco57I | CTGAAG | 4 cut(s) | 47, 1234, 1550, 2064 |
| Eco72I | CACGTG | 1 cut(s) | 1047 |
| Eco88I | CYCGRG | 5 cut(s) | 543, 1021, 1073, 1861, 1959 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1412 |
| EcoO109I | RGGNCCY | 1 cut(s) | 423 |
| EcoRII | CCWGG | 4 cut(s) | 138, 1317, 1377, 1473 |
| EcoT14I | CCWWGG | 3 cut(s) | 331, 711, 1716 |
| EcoT38I | GRGCYC | 1 cut(s) | 1022 |
| ErhI | CCWWGG | 3 cut(s) | 331, 711, 1716 |
| Esp3I | CGTCTC | 1 cut(s) | 788 |
| FaeI | CATG | 6 cut(s) | 226, 409, 715, 841, 1067, 1789 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1867, 1899 |
| FaqI | GGGAC | 4 cut(s) | 291, 436, 1376, 1501 |
| FatI | CATG | 6 cut(s) | 222, 405, 711, 837, 1063, 1785 |
| FokI | GGATG | 7 cut(s) | 46, 92, 459, 1223, 1823, 1907, 1979 |
| FriOI | GRGCYC | 1 cut(s) | 1022 |
| FspBI | CTAG | 7 cut(s) | 158, 740, 1118, 1584, 1589, 1607, 1730 |
| GsaI | CCCAGC | 5 cut(s) | 628, 977, 1196, 1906, 1941 |
| GsuI | CTGGAG | 1 cut(s) | 1349 |
| HaeII | RGCGCY | 4 cut(s) | 245, 331, 377, 1884 |
| HgaI | GACGC | 6 cut(s) | 53, 704, 1293, 1413, 1436, 2048 |
| Hin1I | GRCGYC | 4 cut(s) | 696, 984, 1304, 1405 |
| Hin1II | CATG | 6 cut(s) | 226, 409, 715, 841, 1067, 1789 |
| HincII | GTYRAC | 3 cut(s) | 19, 1237, 1704 |
| HindII | GTYRAC | 3 cut(s) | 19, 1237, 1704 |
| HphI | GGTGA | 5 cut(s) | 67, 796, 979, 1169, 1625 |
| Hpy166II | GTNNAC | 9 cut(s) | 19, 121, 319, 352, 787, 955, 1227, 1237, 1704 |
| Hpy188I | TCNGA | 5 cut(s) | 502, 518, 760, 817, 2008 |
| Hpy188III | TCNNGA | 3 cut(s) | 545, 692, 1023 |
| Hpy8I | GTNNAC | 9 cut(s) | 19, 121, 319, 352, 787, 955, 1227, 1237, 1704 |
| Hpy99I | CGWCG | 5 cut(s) | 487, 1235, 1309, 1407, 1460 |
| HpyCH4III | ACNGT | 7 cut(s) | 76, 286, 967, 991, 1224, 1231, 1424 |
| HpyCH4IV | ACGT | 5 cut(s) | 321, 485, 797, 984, 1046 |
| HpyCH4V | TGCA | 8 cut(s) | 121, 301, 339, 955, 1285, 1357, 1525, 1750 |
| HpyF3I | CTNAG | 7 cut(s) | 356, 395, 806, 816, 1635, 1806, 1815 |
| HpySE526I | ACGT | 5 cut(s) | 321, 485, 797, 984, 1046 |
| Hsp92I | GRCGYC | 4 cut(s) | 696, 984, 1304, 1405 |
| Hsp92II | CATG | 6 cut(s) | 226, 409, 715, 841, 1067, 1789 |
| KroI | GCCGGC | 1 cut(s) | 363 |
| KroNI | GCCGGC | 1 cut(s) | 365 |
| KspI | CCGCGG | 1 cut(s) | 2002 |
| Kzo9I | GATC | 5 cut(s) | 93, 640, 1528, 1560, 2003 |
| LmnI | GCTCC | 9 cut(s) | 42, 371, 478, 1003, 1072, 1399, 1504, 1641, 1760 |
| LweI | GCATC | 5 cut(s) | 24, 225, 1426, 1801, 2044 |
| MaeI | CTAG | 7 cut(s) | 158, 740, 1118, 1584, 1589, 1607, 1730 |
| MaeII | ACGT | 5 cut(s) | 321, 485, 797, 984, 1046 |
| MaeIII | GTNAC | 6 cut(s) | 145, 692, 863, 985, 1265, 1424 |
| MalI | GATC | 5 cut(s) | 95, 642, 1530, 1562, 2005 |
| MbiI | CCGCTC | 4 cut(s) | 521, 1162, 1189, 1860 |
| MboI | GATC | 5 cut(s) | 93, 640, 1528, 1560, 2003 |
| MboII | GAAGA | 5 cut(s) | 560, 563, 605, 787, 1063 |
| MflI | RGATCY | 2 cut(s) | 1560, 2003 |
| MhlI | GDGCHC | 6 cut(s) | 123, 934, 957, 1022, 1729, 1858 |
| MluCI | AATT | 3 cut(s) | 174, 726, 1490 |
| MlyI | GAGTC | 8 cut(s) | 367, 535, 646, 697, 1115, 1676, 1892, 1903 |
| MmeI | TCCRAC | 4 cut(s) | 480, 981, 1482, 1902 |
| MroNI | GCCGGC | 1 cut(s) | 363 |
| MseI | TTAA | 2 cut(s) | 495, 1599 |
| MspA1I | CMGCKG | 7 cut(s) | 70, 977, 1037, 1570, 1661, 1906, 2001 |
| MvaI | CCWGG | 4 cut(s) | 140, 1319, 1379, 1475 |
| MvnI | CGCG | 7 cut(s) | 561, 563, 720, 948, 1133, 1647, 2001 |
| NaeI | GCCGGC | 1 cut(s) | 365 |
| NciI | CCSGG | 6 cut(s) | 48, 675, 943, 1960, 1961, 2069 |
| NcoI | CCATGG | 1 cut(s) | 711 |
| NdeII | GATC | 5 cut(s) | 93, 640, 1528, 1560, 2003 |
| NgoMIV | GCCGGC | 1 cut(s) | 363 |
| NheI | GCTAGC | 1 cut(s) | 1588 |
| NlaIII | CATG | 6 cut(s) | 226, 409, 715, 841, 1067, 1789 |
| NmeAIII | GCCGAG | 2 cut(s) | 1165, 1618 |
| NmuCI | GTSAC | 6 cut(s) | 145, 692, 863, 985, 1265, 1424 |
| NotI | GCGGCCGC | 1 cut(s) | 1653 |
| NspI | RCATGY | 2 cut(s) | 226, 1067 |
| PaeR7I | CTCGAG | 2 cut(s) | 543, 1021 |
| PceI | AGGCCT | 1 cut(s) | 89 |
| PciI | ACATGT | 1 cut(s) | 222 |
| PdiI | GCCGGC | 1 cut(s) | 365 |
| PfeI | GAWTC | 3 cut(s) | 401, 589, 1574 |
| Pfl23II | CGTACG | 1 cut(s) | 1134 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 225, 1770 |
| PleI | GAGTC | 8 cut(s) | 366, 535, 646, 696, 1115, 1675, 1892, 1903 |
| PmaCI | CACGTG | 1 cut(s) | 1047 |
| PmlI | CACGTG | 1 cut(s) | 1047 |
| PpsI | GAGTC | 8 cut(s) | 366, 535, 646, 696, 1115, 1675, 1892, 1903 |
| Ppu21I | YACGTR | 2 cut(s) | 322, 1047 |
| PpuMI | RGGWCCY | 1 cut(s) | 423 |
| PscI | ACATGT | 1 cut(s) | 222 |
| Psp5II | RGGWCCY | 1 cut(s) | 423 |
| Psp6I | CCWGG | 4 cut(s) | 138, 1317, 1377, 1473 |
| PspCI | CACGTG | 1 cut(s) | 1047 |
| PspFI | CCCAGC | 5 cut(s) | 624, 973, 1192, 1902, 1937 |
| PspGI | CCWGG | 4 cut(s) | 138, 1317, 1377, 1473 |
| PspLI | CGTACG | 1 cut(s) | 1134 |
| PspPI | GGNCC | 8 cut(s) | 278, 423, 715, 1351, 1375, 1835, 1951, 2070 |
| PspPPI | RGGWCCY | 1 cut(s) | 423 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1127, 1159 |
| PstI | CTGCAG | 2 cut(s) | 1359, 1752 |
| PsuI | RGATCY | 2 cut(s) | 1560, 2003 |
| RsaI | GTAC | 7 cut(s) | 320, 533, 1136, 1221, 1228, 1673, 1972 |
| RsaNI | GTAC | 7 cut(s) | 319, 532, 1135, 1220, 1227, 1672, 1971 |
| SacII | CCGCGG | 1 cut(s) | 2002 |
| SaqAI | TTAA | 2 cut(s) | 495, 1599 |
| Sau3AI | GATC | 5 cut(s) | 93, 640, 1528, 1560, 2003 |
| Sau96I | GGNCC | 8 cut(s) | 278, 423, 715, 1351, 1375, 1835, 1951, 2070 |
| SchI | GAGTC | 8 cut(s) | 367, 535, 646, 697, 1115, 1676, 1892, 1903 |
| SduI | GDGCHC | 6 cut(s) | 123, 934, 957, 1022, 1729, 1858 |
| SfaNI | GCATC | 5 cut(s) | 24, 225, 1426, 1801, 2044 |
| SfcI | CTRYAG | 2 cut(s) | 1355, 1748 |
| Sfr274I | CTCGAG | 2 cut(s) | 543, 1021 |
| Sfr303I | CCGCGG | 1 cut(s) | 2002 |
| SgrBI | CCGCGG | 1 cut(s) | 2002 |
| SinI | GGWCC | 4 cut(s) | 278, 423, 715, 1375 |
| SlaI | CTCGAG | 2 cut(s) | 543, 1021 |
| SmaI | CCCGGG | 1 cut(s) | 1961 |
| SmlI | CTYRAG | 3 cut(s) | 543, 1021, 1842 |
| SmoI | CTYRAG | 3 cut(s) | 543, 1021, 1842 |
| Sse9I | AATT | 3 cut(s) | 174, 726, 1490 |
| SseBI | AGGCCT | 1 cut(s) | 89 |
| SspMI | CTAG | 7 cut(s) | 158, 740, 1118, 1584, 1589, 1607, 1730 |
| StuI | AGGCCT | 1 cut(s) | 89 |
| StyI | CCWWGG | 3 cut(s) | 331, 711, 1716 |
| TaaI | ACNGT | 7 cut(s) | 76, 286, 967, 991, 1224, 1231, 1424 |
| TaiI | ACGT | 5 cut(s) | 324, 488, 800, 987, 1049 |
| TaqI | TCGA | 6 cut(s) | 92, 544, 639, 1022, 1060, 1307 |
| TaqII | GACCGA | 2 cut(s) | 295, 1721 |
| TasI | AATT | 3 cut(s) | 174, 726, 1490 |
| TfiI | GAWTC | 3 cut(s) | 401, 589, 1574 |
| Tru1I | TTAA | 2 cut(s) | 495, 1599 |
| Tru9I | TTAA | 2 cut(s) | 495, 1599 |
| TscAI | CASTG | 1 cut(s) | 972 |
| TseFI | GTSAC | 6 cut(s) | 145, 692, 863, 985, 1265, 1424 |
| Tsp45I | GTSAC | 6 cut(s) | 145, 692, 863, 985, 1265, 1424 |
| TspGWI | ACGGA | 1 cut(s) | 1495 |
| TspMI | CCCGGG | 1 cut(s) | 1959 |
| TspRI | CASTG | 1 cut(s) | 972 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 225, 1770 |
| VneI | GTGCAC | 2 cut(s) | 119, 953 |
| VpaK11BI | GGWCC | 4 cut(s) | 278, 423, 715, 1375 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1412 |
| XapI | RAATTY | 1 cut(s) | 174 |
| XceI | RCATGY | 2 cut(s) | 226, 1067 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 854, 946 |
| XhoI | CTCGAG | 2 cut(s) | 543, 1021 |
| XmaI | CCCGGG | 1 cut(s) | 1959 |
| XspI | CTAG | 7 cut(s) | 158, 740, 1118, 1584, 1589, 1607, 1730 |
| ZraI | GACGTC | 1 cut(s) | 985 |