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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 230 |
| Acc36I | ACCTGC | 1 cut(s) | 230 |
| AccB1I | GGYRCC | 2 cut(s) | 53, 220 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 118 |
| AciI | CCGC | 7 cut(s) | 29, 48, 122, 152, 183, 254, 311 |
| AcoI | YGGCCR | 1 cut(s) | 133 |
| AcsI | RAATTY | 1 cut(s) | 81 |
| AcyI | GRCGYC | 1 cut(s) | 221 |
| AfaI | GTAC | 1 cut(s) | 348 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 118, 151, 260, 310, 340 |
| AgsI | TTSAA | 1 cut(s) | 298 |
| AluBI | AGCT | 2 cut(s) | 267, 275 |
| AluI | AGCT | 2 cut(s) | 267, 275 |
| Alw21I | GWGCWC | 1 cut(s) | 269 |
| AoxI | GGCC | 3 cut(s) | 86, 133, 301 |
| ApeKI | GCWGC | 2 cut(s) | 6, 229 |
| ApoI | RAATTY | 1 cut(s) | 81 |
| AspLEI | GCGC | 1 cut(s) | 223 |
| AspS9I | GGNCC | 2 cut(s) | 171, 316 |
| AsuC2I | CCSGG | 1 cut(s) | 161 |
| AsuHPI | GGTGA | 1 cut(s) | 254 |
| AvaII | GGWCC | 2 cut(s) | 171, 316 |
| BalI | TGGCCA | 1 cut(s) | 135 |
| BanI | GGYRCC | 2 cut(s) | 53, 220 |
| BanII | GRGCYC | 1 cut(s) | 269 |
| BauI | CACGAG | 1 cut(s) | 15 |
| Bbv12I | GWGCWC | 1 cut(s) | 269 |
| BbvI | GCAGC | 1 cut(s) | 216 |
| BcnI | CCSGG | 1 cut(s) | 161 |
| BfoI | RGCGCY | 1 cut(s) | 224 |
| BfuAI | ACCTGC | 1 cut(s) | 230 |
| BisI | GCNGC | 3 cut(s) | 7, 230, 254 |
| BlsI | GCNGC | 3 cut(s) | 8, 231, 255 |
| Bme1390I | CCNGG | 1 cut(s) | 161 |
| Bme18I | GGWCC | 2 cut(s) | 171, 316 |
| BmgT120I | GGNCC | 2 cut(s) | 171, 316 |
| BmiI | GGNNCC | 4 cut(s) | 55, 172, 222, 317 |
| BmrFI | CCNGG | 1 cut(s) | 161 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 28, 60 |
| BpuEI | CTTGAG | 1 cut(s) | 269 |
| BpuMI | CCSGG | 1 cut(s) | 161 |
| BsaHI | GRCGYC | 1 cut(s) | 221 |
| BsaJI | CCNNGG | 3 cut(s) | 32, 178, 224 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 118, 151, 260, 310, 340 |
| Bse118I | RCCGGY | 1 cut(s) | 256 |
| Bse1I | ACTGG | 1 cut(s) | 312 |
| BseDI | CCNNGG | 3 cut(s) | 32, 178, 224 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 118, 151, 260, 310, 340 |
| BseNI | ACTGG | 1 cut(s) | 312 |
| BseXI | GCAGC | 1 cut(s) | 216 |
| BshFI | GGCC | 3 cut(s) | 88, 135, 303 |
| BshNI | GGYRCC | 2 cut(s) | 53, 220 |
| BsiHKAI | GWGCWC | 1 cut(s) | 269 |
| BsiSI | CCGG | 2 cut(s) | 160, 257 |
| BslFI | GGGAC | 1 cut(s) | 329 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 118, 151, 260, 310, 340 |
| BsmFI | GGGAC | 1 cut(s) | 329 |
| BsnI | GGCC | 3 cut(s) | 88, 135, 303 |
| Bsp1286I | GDGCHC | 1 cut(s) | 269 |
| Bsp143I | GATC | 2 cut(s) | 277, 357 |
| BspACI | CCGC | 7 cut(s) | 29, 48, 122, 152, 183, 254, 311 |
| BspANI | GGCC | 3 cut(s) | 88, 135, 303 |
| BspLI | GGNNCC | 4 cut(s) | 55, 172, 222, 317 |
| BspMI | ACCTGC | 1 cut(s) | 230 |
| BspT107I | GGYRCC | 2 cut(s) | 53, 220 |
| BsrFI | RCCGGY | 1 cut(s) | 256 |
| BsrI | ACTGG | 1 cut(s) | 312 |
| BssAI | RCCGGY | 1 cut(s) | 256 |
| BssECI | CCNNGG | 3 cut(s) | 32, 178, 224 |
| BssMI | GATC | 2 cut(s) | 277, 357 |
| BssNI | GRCGYC | 1 cut(s) | 221 |
| BssSI | CACGAG | 1 cut(s) | 15 |
| BssT1I | CCWWGG | 1 cut(s) | 32 |
| Bst2BI | CACGAG | 1 cut(s) | 15 |
| Bst4CI | ACNGT | 2 cut(s) | 179, 339 |
| BstACI | GRCGYC | 1 cut(s) | 221 |
| BstC8I | GCNNGC | 1 cut(s) | 258 |
| BstDEI | CTNAG | 1 cut(s) | 288 |
| BstDSI | CCRYGG | 1 cut(s) | 178 |
| BstH2I | RGCGCY | 1 cut(s) | 224 |
| BstHHI | GCGC | 1 cut(s) | 223 |
| BstKTI | GATC | 2 cut(s) | 280, 360 |
| BstMBI | GATC | 2 cut(s) | 277, 357 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 62, 85, 229 |
| BstSCI | CCNGG | 1 cut(s) | 159 |
| BstV1I | GCAGC | 1 cut(s) | 216 |
| BsuRI | GGCC | 3 cut(s) | 88, 135, 303 |
| BtgI | CCRYGG | 1 cut(s) | 178 |
| BveI | ACCTGC | 1 cut(s) | 230 |
| Cac8I | GCNNGC | 1 cut(s) | 258 |
| CfoI | GCGC | 1 cut(s) | 223 |
| Cfr10I | RCCGGY | 1 cut(s) | 256 |
| Cfr13I | GGNCC | 2 cut(s) | 171, 316 |
| Csp6I | GTAC | 1 cut(s) | 347 |
| CviAII | CATG | 1 cut(s) | 137 |
| CviJI | RGCY | 7 cut(s) | 88, 135, 229, 253, 267, 275, 303 |
| CviKI_1 | RGCY | 7 cut(s) | 88, 135, 229, 253, 267, 275, 303 |
| CviQI | GTAC | 1 cut(s) | 347 |
| DdeI | CTNAG | 1 cut(s) | 288 |
| DinI | GGCGCC | 1 cut(s) | 222 |
| DpnI | GATC | 2 cut(s) | 279, 359 |
| DpnII | GATC | 2 cut(s) | 277, 357 |
| EaeI | YGGCCR | 1 cut(s) | 133 |
| EciI | GGCGGA | 2 cut(s) | 18, 198 |
| Ecl136II | GAGCTC | 1 cut(s) | 267 |
| Eco130I | CCWWGG | 1 cut(s) | 32 |
| Eco24I | GRGCYC | 1 cut(s) | 269 |
| Eco47I | GGWCC | 2 cut(s) | 171, 316 |
| Eco53kI | GAGCTC | 1 cut(s) | 267 |
| EcoICRI | GAGCTC | 1 cut(s) | 267 |
| EcoO109I | RGGNCCY | 2 cut(s) | 171, 316 |
| EcoT14I | CCWWGG | 1 cut(s) | 32 |
| EcoT38I | GRGCYC | 1 cut(s) | 269 |
| EgeI | GGCGCC | 1 cut(s) | 222 |
| EheI | GGCGCC | 1 cut(s) | 222 |
| ErhI | CCWWGG | 1 cut(s) | 32 |
| FaeI | CATG | 1 cut(s) | 140 |
| FaiI | YATR | 3 cut(s) | 117, 138, 214 |
| FaqI | GGGAC | 1 cut(s) | 329 |
| FatI | CATG | 1 cut(s) | 136 |
| FauI | CCCGC | 2 cut(s) | 55, 304 |
| Fnu4HI | GCNGC | 3 cut(s) | 7, 230, 254 |
| FriOI | GRGCYC | 1 cut(s) | 269 |
| Fsp4HI | GCNGC | 3 cut(s) | 7, 230, 254 |
| GlaI | GCGC | 1 cut(s) | 222 |
| GluI | GCNGC | 3 cut(s) | 7, 230, 254 |
| HaeII | RGCGCY | 1 cut(s) | 224 |
| HaeIII | GGCC | 3 cut(s) | 88, 135, 303 |
| HapII | CCGG | 2 cut(s) | 160, 257 |
| HhaI | GCGC | 1 cut(s) | 223 |
| Hin1I | GRCGYC | 1 cut(s) | 221 |
| Hin1II | CATG | 1 cut(s) | 140 |
| Hin6I | GCGC | 1 cut(s) | 221 |
| HinP1I | GCGC | 1 cut(s) | 221 |
| HinfI | GANTC | 3 cut(s) | 59, 284, 294 |
| HpaII | CCGG | 2 cut(s) | 160, 257 |
| HphI | GGTGA | 1 cut(s) | 254 |
| Hpy166II | GTNNAC | 2 cut(s) | 14, 245 |
| Hpy188I | TCNGA | 1 cut(s) | 103 |
| Hpy188III | TCNNGA | 2 cut(s) | 15, 281 |
| Hpy8I | GTNNAC | 2 cut(s) | 14, 245 |
| Hpy99I | CGWCG | 1 cut(s) | 339 |
| HpyAV | CCTTC | 1 cut(s) | 329 |
| HpyCH4III | ACNGT | 2 cut(s) | 179, 339 |
| HpyCH4V | TGCA | 2 cut(s) | 65, 232 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 62, 85, 229 |
| HpyF3I | CTNAG | 1 cut(s) | 288 |
| Hsp92I | GRCGYC | 1 cut(s) | 221 |
| Hsp92II | CATG | 1 cut(s) | 140 |
| HspAI | GCGC | 1 cut(s) | 221 |
| KasI | GGCGCC | 1 cut(s) | 220 |
| KroI | GCCGGC | 1 cut(s) | 256 |
| KroNI | GCCGGC | 1 cut(s) | 258 |
| Kzo9I | GATC | 2 cut(s) | 277, 357 |
| LmnI | GCTCC | 2 cut(s) | 264, 272 |
| LpnPI | CCDG | 6 cut(s) | 36, 173, 225, 246, 270, 293 |
| Lsp1109I | GCAGC | 1 cut(s) | 216 |
| MaeIII | GTNAC | 1 cut(s) | 38 |
| MalI | GATC | 2 cut(s) | 279, 359 |
| MboI | GATC | 2 cut(s) | 277, 357 |
| MhlI | GDGCHC | 1 cut(s) | 269 |
| MlsI | TGGCCA | 1 cut(s) | 135 |
| MluCI | AATT | 1 cut(s) | 81 |
| MluNI | TGGCCA | 1 cut(s) | 135 |
| Mly113I | GGCGCC | 1 cut(s) | 221 |
| MnlI | CCTC | 4 cut(s) | 11, 161, 211, 219 |
| Mox20I | TGGCCA | 1 cut(s) | 135 |
| MroNI | GCCGGC | 1 cut(s) | 256 |
| MscI | TGGCCA | 1 cut(s) | 135 |
| Msp20I | TGGCCA | 1 cut(s) | 135 |
| MspA1I | CMGCKG | 1 cut(s) | 50 |
| MspI | CCGG | 2 cut(s) | 160, 257 |
| MspR9I | CCNGG | 1 cut(s) | 161 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 62, 85, 229 |
| NaeI | GCCGGC | 1 cut(s) | 258 |
| NarI | GGCGCC | 1 cut(s) | 221 |
| NciI | CCSGG | 1 cut(s) | 161 |
| NdeII | GATC | 2 cut(s) | 277, 357 |
| NgoMIV | GCCGGC | 1 cut(s) | 256 |
| NlaIII | CATG | 1 cut(s) | 140 |
| NlaIV | GGNNCC | 4 cut(s) | 55, 172, 222, 317 |
| NmeAIII | GCCGAG | 1 cut(s) | 249 |
| PaqCI | CACCTGC | 1 cut(s) | 230 |
| PdiI | GCCGGC | 1 cut(s) | 258 |
| PfeI | GAWTC | 3 cut(s) | 59, 284, 294 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 118 |
| PkrI | GCNGC | 3 cut(s) | 8, 231, 255 |
| PluTI | GGCGCC | 1 cut(s) | 224 |
| PpuMI | RGGWCCY | 2 cut(s) | 171, 316 |
| Psp124BI | GAGCTC | 1 cut(s) | 269 |
| Psp5II | RGGWCCY | 2 cut(s) | 171, 316 |
| PspN4I | GGNNCC | 4 cut(s) | 55, 172, 222, 317 |
| PspPI | GGNCC | 2 cut(s) | 171, 316 |
| PspPPI | RGGWCCY | 2 cut(s) | 171, 316 |
| RsaI | GTAC | 1 cut(s) | 348 |
| RsaNI | GTAC | 1 cut(s) | 347 |
| SacI | GAGCTC | 1 cut(s) | 269 |
| SatI | GCNGC | 3 cut(s) | 7, 230, 254 |
| Sau3AI | GATC | 2 cut(s) | 277, 357 |
| Sau96I | GGNCC | 2 cut(s) | 171, 316 |
| ScrFI | CCNGG | 1 cut(s) | 161 |
| SduI | GDGCHC | 1 cut(s) | 269 |
| SetI | ASST | 4 cut(s) | 244, 269, 277, 321 |
| SfoI | GGCGCC | 1 cut(s) | 222 |
| SinI | GGWCC | 2 cut(s) | 171, 316 |
| SmlI | CTYRAG | 1 cut(s) | 248 |
| SmoI | CTYRAG | 1 cut(s) | 248 |
| Sse9I | AATT | 1 cut(s) | 81 |
| SsiI | CCGC | 7 cut(s) | 29, 48, 122, 152, 183, 254, 311 |
| SspDI | GGCGCC | 1 cut(s) | 220 |
| SstI | GAGCTC | 1 cut(s) | 269 |
| StyD4I | CCNGG | 1 cut(s) | 159 |
| StyI | CCWWGG | 1 cut(s) | 32 |
| TaaI | ACNGT | 2 cut(s) | 179, 339 |
| TaqI | TCGA | 2 cut(s) | 280, 360 |
| TasI | AATT | 1 cut(s) | 81 |
| TauI | GCSGC | 1 cut(s) | 256 |
| TfiI | GAWTC | 3 cut(s) | 59, 284, 294 |
| TseI | GCWGC | 2 cut(s) | 6, 229 |
| TspDTI | ATGAA | 1 cut(s) | 153 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 118 |
| VpaK11BI | GGWCC | 2 cut(s) | 171, 316 |
| XapI | RAATTY | 1 cut(s) | 81 |