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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 2 cut(s) | 500, 623 |
| AccB1I | GGYRCC | 5 cut(s) | 103, 409, 500, 623, 708 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 419 |
| AccBSI | CCGCTC | 5 cut(s) | 26, 101, 178, 516, 650 |
| AccII | CGCG | 4 cut(s) | 158, 311, 472, 589 |
| AclWI | GGATC | 2 cut(s) | 234, 297 |
| AcoI | YGGCCR | 2 cut(s) | 436, 600 |
| AcyI | GRCGYC | 3 cut(s) | 430, 709, 780 |
| AfaI | GTAC | 5 cut(s) | 188, 295, 338, 502, 625 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 89, 223, 419, 441, 473, 510, 654, 767, 853 |
| AgsI | TTSAA | 1 cut(s) | 418 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 671 |
| AjiI | CACGTC | 1 cut(s) | 172 |
| AluBI | AGCT | 4 cut(s) | 32, 199, 391, 741 |
| AluI | AGCT | 4 cut(s) | 32, 199, 391, 741 |
| Alw21I | GWGCWC | 1 cut(s) | 34 |
| Alw26I | GTCTC | 2 cut(s) | 58, 162 |
| AlwI | GGATC | 2 cut(s) | 234, 297 |
| Ama87I | CYCGRG | 5 cut(s) | 16, 33, 576, 612, 679 |
| AoxI | GGCC | 6 cut(s) | 12, 258, 436, 484, 492, 600 |
| ApeKI | GCWGC | 4 cut(s) | 141, 302, 391, 741 |
| Asp718I | GGTACC | 2 cut(s) | 500, 623 |
| AspLEI | GCGC | 3 cut(s) | 131, 472, 711 |
| AspS9I | GGNCC | 7 cut(s) | 13, 80, 485, 555, 573, 840, 897 |
| AsuC2I | CCSGG | 4 cut(s) | 435, 467, 895, 916 |
| AsuHPI | GGTGA | 2 cut(s) | 184, 256 |
| AsuII | TTCGAA | 1 cut(s) | 455 |
| AsuNHI | GCTAGC | 1 cut(s) | 815 |
| AvaI | CYCGRG | 5 cut(s) | 16, 33, 576, 612, 679 |
| AvaII | GGWCC | 5 cut(s) | 80, 555, 573, 840, 897 |
| BaeGI | GKGCMC | 1 cut(s) | 412 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 615, 648 |
| BanI | GGYRCC | 5 cut(s) | 103, 409, 500, 623, 708 |
| BanII | GRGCYC | 1 cut(s) | 34 |
| BauI | CACGAG | 1 cut(s) | 651 |
| Bbv12I | GWGCWC | 1 cut(s) | 34 |
| BbvI | GCAGC | 4 cut(s) | 153, 289, 378, 728 |
| BccI | CCATC | 3 cut(s) | 614, 791, 801 |
| BceAI | ACGGC | 2 cut(s) | 423, 656 |
| BcnI | CCSGG | 4 cut(s) | 435, 467, 895, 916 |
| BcoDI | GTCTC | 2 cut(s) | 58, 162 |
| BfaI | CTAG | 2 cut(s) | 200, 816 |
| BfoI | RGCGCY | 1 cut(s) | 712 |
| BglII | AGATCT | 1 cut(s) | 580 |
| Bme1390I | CCNGG | 4 cut(s) | 435, 467, 895, 916 |
| Bme18I | GGWCC | 5 cut(s) | 80, 555, 573, 840, 897 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 671 |
| BmeT110I | CYCGRG | 5 cut(s) | 16, 33, 576, 612, 679 |
| BmgBI | CACGTC | 1 cut(s) | 172 |
| BmgT120I | GGNCC | 7 cut(s) | 13, 80, 485, 555, 573, 840, 897 |
| BmrFI | CCNGG | 4 cut(s) | 435, 467, 895, 916 |
| BmsI | GCATC | 4 cut(s) | 62, 116, 124, 708 |
| BmtI | GCTAGC | 1 cut(s) | 819 |
| Bpu14I | TTCGAA | 1 cut(s) | 455 |
| BpuMI | CCSGG | 4 cut(s) | 435, 467, 895, 916 |
| BsaHI | GRCGYC | 3 cut(s) | 430, 709, 780 |
| BsaJI | CCNNGG | 8 cut(s) | 76, 261, 309, 354, 465, 489, 495, 587 |
| BsaWI | WCCGGW | 1 cut(s) | 696 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 547, 577 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 89, 223, 419, 441, 473, 510, 654, 767, 853 |
| BseDI | CCNNGG | 8 cut(s) | 76, 261, 309, 354, 465, 489, 495, 587 |
| BseGI | GGATG | 6 cut(s) | 77, 98, 547, 625, 783, 882 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 89, 223, 419, 441, 473, 510, 654, 767, 853 |
| BseMII | CTCAG | 1 cut(s) | 48 |
| BseRI | GAGGAG | 2 cut(s) | 54, 299 |
| BseSI | GKGCMC | 1 cut(s) | 412 |
| BseX3I | CGGCCG | 1 cut(s) | 436 |
| BseXI | GCAGC | 4 cut(s) | 153, 289, 378, 728 |
| Bsh1236I | CGCG | 4 cut(s) | 158, 311, 472, 589 |
| Bsh1285I | CGRYCG | 3 cut(s) | 354, 439, 663 |
| BshFI | GGCC | 6 cut(s) | 14, 260, 438, 486, 494, 602 |
| BshNI | GGYRCC | 5 cut(s) | 103, 409, 500, 623, 708 |
| BsiEI | CGRYCG | 3 cut(s) | 354, 439, 663 |
| BsiHKAI | GWGCWC | 1 cut(s) | 34 |
| BsiHKCI | CYCGRG | 5 cut(s) | 16, 33, 576, 612, 679 |
| BsiSI | CCGG | 6 cut(s) | 435, 467, 536, 697, 895, 915 |
| BsiWI | CGTACG | 1 cut(s) | 293 |
| BslFI | GGGAC | 4 cut(s) | 200, 417, 559, 883 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 89, 223, 419, 441, 473, 510, 654, 767, 853 |
| BsmAI | GTCTC | 2 cut(s) | 58, 162 |
| BsmBI | CGTCTC | 1 cut(s) | 162 |
| BsmFI | GGGAC | 4 cut(s) | 200, 417, 559, 883 |
| BsmI | GAATGC | 3 cut(s) | 126, 463, 756 |
| BsnI | GGCC | 6 cut(s) | 14, 260, 438, 486, 494, 602 |
| BsoBI | CYCGRG | 5 cut(s) | 16, 33, 576, 612, 679 |
| Bsp119I | TTCGAA | 1 cut(s) | 455 |
| Bsp1286I | GDGCHC | 2 cut(s) | 34, 412 |
| Bsp143I | GATC | 5 cut(s) | 43, 226, 289, 580, 660 |
| Bsp68I | TCGCGA | 1 cut(s) | 158 |
| BspANI | GGCC | 6 cut(s) | 14, 260, 438, 486, 494, 602 |
| BspCNI | CTCAG | 1 cut(s) | 49 |
| BspFNI | CGCG | 4 cut(s) | 158, 311, 472, 589 |
| BspOI | GCTAGC | 1 cut(s) | 819 |
| BspPI | GGATC | 2 cut(s) | 234, 297 |
| BspT104I | TTCGAA | 1 cut(s) | 455 |
| BspT107I | GGYRCC | 5 cut(s) | 103, 409, 500, 623, 708 |
| BsrBI | CCGCTC | 5 cut(s) | 26, 101, 178, 516, 650 |
| BssECI | CCNNGG | 8 cut(s) | 76, 261, 309, 354, 465, 489, 495, 587 |
| BssMI | GATC | 5 cut(s) | 43, 226, 289, 580, 660 |
| BssNI | GRCGYC | 3 cut(s) | 430, 709, 780 |
| BssSI | CACGAG | 1 cut(s) | 651 |
| BssT1I | CCWWGG | 2 cut(s) | 76, 489 |
| Bst2BI | CACGAG | 1 cut(s) | 651 |
| Bst4CI | ACNGT | 1 cut(s) | 50 |
| BstACI | GRCGYC | 3 cut(s) | 430, 709, 780 |
| BstBI | TTCGAA | 1 cut(s) | 455 |
| BstC8I | GCNNGC | 2 cut(s) | 139, 817 |
| BstDEI | CTNAG | 1 cut(s) | 57 |
| BstDSI | CCRYGG | 2 cut(s) | 309, 587 |
| BstF5I | GGATG | 6 cut(s) | 77, 98, 547, 625, 783, 882 |
| BstFNI | CGCG | 4 cut(s) | 158, 311, 472, 589 |
| BstH2I | RGCGCY | 1 cut(s) | 712 |
| BstHHI | GCGC | 3 cut(s) | 131, 472, 711 |
| BstKTI | GATC | 5 cut(s) | 46, 229, 292, 583, 663 |
| BstMAI | GTCTC | 2 cut(s) | 58, 162 |
| BstMBI | GATC | 5 cut(s) | 43, 226, 289, 580, 660 |
| BstMCI | CGRYCG | 3 cut(s) | 354, 439, 663 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 266, 308, 314, 458, 467, 690 |
| BstSCI | CCNGG | 4 cut(s) | 433, 465, 893, 914 |
| BstSLI | GKGCMC | 1 cut(s) | 412 |
| BstUI | CGCG | 4 cut(s) | 158, 311, 472, 589 |
| BstV1I | GCAGC | 4 cut(s) | 153, 289, 378, 728 |
| BstX2I | RGATCY | 1 cut(s) | 580 |
| BstYI | RGATCY | 1 cut(s) | 580 |
| BstZI | CGGCCG | 1 cut(s) | 436 |
| BsuRI | GGCC | 6 cut(s) | 14, 260, 438, 486, 494, 602 |
| BtgI | CCRYGG | 2 cut(s) | 309, 587 |
| BtgZI | GCGATG | 1 cut(s) | 139 |
| BtrI | CACGTC | 1 cut(s) | 172 |
| BtsCI | GGATG | 6 cut(s) | 77, 98, 547, 625, 783, 882 |
| BtuMI | TCGCGA | 1 cut(s) | 158 |
| Cac8I | GCNNGC | 2 cut(s) | 139, 817 |
| CfoI | GCGC | 3 cut(s) | 131, 472, 711 |
| Cfr13I | GGNCC | 7 cut(s) | 13, 80, 485, 555, 573, 840, 897 |
| Cfr42I | CCGCGG | 2 cut(s) | 312, 590 |
| CseI | GACGC | 3 cut(s) | 419, 521, 788 |
| Csp6I | GTAC | 5 cut(s) | 187, 294, 337, 501, 624 |
| CviQI | GTAC | 5 cut(s) | 187, 294, 337, 501, 624 |
| DdeI | CTNAG | 1 cut(s) | 57 |
| DinI | GGCGCC | 1 cut(s) | 710 |
| DpnI | GATC | 5 cut(s) | 45, 228, 291, 582, 662 |
| DpnII | GATC | 5 cut(s) | 43, 226, 289, 580, 660 |
| DriI | GACNNNNNGTC | 1 cut(s) | 671 |
| EaeI | YGGCCR | 2 cut(s) | 436, 600 |
| EagI | CGGCCG | 1 cut(s) | 436 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 671 |
| EciI | GGCGGA | 4 cut(s) | 269, 296, 347, 554 |
| Ecl136II | GAGCTC | 1 cut(s) | 32 |
| EclXI | CGGCCG | 1 cut(s) | 436 |
| Eco130I | CCWWGG | 2 cut(s) | 76, 489 |
| Eco24I | GRGCYC | 1 cut(s) | 34 |
| Eco47I | GGWCC | 5 cut(s) | 80, 555, 573, 840, 897 |
| Eco52I | CGGCCG | 1 cut(s) | 436 |
| Eco53kI | GAGCTC | 1 cut(s) | 32 |
| Eco88I | CYCGRG | 5 cut(s) | 16, 33, 576, 612, 679 |
| EcoICRI | GAGCTC | 1 cut(s) | 32 |
| EcoT14I | CCWWGG | 2 cut(s) | 76, 489 |
| EcoT38I | GRGCYC | 1 cut(s) | 34 |
| EgeI | GGCGCC | 1 cut(s) | 710 |
| EheI | GGCGCC | 1 cut(s) | 710 |
| ErhI | CCWWGG | 2 cut(s) | 76, 489 |
| Esp3I | CGTCTC | 1 cut(s) | 162 |
| FaiI | YATR | 3 cut(s) | 212, 609, 838 |
| FaqI | GGGAC | 4 cut(s) | 200, 417, 559, 883 |
| FauI | CCCGC | 5 cut(s) | 19, 225, 509, 567, 594 |
| FokI | GGATG | 6 cut(s) | 84, 105, 554, 632, 770, 889 |
| FriOI | GRGCYC | 1 cut(s) | 34 |
| FspBI | CTAG | 2 cut(s) | 200, 816 |
| GlaI | GCGC | 3 cut(s) | 130, 471, 710 |
| HaeII | RGCGCY | 1 cut(s) | 712 |
| HaeIII | GGCC | 6 cut(s) | 14, 260, 438, 486, 494, 602 |
| HapII | CCGG | 6 cut(s) | 435, 467, 536, 697, 895, 915 |
| HgaI | GACGC | 3 cut(s) | 419, 521, 788 |
| HhaI | GCGC | 3 cut(s) | 131, 472, 711 |
| Hin1I | GRCGYC | 3 cut(s) | 430, 709, 780 |
| Hin6I | GCGC | 3 cut(s) | 129, 470, 709 |
| HinP1I | GCGC | 3 cut(s) | 129, 470, 709 |
| HinfI | GANTC | 2 cut(s) | 545, 911 |
| HpaII | CCGG | 6 cut(s) | 435, 467, 536, 697, 895, 915 |
| HphI | GGTGA | 2 cut(s) | 184, 256 |
| Hpy166II | GTNNAC | 1 cut(s) | 555 |
| Hpy188I | TCNGA | 2 cut(s) | 58, 665 |
| Hpy188III | TCNNGA | 4 cut(s) | 157, 576, 715, 921 |
| Hpy8I | GTNNAC | 1 cut(s) | 555 |
| Hpy99I | CGWCG | 4 cut(s) | 112, 158, 444, 677 |
| HpyAV | CCTTC | 6 cut(s) | 106, 217, 244, 516, 853, 895 |
| HpyCH4III | ACNGT | 1 cut(s) | 50 |
| HpyCH4IV | ACGT | 2 cut(s) | 171, 189 |
| HpyCH4V | TGCA | 1 cut(s) | 461 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 266, 308, 314, 458, 467, 690 |
| HpyF3I | CTNAG | 1 cut(s) | 57 |
| HpySE526I | ACGT | 2 cut(s) | 171, 189 |
| Hsp92I | GRCGYC | 3 cut(s) | 430, 709, 780 |
| HspAI | GCGC | 3 cut(s) | 129, 470, 709 |
| KasI | GGCGCC | 1 cut(s) | 708 |
| KpnI | GGTACC | 2 cut(s) | 504, 627 |
| KspI | CCGCGG | 2 cut(s) | 312, 590 |
| Kzo9I | GATC | 5 cut(s) | 43, 226, 289, 580, 660 |
| LmnI | GCTCC | 6 cut(s) | 23, 29, 98, 175, 388, 513 |
| LpnPI | CCDG | 5 cut(s) | 448, 480, 549, 710, 908 |
| Lsp1109I | GCAGC | 4 cut(s) | 153, 289, 378, 728 |
| LweI | GCATC | 4 cut(s) | 62, 116, 124, 708 |
| MaeI | CTAG | 2 cut(s) | 200, 816 |
| MaeII | ACGT | 2 cut(s) | 171, 189 |
| MaeIII | GTNAC | 3 cut(s) | 190, 631, 776 |
| MalI | GATC | 5 cut(s) | 45, 228, 291, 582, 662 |
| MbiI | CCGCTC | 5 cut(s) | 26, 101, 178, 516, 650 |
| MboI | GATC | 5 cut(s) | 43, 226, 289, 580, 660 |
| MboII | GAAGA | 1 cut(s) | 259 |
| MflI | RGATCY | 1 cut(s) | 580 |
| MhlI | GDGCHC | 2 cut(s) | 34, 412 |
| Mly113I | GGCGCC | 1 cut(s) | 709 |
| MlyI | GAGTC | 1 cut(s) | 539 |
| MmeI | TCCRAC | 1 cut(s) | 886 |
| MseI | TTAA | 1 cut(s) | 321 |
| MspA1I | CMGCKG | 2 cut(s) | 311, 589 |
| MspI | CCGG | 6 cut(s) | 435, 467, 536, 697, 895, 915 |
| MspR9I | CCNGG | 4 cut(s) | 435, 467, 895, 916 |
| Mva1269I | GAATGC | 3 cut(s) | 126, 463, 756 |
| MvnI | CGCG | 4 cut(s) | 158, 311, 472, 589 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 266, 308, 314, 458, 467, 690 |
| NarI | GGCGCC | 1 cut(s) | 709 |
| NciI | CCSGG | 4 cut(s) | 435, 467, 895, 916 |
| NdeII | GATC | 5 cut(s) | 43, 226, 289, 580, 660 |
| NheI | GCTAGC | 1 cut(s) | 815 |
| NmeAIII | GCCGAG | 2 cut(s) | 286, 520 |
| NmuCI | GTSAC | 2 cut(s) | 190, 776 |
| NruI | TCGCGA | 1 cut(s) | 158 |
| NspV | TTCGAA | 1 cut(s) | 455 |
| PaeR7I | CTCGAG | 1 cut(s) | 612 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 155, 351, 669, 816 |
| PctI | GAATGC | 3 cut(s) | 126, 463, 756 |
| PfeI | GAWTC | 1 cut(s) | 911 |
| Pfl23II | CGTACG | 1 cut(s) | 293 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 419 |
| Ple19I | CGATCG | 1 cut(s) | 663 |
| PleI | GAGTC | 1 cut(s) | 539 |
| PluTI | GGCGCC | 1 cut(s) | 712 |
| PpsI | GAGTC | 1 cut(s) | 539 |
| Psp124BI | GAGCTC | 1 cut(s) | 34 |
| PspLI | CGTACG | 1 cut(s) | 293 |
| PspPI | GGNCC | 7 cut(s) | 13, 80, 485, 555, 573, 840, 897 |
| PspXI | VCTCGAGB | 1 cut(s) | 612 |
| PsuI | RGATCY | 1 cut(s) | 580 |
| PvuI | CGATCG | 1 cut(s) | 663 |
| RruI | TCGCGA | 1 cut(s) | 158 |
| RsaI | GTAC | 5 cut(s) | 188, 295, 338, 502, 625 |
| RsaNI | GTAC | 5 cut(s) | 187, 294, 337, 501, 624 |
| SacI | GAGCTC | 1 cut(s) | 34 |
| SacII | CCGCGG | 2 cut(s) | 312, 590 |
| SaqAI | TTAA | 1 cut(s) | 321 |
| Sau3AI | GATC | 5 cut(s) | 43, 226, 289, 580, 660 |
| Sau96I | GGNCC | 7 cut(s) | 13, 80, 485, 555, 573, 840, 897 |
| SchI | GAGTC | 1 cut(s) | 539 |
| ScrFI | CCNGG | 4 cut(s) | 435, 467, 895, 916 |
| SduI | GDGCHC | 2 cut(s) | 34, 412 |
| SfaNI | GCATC | 4 cut(s) | 62, 116, 124, 708 |
| SfoI | GGCGCC | 1 cut(s) | 710 |
| Sfr274I | CTCGAG | 1 cut(s) | 612 |
| Sfr303I | CCGCGG | 2 cut(s) | 312, 590 |
| SfuI | TTCGAA | 1 cut(s) | 455 |
| SgrBI | CCGCGG | 2 cut(s) | 312, 590 |
| SinI | GGWCC | 5 cut(s) | 80, 555, 573, 840, 897 |
| SlaI | CTCGAG | 1 cut(s) | 612 |
| SmlI | CTYRAG | 1 cut(s) | 612 |
| SmoI | CTYRAG | 1 cut(s) | 612 |
| SspDI | GGCGCC | 1 cut(s) | 708 |
| SspMI | CTAG | 2 cut(s) | 200, 816 |
| SstI | GAGCTC | 1 cut(s) | 34 |
| StyD4I | CCNGG | 4 cut(s) | 433, 465, 893, 914 |
| StyI | CCWWGG | 2 cut(s) | 76, 489 |
| TaaI | ACNGT | 1 cut(s) | 50 |
| TaiI | ACGT | 2 cut(s) | 174, 192 |
| TaqI | TCGA | 5 cut(s) | 6, 455, 613, 659, 716 |
| TaqII | GACCGA | 3 cut(s) | 97, 368, 561 |
| TatI | WGTACW | 1 cut(s) | 336 |
| TauI | GCSGC | 6 cut(s) | 104, 308, 311, 452, 592, 595 |
| TfiI | GAWTC | 1 cut(s) | 911 |
| Tru1I | TTAA | 1 cut(s) | 321 |
| Tru9I | TTAA | 1 cut(s) | 321 |
| TseFI | GTSAC | 2 cut(s) | 190, 776 |
| TseI | GCWGC | 4 cut(s) | 141, 302, 391, 741 |
| Tsp45I | GTSAC | 2 cut(s) | 190, 776 |
| TspDTI | ATGAA | 1 cut(s) | 877 |
| TspGWI | ACGGA | 1 cut(s) | 142 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 419 |
| VpaK11BI | GGWCC | 5 cut(s) | 80, 555, 573, 840, 897 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 83 |
| XhoI | CTCGAG | 1 cut(s) | 612 |
| XspI | CTAG | 2 cut(s) | 200, 816 |