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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 291 |
| AccB1I | GGYRCC | 2 cut(s) | 151, 255 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 169 |
| AccBSI | CCGCTC | 1 cut(s) | 54 |
| AccII | CGCG | 1 cut(s) | 384 |
| AccIII | TCCGGA | 1 cut(s) | 11 |
| AclWI | GGATC | 2 cut(s) | 387, 501 |
| AcsI | RAATTY | 1 cut(s) | 7 |
| AcuI | CTGAAG | 2 cut(s) | 80, 401 |
| AcyI | GRCGYC | 3 cut(s) | 152, 256, 288 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 169, 375, 435 |
| AgsI | TTSAA | 2 cut(s) | 176, 328 |
| AjiI | CACGTC | 1 cut(s) | 343 |
| AjnI | CCWGG | 4 cut(s) | 147, 168, 207, 434 |
| AleI | CACNNNNGTG | 1 cut(s) | 47 |
| AluBI | AGCT | 7 cut(s) | 105, 184, 217, 352, 421, 457, 485 |
| AluI | AGCT | 7 cut(s) | 105, 184, 217, 352, 421, 457, 485 |
| Alw21I | GWGCWC | 2 cut(s) | 75, 107 |
| Alw26I | GTCTC | 2 cut(s) | 209, 349 |
| Alw44I | GTGCAC | 1 cut(s) | 71 |
| AlwI | GGATC | 2 cut(s) | 387, 501 |
| Aor13HI | TCCGGA | 1 cut(s) | 11 |
| AoxI | GGCC | 2 cut(s) | 55, 108 |
| ApaLI | GTGCAC | 1 cut(s) | 71 |
| ApeKI | GCWGC | 1 cut(s) | 373 |
| ApoI | RAATTY | 1 cut(s) | 7 |
| AspA2I | CCTAGG | 1 cut(s) | 478 |
| AspLEI | GCGC | 2 cut(s) | 154, 258 |
| AspS9I | GGNCC | 1 cut(s) | 438 |
| AsuHPI | GGTGA | 2 cut(s) | 460, 467 |
| AvaII | GGWCC | 1 cut(s) | 438 |
| AvrII | CCTAGG | 1 cut(s) | 478 |
| BaeGI | GKGCMC | 1 cut(s) | 75 |
| BanI | GGYRCC | 2 cut(s) | 151, 255 |
| BanII | GRGCYC | 1 cut(s) | 107 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 320, 352 |
| Bbv12I | GWGCWC | 2 cut(s) | 75, 107 |
| BbvCI | CCTCAGC | 1 cut(s) | 444 |
| BbvI | GCAGC | 1 cut(s) | 360 |
| BccI | CCATC | 2 cut(s) | 163, 171 |
| BciT130I | CCWGG | 4 cut(s) | 149, 170, 209, 436 |
| BcoDI | GTCTC | 2 cut(s) | 209, 349 |
| BfaI | CTAG | 2 cut(s) | 353, 479 |
| BfoI | RGCGCY | 2 cut(s) | 155, 259 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 515 |
| BisI | GCNGC | 7 cut(s) | 55, 282, 374, 390, 432, 501, 510 |
| BlnI | CCTAGG | 1 cut(s) | 478 |
| BlsI | GCNGC | 7 cut(s) | 56, 283, 375, 391, 433, 502, 511 |
| Bme1390I | CCNGG | 4 cut(s) | 149, 170, 209, 436 |
| Bme18I | GGWCC | 1 cut(s) | 438 |
| BmgBI | CACGTC | 1 cut(s) | 343 |
| BmgT120I | GGNCC | 1 cut(s) | 438 |
| BmiI | GGNNCC | 3 cut(s) | 134, 153, 257 |
| BmrFI | CCNGG | 4 cut(s) | 149, 170, 209, 436 |
| BmsI | GCATC | 1 cut(s) | 268 |
| BpmI | CTGGAG | 2 cut(s) | 191, 479 |
| Bpu10I | CCTNAGC | 4 cut(s) | 185, 393, 444, 486 |
| BpuEI | CTTGAG | 1 cut(s) | 121 |
| BsaHI | GRCGYC | 3 cut(s) | 152, 256, 288 |
| BsaI | GGTCTC | 1 cut(s) | 209 |
| BsaJI | CCNNGG | 4 cut(s) | 168, 208, 292, 478 |
| BsaWI | WCCGGW | 1 cut(s) | 11 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 169, 375, 435 |
| Bse1I | ACTGG | 1 cut(s) | 243 |
| BseAI | TCCGGA | 1 cut(s) | 11 |
| BseBI | CCWGG | 4 cut(s) | 149, 170, 209, 436 |
| BseDI | CCNNGG | 4 cut(s) | 168, 208, 292, 478 |
| BseGI | GGATG | 2 cut(s) | 163, 250 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 169, 375, 435 |
| BseMII | CTCAG | 1 cut(s) | 435 |
| BseNI | ACTGG | 1 cut(s) | 243 |
| BseSI | GKGCMC | 1 cut(s) | 75 |
| BseXI | GCAGC | 1 cut(s) | 360 |
| BseYI | CCCAGC | 1 cut(s) | 217 |
| Bsh1236I | CGCG | 1 cut(s) | 384 |
| BshFI | GGCC | 2 cut(s) | 57, 110 |
| BshNI | GGYRCC | 2 cut(s) | 151, 255 |
| BsiHKAI | GWGCWC | 2 cut(s) | 75, 107 |
| BsiSI | CCGG | 1 cut(s) | 12 |
| BslFI | GGGAC | 1 cut(s) | 335 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 169, 375, 435 |
| BsmAI | GTCTC | 2 cut(s) | 209, 349 |
| BsmBI | CGTCTC | 1 cut(s) | 349 |
| BsmFI | GGGAC | 1 cut(s) | 335 |
| BsnI | GGCC | 2 cut(s) | 57, 110 |
| Bso31I | GGTCTC | 1 cut(s) | 209 |
| Bsp1286I | GDGCHC | 2 cut(s) | 75, 107 |
| Bsp13I | TCCGGA | 1 cut(s) | 11 |
| Bsp143I | GATC | 3 cut(s) | 195, 379, 493 |
| BspANI | GGCC | 2 cut(s) | 57, 110 |
| BspCNI | CTCAG | 1 cut(s) | 436 |
| BspEI | TCCGGA | 1 cut(s) | 11 |
| BspFNI | CGCG | 1 cut(s) | 384 |
| BspLI | GGNNCC | 3 cut(s) | 134, 153, 257 |
| BspPI | GGATC | 2 cut(s) | 387, 501 |
| BspT107I | GGYRCC | 2 cut(s) | 151, 255 |
| BspTNI | GGTCTC | 1 cut(s) | 209 |
| BsrBI | CCGCTC | 1 cut(s) | 54 |
| BsrI | ACTGG | 1 cut(s) | 243 |
| BssECI | CCNNGG | 4 cut(s) | 168, 208, 292, 478 |
| BssMI | GATC | 3 cut(s) | 195, 379, 493 |
| BssNI | GRCGYC | 3 cut(s) | 152, 256, 288 |
| BssT1I | CCWWGG | 1 cut(s) | 478 |
| Bst2UI | CCWGG | 4 cut(s) | 149, 170, 209, 436 |
| Bst4CI | ACNGT | 3 cut(s) | 85, 275, 313 |
| Bst6I | CTCTTC | 1 cut(s) | 186 |
| BstACI | GRCGYC | 3 cut(s) | 152, 256, 288 |
| BstDEI | CTNAG | 6 cut(s) | 23, 185, 348, 393, 444, 486 |
| BstDSI | CCRYGG | 1 cut(s) | 292 |
| BstF5I | GGATG | 2 cut(s) | 163, 250 |
| BstFNI | CGCG | 1 cut(s) | 384 |
| BstH2I | RGCGCY | 2 cut(s) | 155, 259 |
| BstHHI | GCGC | 2 cut(s) | 154, 258 |
| BstKTI | GATC | 3 cut(s) | 198, 382, 496 |
| BstMAI | GTCTC | 2 cut(s) | 209, 349 |
| BstMBI | GATC | 3 cut(s) | 195, 379, 493 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 440, 506, 509, 515 |
| BstNI | CCWGG | 4 cut(s) | 149, 170, 209, 436 |
| BstSCI | CCNGG | 4 cut(s) | 147, 168, 207, 434 |
| BstSLI | GKGCMC | 1 cut(s) | 75 |
| BstUI | CGCG | 1 cut(s) | 384 |
| BstV1I | GCAGC | 1 cut(s) | 360 |
| BsuRI | GGCC | 2 cut(s) | 57, 110 |
| BtgI | CCRYGG | 1 cut(s) | 292 |
| BtrI | CACGTC | 1 cut(s) | 343 |
| BtsCI | GGATG | 2 cut(s) | 163, 250 |
| BtsI | GCAGTG | 1 cut(s) | 519 |
| BtsIMutI | CAGTG | 1 cut(s) | 519 |
| CfoI | GCGC | 2 cut(s) | 154, 258 |
| Cfr13I | GGNCC | 1 cut(s) | 438 |
| CviAII | CATG | 1 cut(s) | 137 |
| DdeI | CTNAG | 6 cut(s) | 23, 185, 348, 393, 444, 486 |
| DinI | GGCGCC | 2 cut(s) | 153, 257 |
| DpnI | GATC | 3 cut(s) | 197, 381, 495 |
| DpnII | GATC | 3 cut(s) | 195, 379, 493 |
| Eam1104I | CTCTTC | 1 cut(s) | 186 |
| EarI | CTCTTC | 1 cut(s) | 186 |
| EciI | GGCGGA | 1 cut(s) | 299 |
| Ecl136II | GAGCTC | 1 cut(s) | 105 |
| Eco130I | CCWWGG | 1 cut(s) | 478 |
| Eco24I | GRGCYC | 1 cut(s) | 107 |
| Eco31I | GGTCTC | 1 cut(s) | 209 |
| Eco47I | GGWCC | 1 cut(s) | 438 |
| Eco53kI | GAGCTC | 1 cut(s) | 105 |
| Eco57I | CTGAAG | 2 cut(s) | 80, 401 |
| EcoICRI | GAGCTC | 1 cut(s) | 105 |
| EcoRI | GAATTC | 1 cut(s) | 7 |
| EcoRII | CCWGG | 4 cut(s) | 147, 168, 207, 434 |
| EcoT14I | CCWWGG | 1 cut(s) | 478 |
| EcoT38I | GRGCYC | 1 cut(s) | 107 |
| EgeI | GGCGCC | 2 cut(s) | 153, 257 |
| EheI | GGCGCC | 2 cut(s) | 153, 257 |
| ErhI | CCWWGG | 1 cut(s) | 478 |
| Esp3I | CGTCTC | 1 cut(s) | 349 |
| FaeI | CATG | 1 cut(s) | 140 |
| FaiI | YATR | 1 cut(s) | 138 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 308, 340 |
| FaqI | GGGAC | 1 cut(s) | 335 |
| FatI | CATG | 1 cut(s) | 136 |
| FauI | CCCGC | 3 cut(s) | 20, 312, 369 |
| Fnu4HI | GCNGC | 7 cut(s) | 55, 282, 374, 390, 432, 501, 510 |
| FokI | GGATG | 2 cut(s) | 150, 257 |
| FriOI | GRGCYC | 1 cut(s) | 107 |
| Fsp4HI | GCNGC | 7 cut(s) | 55, 282, 374, 390, 432, 501, 510 |
| FspBI | CTAG | 2 cut(s) | 353, 479 |
| GlaI | GCGC | 2 cut(s) | 153, 257 |
| GluI | GCNGC | 7 cut(s) | 55, 282, 374, 390, 432, 501, 510 |
| GsaI | CCCAGC | 1 cut(s) | 221 |
| GsuI | CTGGAG | 2 cut(s) | 191, 479 |
| HaeII | RGCGCY | 2 cut(s) | 155, 259 |
| HaeIII | GGCC | 2 cut(s) | 57, 110 |
| HapII | CCGG | 1 cut(s) | 12 |
| HhaI | GCGC | 2 cut(s) | 154, 258 |
| Hin1I | GRCGYC | 3 cut(s) | 152, 256, 288 |
| Hin1II | CATG | 1 cut(s) | 140 |
| Hin6I | GCGC | 2 cut(s) | 152, 256 |
| HinP1I | GCGC | 2 cut(s) | 152, 256 |
| HincII | GTYRAC | 1 cut(s) | 88 |
| HindII | GTYRAC | 1 cut(s) | 88 |
| HinfI | GANTC | 2 cut(s) | 19, 412 |
| HpaI | GTTAAC | 1 cut(s) | 88 |
| HpaII | CCGG | 1 cut(s) | 12 |
| HphI | GGTGA | 2 cut(s) | 460, 467 |
| Hpy166II | GTNNAC | 2 cut(s) | 73, 88 |
| Hpy188I | TCNGA | 1 cut(s) | 160 |
| Hpy188III | TCNNGA | 1 cut(s) | 12 |
| Hpy8I | GTNNAC | 2 cut(s) | 73, 88 |
| HpyAV | CCTTC | 1 cut(s) | 55 |
| HpyCH4III | ACNGT | 3 cut(s) | 85, 275, 313 |
| HpyCH4IV | ACGT | 2 cut(s) | 288, 342 |
| HpyCH4V | TGCA | 2 cut(s) | 73, 305 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 440, 506, 509, 515 |
| HpyF3I | CTNAG | 6 cut(s) | 23, 185, 348, 393, 444, 486 |
| HpySE526I | ACGT | 2 cut(s) | 288, 342 |
| Hsp92I | GRCGYC | 3 cut(s) | 152, 256, 288 |
| Hsp92II | CATG | 1 cut(s) | 140 |
| HspAI | GCGC | 2 cut(s) | 152, 256 |
| KasI | GGCGCC | 2 cut(s) | 151, 255 |
| Kpn2I | TCCGGA | 1 cut(s) | 11 |
| KspAI | GTTAAC | 1 cut(s) | 88 |
| Kzo9I | GATC | 3 cut(s) | 195, 379, 493 |
| LmnI | GCTCC | 3 cut(s) | 181, 214, 482 |
| Lsp1109I | GCAGC | 1 cut(s) | 360 |
| LweI | GCATC | 1 cut(s) | 268 |
| MaeI | CTAG | 2 cut(s) | 353, 479 |
| MaeII | ACGT | 2 cut(s) | 288, 342 |
| MaeIII | GTNAC | 1 cut(s) | 307 |
| MalI | GATC | 3 cut(s) | 197, 381, 495 |
| MbiI | CCGCTC | 1 cut(s) | 54 |
| MboI | GATC | 3 cut(s) | 195, 379, 493 |
| MboII | GAAGA | 4 cut(s) | 30, 203, 407, 463 |
| MhlI | GDGCHC | 2 cut(s) | 75, 107 |
| MluCI | AATT | 3 cut(s) | 7, 140, 334 |
| Mly113I | GGCGCC | 2 cut(s) | 152, 256 |
| MlyI | GAGTC | 1 cut(s) | 28 |
| MnlI | CCTC | 3 cut(s) | 217, 439, 460 |
| MroI | TCCGGA | 1 cut(s) | 11 |
| MseI | TTAA | 3 cut(s) | 87, 315, 525 |
| MslI | CAYNNNNRTG | 1 cut(s) | 47 |
| MspA1I | CMGCKG | 2 cut(s) | 421, 443 |
| MspI | CCGG | 1 cut(s) | 12 |
| MspR9I | CCNGG | 4 cut(s) | 149, 170, 209, 436 |
| MvaI | CCWGG | 4 cut(s) | 149, 170, 209, 436 |
| MvnI | CGCG | 1 cut(s) | 384 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 440, 506, 509, 515 |
| NarI | GGCGCC | 2 cut(s) | 152, 256 |
| NdeII | GATC | 3 cut(s) | 195, 379, 493 |
| NlaIII | CATG | 1 cut(s) | 140 |
| NlaIV | GGNNCC | 3 cut(s) | 134, 153, 257 |
| NmeAIII | GCCGAG | 1 cut(s) | 86 |
| NmuCI | GTSAC | 1 cut(s) | 307 |
| OliI | CACNNNNGTG | 1 cut(s) | 47 |
| PfeI | GAWTC | 1 cut(s) | 412 |
| PflFI | GACNNNGTC | 1 cut(s) | 18 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 169 |
| PkrI | GCNGC | 7 cut(s) | 56, 283, 375, 391, 433, 502, 511 |
| PleI | GAGTC | 1 cut(s) | 27 |
| PluTI | GGCGCC | 2 cut(s) | 155, 259 |
| PpsI | GAGTC | 1 cut(s) | 27 |
| Psp124BI | GAGCTC | 1 cut(s) | 107 |
| Psp6I | CCWGG | 4 cut(s) | 147, 168, 207, 434 |
| PspFI | CCCAGC | 1 cut(s) | 217 |
| PspGI | CCWGG | 4 cut(s) | 147, 168, 207, 434 |
| PspN4I | GGNNCC | 3 cut(s) | 134, 153, 257 |
| PspPI | GGNCC | 1 cut(s) | 438 |
| PsyI | GACNNNGTC | 1 cut(s) | 18 |
| PvuII | CAGCTG | 1 cut(s) | 421 |
| RseI | CAYNNNNRTG | 1 cut(s) | 47 |
| SacI | GAGCTC | 1 cut(s) | 107 |
| SaqAI | TTAA | 3 cut(s) | 87, 315, 525 |
| SatI | GCNGC | 7 cut(s) | 55, 282, 374, 390, 432, 501, 510 |
| Sau3AI | GATC | 3 cut(s) | 195, 379, 493 |
| Sau96I | GGNCC | 1 cut(s) | 438 |
| SchI | GAGTC | 1 cut(s) | 28 |
| ScrFI | CCNGG | 4 cut(s) | 149, 170, 209, 436 |
| SduI | GDGCHC | 2 cut(s) | 75, 107 |
| SfaNI | GCATC | 1 cut(s) | 268 |
| SfoI | GGCGCC | 2 cut(s) | 153, 257 |
| SinI | GGWCC | 1 cut(s) | 438 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 47 |
| SmlI | CTYRAG | 1 cut(s) | 100 |
| SmoI | CTYRAG | 1 cut(s) | 100 |
| Sse9I | AATT | 3 cut(s) | 7, 140, 334 |
| SspDI | GGCGCC | 2 cut(s) | 151, 255 |
| SspMI | CTAG | 2 cut(s) | 353, 479 |
| SstI | GAGCTC | 1 cut(s) | 107 |
| StyD4I | CCNGG | 4 cut(s) | 147, 168, 207, 434 |
| StyI | CCWWGG | 1 cut(s) | 478 |
| TaaI | ACNGT | 3 cut(s) | 85, 275, 313 |
| TaiI | ACGT | 2 cut(s) | 291, 345 |
| TasI | AATT | 3 cut(s) | 7, 140, 334 |
| TauI | GCSGC | 6 cut(s) | 57, 284, 392, 434, 503, 512 |
| TfiI | GAWTC | 1 cut(s) | 412 |
| Tru1I | TTAA | 3 cut(s) | 87, 315, 525 |
| Tru9I | TTAA | 3 cut(s) | 87, 315, 525 |
| TscAI | CASTG | 1 cut(s) | 519 |
| TseFI | GTSAC | 1 cut(s) | 307 |
| TseI | GCWGC | 1 cut(s) | 373 |
| Tsp45I | GTSAC | 1 cut(s) | 307 |
| TspDTI | ATGAA | 1 cut(s) | 153 |
| TspGWI | ACGGA | 2 cut(s) | 31, 281 |
| TspRI | CASTG | 1 cut(s) | 519 |
| Tth111I | GACNNNGTC | 1 cut(s) | 18 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 169 |
| VneI | GTGCAC | 1 cut(s) | 71 |
| VpaK11BI | GGWCC | 1 cut(s) | 438 |
| XapI | RAATTY | 1 cut(s) | 7 |
| XmaJI | CCTAGG | 1 cut(s) | 478 |
| XspI | CTAG | 2 cut(s) | 353, 479 |
| ZraI | GACGTC | 1 cut(s) | 289 |