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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 590 |
| AccBSI | CCGCTC | 4 cut(s) | 109, 247, 388, 400 |
| AcuI | CTGAAG | 2 cut(s) | 154, 470 |
| AfaI | GTAC | 4 cut(s) | 28, 145, 175, 556 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 280, 303, 387, 568, 580, 587 |
| AflIII | ACRYGT | 1 cut(s) | 432 |
| AgsI | TTSAA | 2 cut(s) | 479, 587 |
| AjiI | CACGTC | 1 cut(s) | 190 |
| AjnI | CCWGG | 4 cut(s) | 126, 216, 297, 574 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 4 cut(s) | 253, 370, 394, 539 |
| AluI | AGCT | 4 cut(s) | 253, 370, 394, 539 |
| Alw21I | GWGCWC | 1 cut(s) | 255 |
| AoxI | GGCC | 5 cut(s) | 124, 271, 294, 336, 510 |
| ApeKI | GCWGC | 2 cut(s) | 202, 442 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 483 |
| AspS9I | GGNCC | 4 cut(s) | 271, 295, 571, 578 |
| AsuHPI | GGTGA | 1 cut(s) | 89 |
| AvaII | GGWCC | 2 cut(s) | 571, 578 |
| BaeGI | GKGCMC | 1 cut(s) | 189 |
| BanI | GGYRCC | 1 cut(s) | 590 |
| BanII | GRGCYC | 1 cut(s) | 255 |
| BauI | CACGAG | 1 cut(s) | 360 |
| Bbv12I | GWGCWC | 1 cut(s) | 255 |
| BbvI | GCAGC | 2 cut(s) | 189, 429 |
| BceAI | ACGGC | 2 cut(s) | 137, 192 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 329, 363 |
| BciT130I | CCWGG | 4 cut(s) | 128, 218, 299, 576 |
| BfaI | CTAG | 1 cut(s) | 655 |
| BfmI | CTRYAG | 1 cut(s) | 275 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 371, 509 |
| BisI | GCNGC | 6 cut(s) | 21, 51, 124, 203, 351, 443 |
| BlsI | GCNGC | 6 cut(s) | 22, 52, 125, 204, 352, 444 |
| BmcAI | AGTACT | 1 cut(s) | 556 |
| Bme1390I | CCNGG | 4 cut(s) | 128, 218, 299, 576 |
| Bme18I | GGWCC | 2 cut(s) | 571, 578 |
| BmgBI | CACGTC | 1 cut(s) | 190 |
| BmgT120I | GGNCC | 4 cut(s) | 271, 295, 571, 578 |
| BmiI | GGNNCC | 2 cut(s) | 573, 592 |
| BmrFI | CCNGG | 4 cut(s) | 128, 218, 299, 576 |
| BmsI | GCATC | 1 cut(s) | 337 |
| BpmI | CTGGAG | 2 cut(s) | 149, 416 |
| Bpu10I | CCTNAGC | 1 cut(s) | 254 |
| BsaJI | CCNNGG | 4 cut(s) | 297, 462, 513, 574 |
| BsaWI | WCCGGW | 1 cut(s) | 580 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 77, 107 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 280, 303, 387, 568, 580, 587 |
| BseBI | CCWGG | 4 cut(s) | 128, 218, 299, 576 |
| BseDI | CCNNGG | 4 cut(s) | 297, 462, 513, 574 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 280, 303, 387, 568, 580, 587 |
| BseMII | CTCAG | 2 cut(s) | 268, 653 |
| BseRI | GAGGAG | 1 cut(s) | 275 |
| BseSI | GKGCMC | 1 cut(s) | 189 |
| BseXI | GCAGC | 2 cut(s) | 189, 429 |
| BshFI | GGCC | 5 cut(s) | 126, 273, 296, 338, 512 |
| BshNI | GGYRCC | 1 cut(s) | 590 |
| BsiHKAI | GWGCWC | 1 cut(s) | 255 |
| BsiSI | CCGG | 1 cut(s) | 581 |
| BslFI | GGGAC | 4 cut(s) | 296, 421, 506, 557 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 280, 303, 387, 568, 580, 587 |
| BsmFI | GGGAC | 4 cut(s) | 296, 421, 506, 557 |
| BsnI | GGCC | 5 cut(s) | 126, 273, 296, 338, 512 |
| Bsp1286I | GDGCHC | 2 cut(s) | 189, 255 |
| Bsp143I | GATC | 1 cut(s) | 34 |
| BspANI | GGCC | 5 cut(s) | 126, 273, 296, 338, 512 |
| BspCNI | CTCAG | 2 cut(s) | 267, 652 |
| BspLI | GGNNCC | 2 cut(s) | 573, 592 |
| BspT107I | GGYRCC | 1 cut(s) | 590 |
| BsrBI | CCGCTC | 4 cut(s) | 109, 247, 388, 400 |
| BssECI | CCNNGG | 4 cut(s) | 297, 462, 513, 574 |
| BssMI | GATC | 1 cut(s) | 34 |
| BssSI | CACGAG | 1 cut(s) | 360 |
| BssT1I | CCWWGG | 1 cut(s) | 462 |
| Bst2BI | CACGAG | 1 cut(s) | 360 |
| Bst2UI | CCWGG | 4 cut(s) | 128, 218, 299, 576 |
| Bst4CI | ACNGT | 4 cut(s) | 77, 344, 411, 571 |
| BstC8I | GCNNGC | 5 cut(s) | 107, 271, 372, 528, 595 |
| BstDEI | CTNAG | 2 cut(s) | 254, 639 |
| BstKTI | GATC | 1 cut(s) | 37 |
| BstMBI | GATC | 1 cut(s) | 34 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 56, 356, 371, 509, 536 |
| BstNI | CCWGG | 4 cut(s) | 128, 218, 299, 576 |
| BstNSI | RCATGY | 1 cut(s) | 436 |
| BstSCI | CCNGG | 4 cut(s) | 126, 216, 297, 574 |
| BstSFI | CTRYAG | 1 cut(s) | 275 |
| BstSLI | GKGCMC | 1 cut(s) | 189 |
| BstV1I | GCAGC | 2 cut(s) | 189, 429 |
| BsuRI | GGCC | 5 cut(s) | 126, 273, 296, 338, 512 |
| BtrI | CACGTC | 1 cut(s) | 190 |
| BtsIMutI | CAGTG | 1 cut(s) | 82 |
| Cac8I | GCNNGC | 5 cut(s) | 107, 271, 372, 528, 595 |
| Cfr13I | GGNCC | 4 cut(s) | 271, 295, 571, 578 |
| CseI | GACGC | 2 cut(s) | 333, 365 |
| Csp6I | GTAC | 4 cut(s) | 27, 144, 174, 555 |
| CviAII | CATG | 2 cut(s) | 206, 433 |
| CviQI | GTAC | 4 cut(s) | 27, 144, 174, 555 |
| DdeI | CTNAG | 2 cut(s) | 254, 639 |
| DpnI | GATC | 1 cut(s) | 36 |
| DpnII | GATC | 1 cut(s) | 34 |
| EciI | GGCGGA | 3 cut(s) | 236, 531, 633 |
| Ecl136II | GAGCTC | 1 cut(s) | 253 |
| Eco130I | CCWWGG | 1 cut(s) | 462 |
| Eco24I | GRGCYC | 1 cut(s) | 255 |
| Eco47I | GGWCC | 2 cut(s) | 571, 578 |
| Eco53kI | GAGCTC | 1 cut(s) | 253 |
| Eco57I | CTGAAG | 2 cut(s) | 154, 470 |
| EcoICRI | GAGCTC | 1 cut(s) | 253 |
| EcoRII | CCWGG | 4 cut(s) | 126, 216, 297, 574 |
| EcoT14I | CCWWGG | 1 cut(s) | 462 |
| EcoT38I | GRGCYC | 1 cut(s) | 255 |
| ErhI | CCWWGG | 1 cut(s) | 462 |
| FaeI | CATG | 2 cut(s) | 209, 436 |
| FaiI | YATR | 2 cut(s) | 207, 434 |
| FaqI | GGGAC | 4 cut(s) | 296, 421, 506, 557 |
| FatI | CATG | 2 cut(s) | 205, 432 |
| FauI | CCCGC | 6 cut(s) | 16, 240, 262, 381, 483, 531 |
| Fnu4HI | GCNGC | 6 cut(s) | 21, 51, 124, 203, 351, 443 |
| FriOI | GRGCYC | 1 cut(s) | 255 |
| Fsp4HI | GCNGC | 6 cut(s) | 21, 51, 124, 203, 351, 443 |
| FspBI | CTAG | 1 cut(s) | 655 |
| GluI | GCNGC | 6 cut(s) | 21, 51, 124, 203, 351, 443 |
| GsuI | CTGGAG | 2 cut(s) | 149, 416 |
| HaeIII | GGCC | 5 cut(s) | 126, 273, 296, 338, 512 |
| HapII | CCGG | 1 cut(s) | 581 |
| HgaI | GACGC | 2 cut(s) | 333, 365 |
| Hin1II | CATG | 2 cut(s) | 209, 436 |
| HincII | GTYRAC | 1 cut(s) | 157 |
| HindII | GTYRAC | 1 cut(s) | 157 |
| HinfI | GANTC | 5 cut(s) | 41, 224, 494, 621, 646 |
| HpaII | CCGG | 1 cut(s) | 581 |
| HphI | GGTGA | 1 cut(s) | 89 |
| Hpy166II | GTNNAC | 2 cut(s) | 80, 157 |
| Hpy188I | TCNGA | 1 cut(s) | 69 |
| Hpy188III | TCNNGA | 1 cut(s) | 38 |
| Hpy8I | GTNNAC | 2 cut(s) | 80, 157 |
| Hpy99I | CGWCG | 3 cut(s) | 194, 197, 327 |
| HpyAV | CCTTC | 3 cut(s) | 178, 466, 581 |
| HpyCH4III | ACNGT | 4 cut(s) | 77, 344, 411, 571 |
| HpyCH4IV | ACGT | 1 cut(s) | 189 |
| HpyCH4V | TGCA | 1 cut(s) | 205 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 56, 356, 371, 509, 536 |
| HpyF3I | CTNAG | 2 cut(s) | 254, 639 |
| HpySE526I | ACGT | 1 cut(s) | 189 |
| Hsp92II | CATG | 2 cut(s) | 209, 436 |
| Kzo9I | GATC | 1 cut(s) | 34 |
| LmnI | GCTCC | 4 cut(s) | 250, 391, 397, 544 |
| Lsp1109I | GCAGC | 2 cut(s) | 189, 429 |
| LweI | GCATC | 1 cut(s) | 337 |
| MaeI | CTAG | 1 cut(s) | 655 |
| MaeII | ACGT | 1 cut(s) | 189 |
| MalI | GATC | 1 cut(s) | 36 |
| MbiI | CCGCTC | 4 cut(s) | 109, 247, 388, 400 |
| MboI | GATC | 1 cut(s) | 34 |
| MboII | GAAGA | 1 cut(s) | 544 |
| MhlI | GDGCHC | 2 cut(s) | 189, 255 |
| MlyI | GAGTC | 5 cut(s) | 35, 233, 503, 615, 640 |
| MmeI | TCCRAC | 1 cut(s) | 402 |
| MnlI | CCTC | 8 cut(s) | 110, 124, 253, 256, 273, 286, 508, 622 |
| MroXI | GAANNNNTTC | 1 cut(s) | 483 |
| MspA1I | CMGCKG | 2 cut(s) | 490, 643 |
| MspI | CCGG | 1 cut(s) | 581 |
| MspR9I | CCNGG | 4 cut(s) | 128, 218, 299, 576 |
| MvaI | CCWGG | 4 cut(s) | 128, 218, 299, 576 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 56, 356, 371, 509, 536 |
| NdeII | GATC | 1 cut(s) | 34 |
| NlaIII | CATG | 2 cut(s) | 209, 436 |
| NlaIV | GGNNCC | 2 cut(s) | 573, 592 |
| NmeAIII | GCCGAG | 2 cut(s) | 85, 538 |
| NspI | RCATGY | 1 cut(s) | 436 |
| PciI | ACATGT | 1 cut(s) | 432 |
| PdmI | GAANNNNTTC | 1 cut(s) | 483 |
| PkrI | GCNGC | 6 cut(s) | 22, 52, 125, 204, 352, 444 |
| PleI | GAGTC | 5 cut(s) | 35, 232, 502, 615, 640 |
| PpsI | GAGTC | 5 cut(s) | 35, 232, 502, 615, 640 |
| PscI | ACATGT | 1 cut(s) | 432 |
| Psp124BI | GAGCTC | 1 cut(s) | 255 |
| Psp6I | CCWGG | 4 cut(s) | 126, 216, 297, 574 |
| PspGI | CCWGG | 4 cut(s) | 126, 216, 297, 574 |
| PspN4I | GGNNCC | 2 cut(s) | 573, 592 |
| PspPI | GGNCC | 4 cut(s) | 271, 295, 571, 578 |
| RsaI | GTAC | 4 cut(s) | 28, 145, 175, 556 |
| RsaNI | GTAC | 4 cut(s) | 27, 144, 174, 555 |
| SacI | GAGCTC | 1 cut(s) | 255 |
| SatI | GCNGC | 6 cut(s) | 21, 51, 124, 203, 351, 443 |
| Sau3AI | GATC | 1 cut(s) | 34 |
| Sau96I | GGNCC | 4 cut(s) | 271, 295, 571, 578 |
| ScaI | AGTACT | 1 cut(s) | 556 |
| SchI | GAGTC | 5 cut(s) | 35, 233, 503, 615, 640 |
| ScrFI | CCNGG | 4 cut(s) | 128, 218, 299, 576 |
| SduI | GDGCHC | 2 cut(s) | 189, 255 |
| SfaNI | GCATC | 1 cut(s) | 337 |
| SfcI | CTRYAG | 1 cut(s) | 275 |
| SinI | GGWCC | 2 cut(s) | 571, 578 |
| SspMI | CTAG | 1 cut(s) | 655 |
| SstI | GAGCTC | 1 cut(s) | 255 |
| StyD4I | CCNGG | 4 cut(s) | 126, 216, 297, 574 |
| StyI | CCWWGG | 1 cut(s) | 462 |
| TaaI | ACNGT | 4 cut(s) | 77, 344, 411, 571 |
| TaiI | ACGT | 1 cut(s) | 192 |
| TaqI | TCGA | 1 cut(s) | 318 |
| TatI | WGTACW | 1 cut(s) | 554 |
| TauI | GCSGC | 4 cut(s) | 23, 53, 126, 353 |
| TscAI | CASTG | 1 cut(s) | 82 |
| TseI | GCWGC | 2 cut(s) | 202, 442 |
| TspDTI | ATGAA | 1 cut(s) | 222 |
| TspRI | CASTG | 1 cut(s) | 82 |
| VpaK11BI | GGWCC | 2 cut(s) | 571, 578 |
| XceI | RCATGY | 1 cut(s) | 436 |
| XmnI | GAANNNNTTC | 1 cut(s) | 483 |
| XspI | CTAG | 1 cut(s) | 655 |
| ZrmI | AGTACT | 1 cut(s) | 556 |