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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 212, 248, 353 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 258 |
| AccII | CGCG | 3 cut(s) | 71, 135, 405 |
| AccIII | TCCGGA | 1 cut(s) | 387 |
| AclWI | GGATC | 1 cut(s) | 43 |
| AcoI | YGGCCR | 1 cut(s) | 24 |
| AcuI | CTGAAG | 1 cut(s) | 38 |
| AcyI | GRCGYC | 2 cut(s) | 249, 269 |
| AfaI | GTAC | 1 cut(s) | 319 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 58, 139, 258, 342, 343, 423, 437, 458, 459 |
| AgsI | TTSAA | 1 cut(s) | 350 |
| AjnI | CCWGG | 1 cut(s) | 337 |
| AluBI | AGCT | 3 cut(s) | 149, 200, 302 |
| AluI | AGCT | 3 cut(s) | 149, 200, 302 |
| AlwI | GGATC | 1 cut(s) | 43 |
| Ama87I | CYCGRG | 2 cut(s) | 361, 458 |
| Aor13HI | TCCGGA | 1 cut(s) | 387 |
| AoxI | GGCC | 4 cut(s) | 24, 78, 207, 449 |
| ApeKI | GCWGC | 5 cut(s) | 10, 137, 143, 146, 235 |
| AspLEI | GCGC | 3 cut(s) | 137, 190, 251 |
| AspS9I | GGNCC | 1 cut(s) | 450 |
| AsuC2I | CCSGG | 3 cut(s) | 20, 459, 460 |
| AsuHPI | GGTGA | 1 cut(s) | 113 |
| AvaI | CYCGRG | 2 cut(s) | 361, 458 |
| BaeGI | GKGCMC | 1 cut(s) | 217 |
| BanI | GGYRCC | 3 cut(s) | 212, 248, 353 |
| BbvCI | CCTCAGC | 1 cut(s) | 123 |
| BbvI | GCAGC | 4 cut(s) | 124, 130, 158, 222 |
| BccI | CCATC | 2 cut(s) | 260, 460 |
| BceAI | ACGGC | 1 cut(s) | 107 |
| BciT130I | CCWGG | 1 cut(s) | 339 |
| BcnI | CCSGG | 3 cut(s) | 20, 459, 460 |
| BfaI | CTAG | 2 cut(s) | 201, 218 |
| BfmI | CTRYAG | 1 cut(s) | 144 |
| BfoI | RGCGCY | 2 cut(s) | 191, 252 |
| BisI | GCNGC | 9 cut(s) | 11, 27, 69, 133, 138, 141, 144, 147, 236 |
| BlsI | GCNGC | 9 cut(s) | 12, 28, 70, 134, 139, 142, 145, 148, 237 |
| BmcAI | AGTACT | 1 cut(s) | 319 |
| Bme1390I | CCNGG | 4 cut(s) | 20, 339, 459, 460 |
| BmeT110I | CYCGRG | 2 cut(s) | 361, 458 |
| BmgT120I | GGNCC | 1 cut(s) | 450 |
| BmiI | GGNNCC | 3 cut(s) | 214, 250, 355 |
| BmrFI | CCNGG | 4 cut(s) | 20, 339, 459, 460 |
| BmrI | ACTGGG | 2 cut(s) | 268, 411 |
| BmsI | GCATC | 1 cut(s) | 264 |
| BmuI | ACTGGG | 2 cut(s) | 268, 411 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 382, 414 |
| BpmI | CTGGAG | 2 cut(s) | 116, 137 |
| Bpu10I | CCTNAGC | 1 cut(s) | 123 |
| BpuMI | CCSGG | 3 cut(s) | 20, 459, 460 |
| BsaBI | GATNNNNATC | 1 cut(s) | 278 |
| BsaHI | GRCGYC | 2 cut(s) | 249, 269 |
| BsaJI | CCNNGG | 5 cut(s) | 81, 337, 403, 422, 458 |
| BsaWI | WCCGGW | 1 cut(s) | 387 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 58, 139, 258, 342, 343, 423, 437, 458, 459 |
| Bse118I | RCCGGY | 1 cut(s) | 209 |
| Bse1I | ACTGG | 2 cut(s) | 263, 417 |
| Bse8I | GATNNNNATC | 1 cut(s) | 278 |
| BseAI | TCCGGA | 1 cut(s) | 387 |
| BseBI | CCWGG | 1 cut(s) | 339 |
| BseDI | CCNNGG | 5 cut(s) | 81, 337, 403, 422, 458 |
| BseGI | GGATG | 1 cut(s) | 471 |
| BseJI | GATNNNNATC | 1 cut(s) | 278 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 58, 139, 258, 342, 343, 423, 437, 458, 459 |
| BseMII | CTCAG | 1 cut(s) | 114 |
| BseNI | ACTGG | 2 cut(s) | 263, 417 |
| BseSI | GKGCMC | 1 cut(s) | 217 |
| BseXI | GCAGC | 4 cut(s) | 124, 130, 158, 222 |
| BseYI | CCCAGC | 1 cut(s) | 436 |
| Bsh1236I | CGCG | 3 cut(s) | 71, 135, 405 |
| Bsh1285I | CGRYCG | 1 cut(s) | 282 |
| BshFI | GGCC | 4 cut(s) | 26, 80, 209, 451 |
| BshNI | GGYRCC | 3 cut(s) | 212, 248, 353 |
| BsiEI | CGRYCG | 1 cut(s) | 282 |
| BsiHKCI | CYCGRG | 2 cut(s) | 361, 458 |
| BsiSI | CCGG | 4 cut(s) | 19, 210, 388, 459 |
| BslFI | GGGAC | 1 cut(s) | 414 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 58, 139, 258, 342, 343, 423, 437, 458, 459 |
| BsmFI | GGGAC | 1 cut(s) | 414 |
| BsnI | GGCC | 4 cut(s) | 26, 80, 209, 451 |
| BsoBI | CYCGRG | 2 cut(s) | 361, 458 |
| Bsp1286I | GDGCHC | 1 cut(s) | 217 |
| Bsp13I | TCCGGA | 1 cut(s) | 387 |
| Bsp143I | GATC | 2 cut(s) | 48, 279 |
| BspANI | GGCC | 4 cut(s) | 26, 80, 209, 451 |
| BspCNI | CTCAG | 1 cut(s) | 115 |
| BspEI | TCCGGA | 1 cut(s) | 387 |
| BspFNI | CGCG | 3 cut(s) | 71, 135, 405 |
| BspLI | GGNNCC | 3 cut(s) | 214, 250, 355 |
| BspMAI | CTGCAG | 1 cut(s) | 148 |
| BspPI | GGATC | 1 cut(s) | 43 |
| BspT107I | GGYRCC | 3 cut(s) | 212, 248, 353 |
| BsrFI | RCCGGY | 1 cut(s) | 209 |
| BsrI | ACTGG | 2 cut(s) | 263, 417 |
| BssAI | RCCGGY | 1 cut(s) | 209 |
| BssECI | CCNNGG | 5 cut(s) | 81, 337, 403, 422, 458 |
| BssMI | GATC | 2 cut(s) | 48, 279 |
| BssNI | GRCGYC | 2 cut(s) | 249, 269 |
| Bst2UI | CCWGG | 1 cut(s) | 339 |
| BstACI | GRCGYC | 2 cut(s) | 249, 269 |
| BstC8I | GCNNGC | 2 cut(s) | 78, 358 |
| BstDEI | CTNAG | 1 cut(s) | 123 |
| BstDSI | CCRYGG | 1 cut(s) | 403 |
| BstF5I | GGATG | 1 cut(s) | 471 |
| BstFNI | CGCG | 3 cut(s) | 71, 135, 405 |
| BstH2I | RGCGCY | 2 cut(s) | 191, 252 |
| BstHHI | GCGC | 3 cut(s) | 137, 190, 251 |
| BstKTI | GATC | 2 cut(s) | 51, 282 |
| BstMBI | GATC | 2 cut(s) | 48, 279 |
| BstMCI | CGRYCG | 1 cut(s) | 282 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 77, 143, 146, 206, 283, 299 |
| BstNI | CCWGG | 1 cut(s) | 339 |
| BstNSI | RCATGY | 1 cut(s) | 166 |
| BstSCI | CCNGG | 4 cut(s) | 18, 337, 457, 458 |
| BstSFI | CTRYAG | 1 cut(s) | 144 |
| BstSLI | GKGCMC | 1 cut(s) | 217 |
| BstUI | CGCG | 3 cut(s) | 71, 135, 405 |
| BstV1I | GCAGC | 4 cut(s) | 124, 130, 158, 222 |
| BstX2I | RGATCY | 1 cut(s) | 48 |
| BstYI | RGATCY | 1 cut(s) | 48 |
| BsuRI | GGCC | 4 cut(s) | 26, 80, 209, 451 |
| BtgI | CCRYGG | 1 cut(s) | 403 |
| BtsCI | GGATG | 1 cut(s) | 471 |
| Cac8I | GCNNGC | 2 cut(s) | 78, 358 |
| CfoI | GCGC | 3 cut(s) | 137, 190, 251 |
| Cfr10I | RCCGGY | 1 cut(s) | 209 |
| Cfr13I | GGNCC | 1 cut(s) | 450 |
| Cfr42I | CCGCGG | 1 cut(s) | 406 |
| Cfr9I | CCCGGG | 1 cut(s) | 458 |
| CseI | GACGC | 1 cut(s) | 258 |
| Csp6I | GTAC | 1 cut(s) | 318 |
| CviAII | CATG | 2 cut(s) | 163, 444 |
| CviQI | GTAC | 1 cut(s) | 318 |
| DdeI | CTNAG | 1 cut(s) | 123 |
| DinI | GGCGCC | 1 cut(s) | 250 |
| DpnI | GATC | 2 cut(s) | 50, 281 |
| DpnII | GATC | 2 cut(s) | 48, 279 |
| EaeI | YGGCCR | 1 cut(s) | 24 |
| EciI | GGCGGA | 2 cut(s) | 294, 396 |
| Eco57I | CTGAAG | 1 cut(s) | 38 |
| Eco88I | CYCGRG | 2 cut(s) | 361, 458 |
| EcoRII | CCWGG | 1 cut(s) | 337 |
| EgeI | GGCGCC | 1 cut(s) | 250 |
| EheI | GGCGCC | 1 cut(s) | 250 |
| FaeI | CATG | 2 cut(s) | 166, 447 |
| FaiI | YATR | 4 cut(s) | 160, 164, 180, 445 |
| FaqI | GGGAC | 1 cut(s) | 414 |
| FatI | CATG | 2 cut(s) | 162, 443 |
| FauI | CCCGC | 1 cut(s) | 51 |
| Fnu4HI | GCNGC | 9 cut(s) | 11, 27, 69, 133, 138, 141, 144, 147, 236 |
| Fsp4HI | GCNGC | 9 cut(s) | 11, 27, 69, 133, 138, 141, 144, 147, 236 |
| FspBI | CTAG | 2 cut(s) | 201, 218 |
| GlaI | GCGC | 3 cut(s) | 136, 189, 250 |
| GluI | GCNGC | 9 cut(s) | 11, 27, 69, 133, 138, 141, 144, 147, 236 |
| GsaI | CCCAGC | 1 cut(s) | 440 |
| GsuI | CTGGAG | 2 cut(s) | 116, 137 |
| HaeII | RGCGCY | 2 cut(s) | 191, 252 |
| HaeIII | GGCC | 4 cut(s) | 26, 80, 209, 451 |
| HapII | CCGG | 4 cut(s) | 19, 210, 388, 459 |
| HgaI | GACGC | 1 cut(s) | 258 |
| HhaI | GCGC | 3 cut(s) | 137, 190, 251 |
| Hin1I | GRCGYC | 2 cut(s) | 249, 269 |
| Hin1II | CATG | 2 cut(s) | 166, 447 |
| Hin6I | GCGC | 3 cut(s) | 135, 188, 249 |
| HinP1I | GCGC | 3 cut(s) | 135, 188, 249 |
| HinfI | GANTC | 5 cut(s) | 62, 155, 384, 397, 408 |
| HpaII | CCGG | 4 cut(s) | 19, 210, 388, 459 |
| HphI | GGTGA | 1 cut(s) | 113 |
| Hpy188I | TCNGA | 1 cut(s) | 423 |
| Hpy188III | TCNNGA | 1 cut(s) | 388 |
| Hpy99I | CGWCG | 1 cut(s) | 274 |
| HpyAV | CCTTC | 8 cut(s) | 34, 62, 178, 199, 238, 259, 289, 344 |
| HpyCH4IV | ACGT | 1 cut(s) | 225 |
| HpyCH4V | TGCA | 4 cut(s) | 13, 146, 166, 238 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 77, 143, 146, 206, 283, 299 |
| HpyF3I | CTNAG | 1 cut(s) | 123 |
| HpySE526I | ACGT | 1 cut(s) | 225 |
| Hsp92I | GRCGYC | 2 cut(s) | 249, 269 |
| Hsp92II | CATG | 2 cut(s) | 166, 447 |
| HspAI | GCGC | 3 cut(s) | 135, 188, 249 |
| KasI | GGCGCC | 1 cut(s) | 248 |
| Kpn2I | TCCGGA | 1 cut(s) | 387 |
| KspI | CCGCGG | 1 cut(s) | 406 |
| Kzo9I | GATC | 2 cut(s) | 48, 279 |
| LmnI | GCTCC | 1 cut(s) | 307 |
| Lsp1109I | GCAGC | 4 cut(s) | 124, 130, 158, 222 |
| LweI | GCATC | 1 cut(s) | 264 |
| MaeI | CTAG | 2 cut(s) | 201, 218 |
| MaeII | ACGT | 1 cut(s) | 225 |
| MalI | GATC | 2 cut(s) | 50, 281 |
| MboI | GATC | 2 cut(s) | 48, 279 |
| MflI | RGATCY | 1 cut(s) | 48 |
| MhlI | GDGCHC | 1 cut(s) | 217 |
| Mly113I | GGCGCC | 1 cut(s) | 249 |
| MlyI | GAGTC | 4 cut(s) | 71, 164, 391, 402 |
| MnlI | CCTC | 8 cut(s) | 66, 76, 91, 112, 118, 384, 417, 441 |
| MroI | TCCGGA | 1 cut(s) | 387 |
| MseI | TTAA | 1 cut(s) | 87 |
| MspA1I | CMGCKG | 3 cut(s) | 58, 149, 405 |
| MspI | CCGG | 4 cut(s) | 19, 210, 388, 459 |
| MspR9I | CCNGG | 4 cut(s) | 20, 339, 459, 460 |
| MvaI | CCWGG | 1 cut(s) | 339 |
| MvnI | CGCG | 3 cut(s) | 71, 135, 405 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 77, 143, 146, 206, 283, 299 |
| NarI | GGCGCC | 1 cut(s) | 249 |
| NciI | CCSGG | 3 cut(s) | 20, 459, 460 |
| NdeII | GATC | 2 cut(s) | 48, 279 |
| NlaIII | CATG | 2 cut(s) | 166, 447 |
| NlaIV | GGNNCC | 3 cut(s) | 214, 250, 355 |
| NmeAIII | GCCGAG | 2 cut(s) | 91, 106 |
| NspI | RCATGY | 1 cut(s) | 166 |
| PfeI | GAWTC | 1 cut(s) | 384 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 258 |
| PkrI | GCNGC | 9 cut(s) | 12, 28, 70, 134, 139, 142, 145, 148, 237 |
| Ple19I | CGATCG | 1 cut(s) | 282 |
| PleI | GAGTC | 4 cut(s) | 70, 163, 391, 402 |
| PluTI | GGCGCC | 1 cut(s) | 252 |
| PpsI | GAGTC | 4 cut(s) | 70, 163, 391, 402 |
| Psp6I | CCWGG | 1 cut(s) | 337 |
| PspFI | CCCAGC | 1 cut(s) | 436 |
| PspGI | CCWGG | 1 cut(s) | 337 |
| PspN4I | GGNNCC | 3 cut(s) | 214, 250, 355 |
| PspPI | GGNCC | 1 cut(s) | 450 |
| PstI | CTGCAG | 1 cut(s) | 148 |
| PsuI | RGATCY | 1 cut(s) | 48 |
| PvuI | CGATCG | 1 cut(s) | 282 |
| PvuII | CAGCTG | 1 cut(s) | 149 |
| RsaI | GTAC | 1 cut(s) | 319 |
| RsaNI | GTAC | 1 cut(s) | 318 |
| SacII | CCGCGG | 1 cut(s) | 406 |
| SaqAI | TTAA | 1 cut(s) | 87 |
| SatI | GCNGC | 9 cut(s) | 11, 27, 69, 133, 138, 141, 144, 147, 236 |
| Sau3AI | GATC | 2 cut(s) | 48, 279 |
| Sau96I | GGNCC | 1 cut(s) | 450 |
| ScaI | AGTACT | 1 cut(s) | 319 |
| SchI | GAGTC | 4 cut(s) | 71, 164, 391, 402 |
| ScrFI | CCNGG | 4 cut(s) | 20, 339, 459, 460 |
| SduI | GDGCHC | 1 cut(s) | 217 |
| SetI | ASST | 8 cut(s) | 45, 87, 151, 202, 228, 304, 355, 428 |
| SfaNI | GCATC | 1 cut(s) | 264 |
| SfcI | CTRYAG | 1 cut(s) | 144 |
| SfoI | GGCGCC | 1 cut(s) | 250 |
| Sfr303I | CCGCGG | 1 cut(s) | 406 |
| SgrBI | CCGCGG | 1 cut(s) | 406 |
| SmaI | CCCGGG | 1 cut(s) | 460 |
| SspDI | GGCGCC | 1 cut(s) | 248 |
| SspMI | CTAG | 2 cut(s) | 201, 218 |
| StyD4I | CCNGG | 4 cut(s) | 18, 337, 457, 458 |
| TaiI | ACGT | 1 cut(s) | 228 |
| TaqI | TCGA | 2 cut(s) | 255, 272 |
| TatI | WGTACW | 1 cut(s) | 317 |
| TauI | GCSGC | 4 cut(s) | 29, 71, 135, 143 |
| TfiI | GAWTC | 1 cut(s) | 384 |
| Tru1I | TTAA | 1 cut(s) | 87 |
| Tru9I | TTAA | 1 cut(s) | 87 |
| TseI | GCWGC | 5 cut(s) | 10, 137, 143, 146, 235 |
| TspDTI | ATGAA | 1 cut(s) | 432 |
| TspMI | CCCGGG | 1 cut(s) | 458 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 258 |
| XceI | RCATGY | 1 cut(s) | 166 |
| XmaI | CCCGGG | 1 cut(s) | 458 |
| XspI | CTAG | 2 cut(s) | 201, 218 |
| ZrmI | AGTACT | 1 cut(s) | 319 |