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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 688, 1363 |
| Acc36I | ACCTGC | 2 cut(s) | 246, 559 |
| AccB1I | GGYRCC | 2 cut(s) | 1229, 1442 |
| AccBSI | CCGCTC | 7 cut(s) | 116, 544, 790, 817, 1000, 1273, 1307 |
| AccI | GTMKAC | 2 cut(s) | 128, 234 |
| AccII | CGCG | 5 cut(s) | 139, 141, 156, 288, 850 |
| AclWI | GGATC | 3 cut(s) | 173, 318, 513 |
| AcoI | YGGCCR | 5 cut(s) | 495, 525, 737, 1059, 1122 |
| AcsI | RAATTY | 1 cut(s) | 328 |
| AcuI | CTGAAG | 2 cut(s) | 862, 1088 |
| AcvI | CACGTG | 1 cut(s) | 1406 |
| AcyI | GRCGYC | 2 cut(s) | 932, 1250 |
| AfaI | GTAC | 2 cut(s) | 50, 347 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 12, 412, 648, 1053, 1316, 1361, 1396 |
| AflIII | ACRYGT | 1 cut(s) | 958 |
| AgsI | TTSAA | 4 cut(s) | 260, 1136, 1144, 1219 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1458 |
| AjiI | CACGTC | 2 cut(s) | 961, 1264 |
| AleI | CACNNNNGTG | 1 cut(s) | 453 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 779, 811 |
| AluBI | AGCT | 6 cut(s) | 762, 882, 1024, 1103, 1313, 1510 |
| AluI | AGCT | 6 cut(s) | 762, 882, 1024, 1103, 1313, 1510 |
| Alw21I | GWGCWC | 2 cut(s) | 1115, 1324 |
| Alw26I | GTCTC | 6 cut(s) | 383, 450, 696, 967, 1286, 1445 |
| AlwI | GGATC | 3 cut(s) | 173, 318, 513 |
| Ama87I | CYCGRG | 4 cut(s) | 1197, 1327, 1431, 1470 |
| ApaI | GGGCCC | 1 cut(s) | 1198 |
| ApeKI | GCWGC | 9 cut(s) | 521, 940, 988, 991, 1036, 1127, 1332, 1535, 1571 |
| ApoI | RAATTY | 1 cut(s) | 328 |
| AspLEI | GCGC | 3 cut(s) | 141, 664, 852 |
| AsuHPI | GGTGA | 5 cut(s) | 391, 436, 440, 467, 1094 |
| AvaI | CYCGRG | 4 cut(s) | 1197, 1327, 1431, 1470 |
| AvaII | GGWCC | 5 cut(s) | 18, 486, 566, 731, 1365 |
| BaeGI | GKGCMC | 2 cut(s) | 1198, 1305 |
| BanI | GGYRCC | 2 cut(s) | 1229, 1442 |
| BanII | GRGCYC | 1 cut(s) | 1198 |
| BbrPI | CACGTG | 1 cut(s) | 1406 |
| BbsI | GAAGAC | 1 cut(s) | 1172 |
| Bbv12I | GWGCWC | 2 cut(s) | 1115, 1324 |
| BbvCI | CCTCAGC | 2 cut(s) | 1104, 1604 |
| BbvI | GCAGC | 9 cut(s) | 508, 952, 975, 978, 1048, 1114, 1344, 1522, 1558 |
| BccI | CCATC | 5 cut(s) | 301, 421, 455, 813, 1051 |
| BceAI | ACGGC | 4 cut(s) | 61, 510, 873, 1456 |
| BciVI | GTATCC | 1 cut(s) | 540 |
| BcoDI | GTCTC | 6 cut(s) | 383, 450, 696, 967, 1286, 1445 |
| BfaI | CTAG | 2 cut(s) | 57, 665 |
| BfmI | CTRYAG | 3 cut(s) | 33, 992, 1314 |
| BfoI | RGCGCY | 1 cut(s) | 665 |
| BfuAI | ACCTGC | 2 cut(s) | 246, 559 |
| BfuI | GTATCC | 1 cut(s) | 540 |
| Bme18I | GGWCC | 5 cut(s) | 18, 486, 566, 731, 1365 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1458 |
| BmeT110I | CYCGRG | 4 cut(s) | 1197, 1327, 1431, 1470 |
| BmgBI | CACGTC | 2 cut(s) | 961, 1264 |
| BmrI | ACTGGG | 1 cut(s) | 1452 |
| BmsI | GCATC | 1 cut(s) | 423 |
| BmuI | ACTGGG | 1 cut(s) | 1452 |
| BpiI | GAAGAC | 1 cut(s) | 1172 |
| BpmI | CTGGAG | 2 cut(s) | 1293, 1439 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1104, 1604 |
| BsaAI | YACGTR | 1 cut(s) | 1406 |
| BsaHI | GRCGYC | 2 cut(s) | 932, 1250 |
| BsaI | GGTCTC | 1 cut(s) | 1445 |
| BsaJI | CCNNGG | 9 cut(s) | 351, 411, 451, 734, 944, 1197, 1245, 1431, 1471 |
| BsaWI | WCCGGW | 1 cut(s) | 418 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 329, 359, 702, 732, 779, 809 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 12, 412, 648, 1053, 1316, 1361, 1396 |
| Bse118I | RCCGGY | 3 cut(s) | 497, 586, 1409 |
| Bse1I | ACTGG | 6 cut(s) | 220, 406, 442, 623, 1458, 1640 |
| BseDI | CCNNGG | 9 cut(s) | 351, 411, 451, 734, 944, 1197, 1245, 1431, 1471 |
| BseGI | GGATG | 2 cut(s) | 1062, 1351 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 12, 412, 648, 1053, 1316, 1361, 1396 |
| BseMII | CTCAG | 7 cut(s) | 87, 548, 569, 584, 1088, 1095, 1595 |
| BseNI | ACTGG | 6 cut(s) | 220, 406, 442, 623, 1458, 1640 |
| BseRI | GAGGAG | 1 cut(s) | 728 |
| BseSI | GKGCMC | 2 cut(s) | 1198, 1305 |
| BseX3I | CGGCCG | 4 cut(s) | 495, 525, 737, 1122 |
| BseXI | GCAGC | 9 cut(s) | 508, 952, 975, 978, 1048, 1114, 1344, 1522, 1558 |
| BseYI | CCCAGC | 7 cut(s) | 366, 647, 820, 1075, 1368, 1380, 1510 |
| BsgI | GTGCAG | 2 cut(s) | 497, 1055 |
| Bsh1236I | CGCG | 5 cut(s) | 139, 141, 156, 288, 850 |
| Bsh1285I | CGRYCG | 4 cut(s) | 498, 528, 740, 1125 |
| BshNI | GGYRCC | 2 cut(s) | 1229, 1442 |
| BsiEI | CGRYCG | 4 cut(s) | 498, 528, 740, 1125 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1115, 1324 |
| BsiHKCI | CYCGRG | 4 cut(s) | 1197, 1327, 1431, 1470 |
| BslFI | GGGAC | 6 cut(s) | 31, 132, 499, 717, 1268, 1351 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 12, 412, 648, 1053, 1316, 1361, 1396 |
| BsmAI | GTCTC | 6 cut(s) | 383, 450, 696, 967, 1286, 1445 |
| BsmBI | CGTCTC | 2 cut(s) | 383, 967 |
| BsmFI | GGGAC | 6 cut(s) | 31, 132, 499, 717, 1268, 1351 |
| BsmI | GAATGC | 1 cut(s) | 1139 |
| Bso31I | GGTCTC | 1 cut(s) | 1445 |
| BsoBI | CYCGRG | 4 cut(s) | 1197, 1327, 1431, 1470 |
| Bsp120I | GGGCCC | 1 cut(s) | 1194 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1115, 1198, 1305, 1324 |
| Bsp143I | GATC | 4 cut(s) | 165, 310, 505, 981 |
| Bsp68I | TCGCGA | 1 cut(s) | 288 |
| BspCNI | CTCAG | 7 cut(s) | 88, 547, 568, 583, 1089, 1096, 1596 |
| BspFNI | CGCG | 5 cut(s) | 139, 141, 156, 288, 850 |
| BspHI | TCATGA | 1 cut(s) | 1504 |
| BspMAI | CTGCAG | 1 cut(s) | 996 |
| BspMI | ACCTGC | 2 cut(s) | 246, 559 |
| BspPI | GGATC | 3 cut(s) | 173, 318, 513 |
| BspT107I | GGYRCC | 2 cut(s) | 1229, 1442 |
| BspTNI | GGTCTC | 1 cut(s) | 1445 |
| BsrBI | CCGCTC | 7 cut(s) | 116, 544, 790, 817, 1000, 1273, 1307 |
| BsrFI | RCCGGY | 3 cut(s) | 497, 586, 1409 |
| BsrI | ACTGG | 6 cut(s) | 220, 406, 442, 623, 1458, 1640 |
| BssAI | RCCGGY | 3 cut(s) | 497, 586, 1409 |
| BssECI | CCNNGG | 9 cut(s) | 351, 411, 451, 734, 944, 1197, 1245, 1431, 1471 |
| BssMI | GATC | 4 cut(s) | 165, 310, 505, 981 |
| BssNAI | GTATAC | 1 cut(s) | 129 |
| BssNI | GRCGYC | 2 cut(s) | 932, 1250 |
| BssT1I | CCWWGG | 2 cut(s) | 451, 1245 |
| Bst1107I | GTATAC | 1 cut(s) | 129 |
| Bst4CI | ACNGT | 4 cut(s) | 41, 376, 685, 1117 |
| Bst6I | CTCTTC | 3 cut(s) | 141, 699, 806 |
| BstACI | GRCGYC | 2 cut(s) | 932, 1250 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 774 |
| BstBAI | YACGTR | 1 cut(s) | 1406 |
| BstDEI | CTNAG | 7 cut(s) | 96, 534, 555, 570, 1097, 1104, 1604 |
| BstEII | GGTNACC | 1 cut(s) | 1087 |
| BstF5I | GGATG | 2 cut(s) | 1062, 1351 |
| BstFNI | CGCG | 5 cut(s) | 139, 141, 156, 288, 850 |
| BstH2I | RGCGCY | 1 cut(s) | 665 |
| BstHHI | GCGC | 3 cut(s) | 141, 664, 852 |
| BstKTI | GATC | 4 cut(s) | 168, 313, 508, 984 |
| BstMAI | GTCTC | 6 cut(s) | 383, 450, 696, 967, 1286, 1445 |
| BstMBI | GATC | 4 cut(s) | 165, 310, 505, 981 |
| BstMCI | CGRYCG | 4 cut(s) | 498, 528, 740, 1125 |
| BstPI | GGTNACC | 1 cut(s) | 1087 |
| BstSFI | CTRYAG | 3 cut(s) | 33, 992, 1314 |
| BstSLI | GKGCMC | 2 cut(s) | 1198, 1305 |
| BstUI | CGCG | 5 cut(s) | 139, 141, 156, 288, 850 |
| BstV1I | GCAGC | 9 cut(s) | 508, 952, 975, 978, 1048, 1114, 1344, 1522, 1558 |
| BstV2I | GAAGAC | 1 cut(s) | 1172 |
| BstZ17I | GTATAC | 1 cut(s) | 129 |
| BstZI | CGGCCG | 4 cut(s) | 495, 525, 737, 1122 |
| BsuI | GTATCC | 1 cut(s) | 540 |
| BtgZI | GCGATG | 2 cut(s) | 320, 446 |
| BtrI | CACGTC | 2 cut(s) | 961, 1264 |
| BtsCI | GGATG | 2 cut(s) | 1062, 1351 |
| BtuMI | TCGCGA | 1 cut(s) | 288 |
| BveI | ACCTGC | 2 cut(s) | 246, 559 |
| CciI | TCATGA | 1 cut(s) | 1504 |
| CciNI | GCGGCCGC | 1 cut(s) | 1122 |
| CfoI | GCGC | 3 cut(s) | 141, 664, 852 |
| Cfr10I | RCCGGY | 3 cut(s) | 497, 586, 1409 |
| Cfr9I | CCCGGG | 2 cut(s) | 1197, 1431 |
| CseI | GACGC | 5 cut(s) | 145, 299, 921, 1177, 1239 |
| Csp6I | GTAC | 2 cut(s) | 49, 346 |
| CviAII | CATG | 2 cut(s) | 343, 1505 |
| CviQI | GTAC | 2 cut(s) | 49, 346 |
| DdeI | CTNAG | 7 cut(s) | 96, 534, 555, 570, 1097, 1104, 1604 |
| DpnI | GATC | 4 cut(s) | 167, 312, 507, 983 |
| DpnII | GATC | 4 cut(s) | 165, 310, 505, 981 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 688, 1363 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1458 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 688, 1363 |
| EaeI | YGGCCR | 5 cut(s) | 495, 525, 737, 1059, 1122 |
| EagI | CGGCCG | 4 cut(s) | 495, 525, 737, 1122 |
| Eam1104I | CTCTTC | 3 cut(s) | 141, 699, 806 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1458 |
| EarI | CTCTTC | 3 cut(s) | 141, 699, 806 |
| EciI | GGCGGA | 7 cut(s) | 194, 196, 255, 332, 1036, 1169, 1304 |
| EclXI | CGGCCG | 4 cut(s) | 495, 525, 737, 1122 |
| Eco130I | CCWWGG | 2 cut(s) | 451, 1245 |
| Eco24I | GRGCYC | 1 cut(s) | 1198 |
| Eco31I | GGTCTC | 1 cut(s) | 1445 |
| Eco47I | GGWCC | 5 cut(s) | 18, 486, 566, 731, 1365 |
| Eco52I | CGGCCG | 4 cut(s) | 495, 525, 737, 1122 |
| Eco57I | CTGAAG | 2 cut(s) | 862, 1088 |
| Eco72I | CACGTG | 1 cut(s) | 1406 |
| Eco88I | CYCGRG | 4 cut(s) | 1197, 1327, 1431, 1470 |
| Eco91I | GGTNACC | 1 cut(s) | 1087 |
| EcoO109I | RGGNCCY | 4 cut(s) | 18, 486, 1194, 1365 |
| EcoO65I | GGTNACC | 1 cut(s) | 1087 |
| EcoT14I | CCWWGG | 2 cut(s) | 451, 1245 |
| EcoT38I | GRGCYC | 1 cut(s) | 1198 |
| ErhI | CCWWGG | 2 cut(s) | 451, 1245 |
| Esp3I | CGTCTC | 2 cut(s) | 383, 967 |
| FaeI | CATG | 2 cut(s) | 346, 1508 |
| FaiI | YATR | 9 cut(s) | 129, 344, 845, 920, 1031, 1208, 1214, 1448, 1506 |
| FaqI | GGGAC | 6 cut(s) | 31, 132, 499, 717, 1268, 1351 |
| FatI | CATG | 2 cut(s) | 342, 1504 |
| FblI | GTMKAC | 2 cut(s) | 128, 234 |
| FokI | GGATG | 2 cut(s) | 1069, 1338 |
| FriOI | GRGCYC | 1 cut(s) | 1198 |
| FspBI | CTAG | 2 cut(s) | 57, 665 |
| GlaI | GCGC | 3 cut(s) | 140, 663, 851 |
| GsaI | CCCAGC | 7 cut(s) | 370, 651, 824, 1079, 1372, 1384, 1514 |
| GsuI | CTGGAG | 2 cut(s) | 1293, 1439 |
| HaeII | RGCGCY | 1 cut(s) | 665 |
| HgaI | GACGC | 5 cut(s) | 145, 299, 921, 1177, 1239 |
| HhaI | GCGC | 3 cut(s) | 141, 664, 852 |
| Hin1I | GRCGYC | 2 cut(s) | 932, 1250 |
| Hin1II | CATG | 2 cut(s) | 346, 1508 |
| Hin6I | GCGC | 3 cut(s) | 139, 662, 850 |
| HinP1I | GCGC | 3 cut(s) | 139, 662, 850 |
| HincII | GTYRAC | 1 cut(s) | 235 |
| HindII | GTYRAC | 1 cut(s) | 235 |
| HinfI | GANTC | 3 cut(s) | 689, 1043, 1477 |
| HphI | GGTGA | 5 cut(s) | 391, 436, 440, 467, 1094 |
| Hpy166II | GTNNAC | 3 cut(s) | 129, 235, 382 |
| Hpy188I | TCNGA | 9 cut(s) | 170, 412, 510, 537, 558, 573, 1356, 1396, 1464 |
| Hpy188III | TCNNGA | 5 cut(s) | 287, 695, 1418, 1505, 1628 |
| Hpy8I | GTNNAC | 3 cut(s) | 129, 235, 382 |
| Hpy99I | CGWCG | 7 cut(s) | 293, 637, 701, 859, 1360, 1396, 1442 |
| HpyCH4III | ACNGT | 4 cut(s) | 41, 376, 685, 1117 |
| HpyCH4IV | ACGT | 4 cut(s) | 392, 960, 1263, 1405 |
| HpyCH4V | TGCA | 4 cut(s) | 478, 768, 994, 1036 |
| HpyF3I | CTNAG | 7 cut(s) | 96, 534, 555, 570, 1097, 1104, 1604 |
| HpySE526I | ACGT | 4 cut(s) | 392, 960, 1263, 1405 |
| Hsp92I | GRCGYC | 2 cut(s) | 932, 1250 |
| Hsp92II | CATG | 2 cut(s) | 346, 1508 |
| HspAI | GCGC | 3 cut(s) | 139, 662, 850 |
| KflI | GGGWCCC | 2 cut(s) | 486, 1365 |
| KroI | GCCGGC | 2 cut(s) | 497, 586 |
| KroNI | GCCGGC | 2 cut(s) | 499, 588 |
| Kzo9I | GATC | 4 cut(s) | 165, 310, 505, 981 |
| LmnI | GCTCC | 8 cut(s) | 257, 541, 767, 787, 973, 997, 1110, 1312 |
| Lsp1109I | GCAGC | 9 cut(s) | 508, 952, 975, 978, 1048, 1114, 1344, 1522, 1558 |
| LweI | GCATC | 1 cut(s) | 423 |
| MaeI | CTAG | 2 cut(s) | 57, 665 |
| MaeII | ACGT | 4 cut(s) | 392, 960, 1263, 1405 |
| MaeIII | GTNAC | 5 cut(s) | 604, 909, 1087, 1251, 1401 |
| MalI | GATC | 4 cut(s) | 167, 312, 507, 983 |
| MbiI | CCGCTC | 7 cut(s) | 116, 544, 790, 817, 1000, 1273, 1307 |
| MboI | GATC | 4 cut(s) | 165, 310, 505, 981 |
| MboII | GAAGA | 8 cut(s) | 80, 155, 158, 470, 716, 758, 793, 1177 |
| MfeI | CAATTG | 1 cut(s) | 861 |
| MhlI | GDGCHC | 4 cut(s) | 1115, 1198, 1305, 1324 |
| MluCI | AATT | 2 cut(s) | 328, 861 |
| MlyI | GAGTC | 2 cut(s) | 698, 1052 |
| MmeI | TCCRAC | 5 cut(s) | 127, 951, 1374, 1379, 1487 |
| MroNI | GCCGGC | 2 cut(s) | 497, 586 |
| MseI | TTAA | 2 cut(s) | 90, 1161 |
| MslI | CAYNNNNRTG | 2 cut(s) | 453, 1031 |
| MspA1I | CMGCKG | 6 cut(s) | 647, 1039, 1127, 1313, 1335, 1621 |
| MunI | CAATTG | 1 cut(s) | 861 |
| Mva1269I | GAATGC | 1 cut(s) | 1139 |
| MvnI | CGCG | 5 cut(s) | 139, 141, 156, 288, 850 |
| NaeI | GCCGGC | 2 cut(s) | 499, 588 |
| NdeII | GATC | 4 cut(s) | 165, 310, 505, 981 |
| NgoMIV | GCCGGC | 2 cut(s) | 497, 586 |
| NlaIII | CATG | 2 cut(s) | 346, 1508 |
| NmeAIII | GCCGAG | 2 cut(s) | 376, 863 |
| NmuCI | GTSAC | 3 cut(s) | 604, 1251, 1401 |
| NotI | GCGGCCGC | 1 cut(s) | 1122 |
| NruI | TCGCGA | 1 cut(s) | 288 |
| OliI | CACNNNNGTG | 1 cut(s) | 453 |
| PagI | TCATGA | 1 cut(s) | 1504 |
| PctI | GAATGC | 1 cut(s) | 1139 |
| PdiI | GCCGGC | 2 cut(s) | 499, 588 |
| PfeI | GAWTC | 1 cut(s) | 1477 |
| PflFI | GACNNNGTC | 1 cut(s) | 1390 |
| PleI | GAGTC | 2 cut(s) | 697, 1051 |
| PmaCI | CACGTG | 1 cut(s) | 1406 |
| PmlI | CACGTG | 1 cut(s) | 1406 |
| PpsI | GAGTC | 2 cut(s) | 697, 1051 |
| Ppu21I | YACGTR | 1 cut(s) | 1406 |
| PpuMI | RGGWCCY | 3 cut(s) | 18, 486, 1365 |
| Psp5II | RGGWCCY | 3 cut(s) | 18, 486, 1365 |
| PspCI | CACGTG | 1 cut(s) | 1406 |
| PspEI | GGTNACC | 1 cut(s) | 1087 |
| PspFI | CCCAGC | 7 cut(s) | 366, 647, 820, 1075, 1368, 1380, 1510 |
| PspOMI | GGGCCC | 1 cut(s) | 1194 |
| PspPPI | RGGWCCY | 3 cut(s) | 18, 486, 1365 |
| PstI | CTGCAG | 1 cut(s) | 996 |
| PsyI | GACNNNGTC | 1 cut(s) | 1390 |
| PvuII | CAGCTG | 1 cut(s) | 1313 |
| RruI | TCGCGA | 1 cut(s) | 288 |
| RsaI | GTAC | 2 cut(s) | 50, 347 |
| RsaNI | GTAC | 2 cut(s) | 49, 346 |
| RseI | CAYNNNNRTG | 2 cut(s) | 453, 1031 |
| SalI | GTCGAC | 1 cut(s) | 233 |
| SaqAI | TTAA | 2 cut(s) | 90, 1161 |
| Sau3AI | GATC | 4 cut(s) | 165, 310, 505, 981 |
| SchI | GAGTC | 2 cut(s) | 698, 1052 |
| SduI | GDGCHC | 4 cut(s) | 1115, 1198, 1305, 1324 |
| SfaNI | GCATC | 1 cut(s) | 423 |
| SfcI | CTRYAG | 3 cut(s) | 33, 992, 1314 |
| SinI | GGWCC | 5 cut(s) | 18, 486, 566, 731, 1365 |
| SmaI | CCCGGG | 2 cut(s) | 1199, 1433 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 453, 1031 |
| SrfI | GCCCGGGC | 1 cut(s) | 1199 |
| Sse9I | AATT | 2 cut(s) | 328, 861 |
| SspMI | CTAG | 2 cut(s) | 57, 665 |
| StyI | CCWWGG | 2 cut(s) | 451, 1245 |
| TaaI | ACNGT | 4 cut(s) | 41, 376, 685, 1117 |
| TaiI | ACGT | 4 cut(s) | 395, 963, 1266, 1408 |
| TaqI | TCGA | 4 cut(s) | 62, 112, 234, 1275 |
| TaqII | GACCGA | 1 cut(s) | 1190 |
| TasI | AATT | 2 cut(s) | 328, 861 |
| TfiI | GAWTC | 1 cut(s) | 1477 |
| Tru1I | TTAA | 2 cut(s) | 90, 1161 |
| Tru9I | TTAA | 2 cut(s) | 90, 1161 |
| TseFI | GTSAC | 3 cut(s) | 604, 1251, 1401 |
| TseI | GCWGC | 9 cut(s) | 521, 940, 988, 991, 1036, 1127, 1332, 1535, 1571 |
| Tsp45I | GTSAC | 3 cut(s) | 604, 1251, 1401 |
| TspDTI | ATGAA | 1 cut(s) | 969 |
| TspGWI | ACGGA | 2 cut(s) | 1373, 1470 |
| TspMI | CCCGGG | 2 cut(s) | 1197, 1431 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1390 |
| VpaK11BI | GGWCC | 5 cut(s) | 18, 486, 566, 731, 1365 |
| XapI | RAATTY | 1 cut(s) | 328 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 449 |
| XmaI | CCCGGG | 2 cut(s) | 1197, 1431 |
| XmiI | GTMKAC | 2 cut(s) | 128, 234 |
| XspI | CTAG | 2 cut(s) | 57, 665 |