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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 212, 248 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 258 |
| AccBSI | CCGCTC | 1 cut(s) | 372 |
| AccII | CGCG | 1 cut(s) | 29 |
| AclWI | GGATC | 1 cut(s) | 43 |
| AcoI | YGGCCR | 1 cut(s) | 352 |
| AcuI | CTGAAG | 2 cut(s) | 38, 477 |
| AcyI | GRCGYC | 1 cut(s) | 249 |
| AfaI | GTAC | 2 cut(s) | 179, 319 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 12, 13, 58, 139, 258 |
| AgsI | TTSAA | 2 cut(s) | 155, 362 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 387 |
| AjnI | CCWGG | 1 cut(s) | 349 |
| AluBI | AGCT | 4 cut(s) | 94, 221, 269, 302 |
| AluI | AGCT | 4 cut(s) | 94, 221, 269, 302 |
| Alw26I | GTCTC | 1 cut(s) | 374 |
| AlwI | GGATC | 1 cut(s) | 43 |
| Ama87I | CYCGRG | 1 cut(s) | 399 |
| AoxI | GGCC | 4 cut(s) | 130, 207, 352, 438 |
| AspLEI | GCGC | 1 cut(s) | 251 |
| AspS9I | GGNCC | 1 cut(s) | 16 |
| AsuC2I | CCSGG | 1 cut(s) | 20 |
| AsuHPI | GGTGA | 2 cut(s) | 34, 113 |
| AvaI | CYCGRG | 1 cut(s) | 399 |
| AvaII | GGWCC | 1 cut(s) | 16 |
| BalI | TGGCCA | 1 cut(s) | 354 |
| BanI | GGYRCC | 2 cut(s) | 212, 248 |
| BanII | GRGCYC | 1 cut(s) | 370 |
| BbvCI | CCTCAGC | 1 cut(s) | 123 |
| BccI | CCATC | 3 cut(s) | 260, 298, 435 |
| BceAI | ACGGC | 2 cut(s) | 117, 405 |
| BciT130I | CCWGG | 1 cut(s) | 351 |
| BcnI | CCSGG | 1 cut(s) | 20 |
| BcoDI | GTCTC | 1 cut(s) | 374 |
| BfmI | CTRYAG | 1 cut(s) | 236 |
| BfoI | RGCGCY | 1 cut(s) | 252 |
| Bme1390I | CCNGG | 2 cut(s) | 20, 351 |
| Bme18I | GGWCC | 1 cut(s) | 16 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 387 |
| BmeT110I | CYCGRG | 1 cut(s) | 399 |
| BmgT120I | GGNCC | 1 cut(s) | 16 |
| BmiI | GGNNCC | 5 cut(s) | 17, 214, 250, 367, 469 |
| BmrFI | CCNGG | 2 cut(s) | 20, 351 |
| BmrI | ACTGGG | 2 cut(s) | 268, 381 |
| BmsI | GCATC | 3 cut(s) | 222, 264, 442 |
| BmuI | ACTGGG | 2 cut(s) | 268, 381 |
| BpmI | CTGGAG | 1 cut(s) | 116 |
| Bpu10I | CCTNAGC | 2 cut(s) | 123, 217 |
| BpuMI | CCSGG | 1 cut(s) | 20 |
| BsaHI | GRCGYC | 1 cut(s) | 249 |
| BsaI | GGTCTC | 1 cut(s) | 374 |
| BsaJI | CCNNGG | 4 cut(s) | 195, 294, 349, 400 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 12, 13, 58, 139, 258 |
| Bse118I | RCCGGY | 2 cut(s) | 209, 277 |
| Bse1I | ACTGG | 3 cut(s) | 263, 315, 387 |
| Bse3DI | GCAATG | 1 cut(s) | 474 |
| BseBI | CCWGG | 1 cut(s) | 351 |
| BseDI | CCNNGG | 4 cut(s) | 195, 294, 349, 400 |
| BseGI | GGATG | 2 cut(s) | 290, 427 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 12, 13, 58, 139, 258 |
| BseMI | GCAATG | 1 cut(s) | 474 |
| BseMII | CTCAG | 1 cut(s) | 114 |
| BseNI | ACTGG | 3 cut(s) | 263, 315, 387 |
| BsgI | GTGCAG | 1 cut(s) | 305 |
| Bsh1236I | CGCG | 1 cut(s) | 29 |
| Bsh1285I | CGRYCG | 1 cut(s) | 282 |
| BshFI | GGCC | 4 cut(s) | 132, 209, 354, 440 |
| BshNI | GGYRCC | 2 cut(s) | 212, 248 |
| BsiEI | CGRYCG | 1 cut(s) | 282 |
| BsiHKCI | CYCGRG | 1 cut(s) | 399 |
| BsiSI | CCGG | 3 cut(s) | 19, 210, 278 |
| BslFI | GGGAC | 2 cut(s) | 29, 375 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 12, 13, 58, 139, 258 |
| BsmAI | GTCTC | 1 cut(s) | 374 |
| BsmFI | GGGAC | 2 cut(s) | 29, 375 |
| BsnI | GGCC | 4 cut(s) | 132, 209, 354, 440 |
| Bso31I | GGTCTC | 1 cut(s) | 374 |
| BsoBI | CYCGRG | 1 cut(s) | 399 |
| Bsp1286I | GDGCHC | 1 cut(s) | 370 |
| Bsp143I | GATC | 2 cut(s) | 48, 84 |
| BspANI | GGCC | 4 cut(s) | 132, 209, 354, 440 |
| BspCNI | CTCAG | 1 cut(s) | 115 |
| BspFNI | CGCG | 1 cut(s) | 29 |
| BspLI | GGNNCC | 5 cut(s) | 17, 214, 250, 367, 469 |
| BspMAI | CTGCAG | 1 cut(s) | 240 |
| BspPI | GGATC | 1 cut(s) | 43 |
| BspT107I | GGYRCC | 2 cut(s) | 212, 248 |
| BspTNI | GGTCTC | 1 cut(s) | 374 |
| BsrBI | CCGCTC | 1 cut(s) | 372 |
| BsrDI | GCAATG | 1 cut(s) | 474 |
| BsrFI | RCCGGY | 2 cut(s) | 209, 277 |
| BsrI | ACTGG | 3 cut(s) | 263, 315, 387 |
| BssAI | RCCGGY | 2 cut(s) | 209, 277 |
| BssECI | CCNNGG | 4 cut(s) | 195, 294, 349, 400 |
| BssMI | GATC | 2 cut(s) | 48, 84 |
| BssNI | GRCGYC | 1 cut(s) | 249 |
| BssT1I | CCWWGG | 1 cut(s) | 294 |
| Bst2UI | CCWGG | 1 cut(s) | 351 |
| BstACI | GRCGYC | 1 cut(s) | 249 |
| BstC8I | GCNNGC | 4 cut(s) | 112, 370, 438, 445 |
| BstDEI | CTNAG | 2 cut(s) | 123, 217 |
| BstEII | GGTNACC | 1 cut(s) | 22 |
| BstF5I | GGATG | 2 cut(s) | 290, 427 |
| BstFNI | CGCG | 1 cut(s) | 29 |
| BstH2I | RGCGCY | 1 cut(s) | 252 |
| BstHHI | GCGC | 1 cut(s) | 251 |
| BstKTI | GATC | 2 cut(s) | 51, 87 |
| BstMAI | GTCTC | 1 cut(s) | 374 |
| BstMBI | GATC | 2 cut(s) | 48, 84 |
| BstMCI | CGRYCG | 1 cut(s) | 282 |
| BstNI | CCWGG | 1 cut(s) | 351 |
| BstPI | GGTNACC | 1 cut(s) | 22 |
| BstSCI | CCNGG | 2 cut(s) | 18, 349 |
| BstSFI | CTRYAG | 1 cut(s) | 236 |
| BstUI | CGCG | 1 cut(s) | 29 |
| BstX2I | RGATCY | 1 cut(s) | 48 |
| BstYI | RGATCY | 1 cut(s) | 48 |
| BsuRI | GGCC | 4 cut(s) | 132, 209, 354, 440 |
| BtsCI | GGATG | 2 cut(s) | 290, 427 |
| BtsI | GCAGTG | 1 cut(s) | 327 |
| BtsIMutI | CAGTG | 2 cut(s) | 188, 327 |
| Cac8I | GCNNGC | 4 cut(s) | 112, 370, 438, 445 |
| CfoI | GCGC | 1 cut(s) | 251 |
| Cfr10I | RCCGGY | 2 cut(s) | 209, 277 |
| Cfr13I | GGNCC | 1 cut(s) | 16 |
| Csp6I | GTAC | 2 cut(s) | 178, 318 |
| CviQI | GTAC | 2 cut(s) | 178, 318 |
| DdeI | CTNAG | 2 cut(s) | 123, 217 |
| DinI | GGCGCC | 1 cut(s) | 250 |
| DpnI | GATC | 2 cut(s) | 50, 86 |
| DpnII | GATC | 2 cut(s) | 48, 84 |
| DriI | GACNNNNNGTC | 1 cut(s) | 387 |
| EaeI | YGGCCR | 1 cut(s) | 352 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 387 |
| EciI | GGCGGA | 3 cut(s) | 188, 294, 475 |
| Eco130I | CCWWGG | 1 cut(s) | 294 |
| Eco24I | GRGCYC | 1 cut(s) | 370 |
| Eco31I | GGTCTC | 1 cut(s) | 374 |
| Eco47I | GGWCC | 1 cut(s) | 16 |
| Eco57I | CTGAAG | 2 cut(s) | 38, 477 |
| Eco88I | CYCGRG | 1 cut(s) | 399 |
| Eco91I | GGTNACC | 1 cut(s) | 22 |
| EcoO65I | GGTNACC | 1 cut(s) | 22 |
| EcoRII | CCWGG | 1 cut(s) | 349 |
| EcoT14I | CCWWGG | 1 cut(s) | 294 |
| EcoT38I | GRGCYC | 1 cut(s) | 370 |
| EgeI | GGCGCC | 1 cut(s) | 250 |
| EheI | GGCGCC | 1 cut(s) | 250 |
| ErhI | CCWWGG | 1 cut(s) | 294 |
| FaiI | YATR | 3 cut(s) | 160, 162, 227 |
| FaqI | GGGAC | 2 cut(s) | 29, 375 |
| FauI | CCCGC | 3 cut(s) | 6, 51, 377 |
| FokI | GGATG | 2 cut(s) | 277, 414 |
| FriOI | GRGCYC | 1 cut(s) | 370 |
| GlaI | GCGC | 1 cut(s) | 250 |
| GsuI | CTGGAG | 1 cut(s) | 116 |
| HaeII | RGCGCY | 1 cut(s) | 252 |
| HaeIII | GGCC | 4 cut(s) | 132, 209, 354, 440 |
| HapII | CCGG | 3 cut(s) | 19, 210, 278 |
| HhaI | GCGC | 1 cut(s) | 251 |
| Hin1I | GRCGYC | 1 cut(s) | 249 |
| Hin6I | GCGC | 1 cut(s) | 249 |
| HinP1I | GCGC | 1 cut(s) | 249 |
| HindIII | AAGCTT | 1 cut(s) | 267 |
| HinfI | GANTC | 2 cut(s) | 62, 155 |
| HpaII | CCGG | 3 cut(s) | 19, 210, 278 |
| HphI | GGTGA | 2 cut(s) | 34, 113 |
| Hpy188I | TCNGA | 1 cut(s) | 409 |
| HpyAV | CCTTC | 6 cut(s) | 25, 62, 178, 199, 356, 452 |
| HpyCH4V | TGCA | 2 cut(s) | 238, 286 |
| HpyF3I | CTNAG | 2 cut(s) | 123, 217 |
| Hsp92I | GRCGYC | 1 cut(s) | 249 |
| HspAI | GCGC | 1 cut(s) | 249 |
| KasI | GGCGCC | 1 cut(s) | 248 |
| Kzo9I | GATC | 2 cut(s) | 48, 84 |
| LmnI | GCTCC | 3 cut(s) | 307, 365, 467 |
| LweI | GCATC | 3 cut(s) | 222, 264, 442 |
| MaeIII | GTNAC | 1 cut(s) | 22 |
| MalI | GATC | 2 cut(s) | 50, 86 |
| MbiI | CCGCTC | 1 cut(s) | 372 |
| MboI | GATC | 2 cut(s) | 48, 84 |
| MboII | GAAGA | 1 cut(s) | 49 |
| MflI | RGATCY | 1 cut(s) | 48 |
| MhlI | GDGCHC | 1 cut(s) | 370 |
| MlsI | TGGCCA | 1 cut(s) | 354 |
| MluNI | TGGCCA | 1 cut(s) | 354 |
| Mly113I | GGCGCC | 1 cut(s) | 249 |
| MlyI | GAGTC | 1 cut(s) | 71 |
| MnlI | CCTC | 7 cut(s) | 91, 112, 118, 122, 190, 355, 395 |
| Mox20I | TGGCCA | 1 cut(s) | 354 |
| MscI | TGGCCA | 1 cut(s) | 354 |
| Msp20I | TGGCCA | 1 cut(s) | 354 |
| MspA1I | CMGCKG | 5 cut(s) | 58, 94, 149, 323, 447 |
| MspI | CCGG | 3 cut(s) | 19, 210, 278 |
| MspR9I | CCNGG | 2 cut(s) | 20, 351 |
| MvaI | CCWGG | 1 cut(s) | 351 |
| MvnI | CGCG | 1 cut(s) | 29 |
| NarI | GGCGCC | 1 cut(s) | 249 |
| NciI | CCSGG | 1 cut(s) | 20 |
| NdeII | GATC | 2 cut(s) | 48, 84 |
| NlaIV | GGNNCC | 5 cut(s) | 17, 214, 250, 367, 469 |
| NmuCI | GTSAC | 1 cut(s) | 22 |
| PfeI | GAWTC | 1 cut(s) | 155 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 258 |
| PleI | GAGTC | 1 cut(s) | 70 |
| PluTI | GGCGCC | 1 cut(s) | 252 |
| PpsI | GAGTC | 1 cut(s) | 70 |
| Psp6I | CCWGG | 1 cut(s) | 349 |
| PspEI | GGTNACC | 1 cut(s) | 22 |
| PspGI | CCWGG | 1 cut(s) | 349 |
| PspN4I | GGNNCC | 5 cut(s) | 17, 214, 250, 367, 469 |
| PspPI | GGNCC | 1 cut(s) | 16 |
| PstI | CTGCAG | 1 cut(s) | 240 |
| PsuI | RGATCY | 1 cut(s) | 48 |
| PvuII | CAGCTG | 1 cut(s) | 94 |
| RsaI | GTAC | 2 cut(s) | 179, 319 |
| RsaNI | GTAC | 2 cut(s) | 178, 318 |
| Sau3AI | GATC | 2 cut(s) | 48, 84 |
| Sau96I | GGNCC | 1 cut(s) | 16 |
| SchI | GAGTC | 1 cut(s) | 71 |
| ScrFI | CCNGG | 2 cut(s) | 20, 351 |
| SduI | GDGCHC | 1 cut(s) | 370 |
| SetI | ASST | 5 cut(s) | 96, 223, 271, 304, 463 |
| SfaNI | GCATC | 3 cut(s) | 222, 264, 442 |
| SfcI | CTRYAG | 1 cut(s) | 236 |
| SfoI | GGCGCC | 1 cut(s) | 250 |
| SinI | GGWCC | 1 cut(s) | 16 |
| SspDI | GGCGCC | 1 cut(s) | 248 |
| StyD4I | CCNGG | 2 cut(s) | 18, 349 |
| StyI | CCWWGG | 1 cut(s) | 294 |
| TaqI | TCGA | 2 cut(s) | 255, 272 |
| TaqII | GACCGA | 1 cut(s) | 209 |
| TatI | WGTACW | 1 cut(s) | 177 |
| TauI | GCSGC | 3 cut(s) | 143, 149, 443 |
| TfiI | GAWTC | 1 cut(s) | 155 |
| TscAI | CASTG | 2 cut(s) | 195, 334 |
| TseFI | GTSAC | 1 cut(s) | 22 |
| Tsp45I | GTSAC | 1 cut(s) | 22 |
| TspRI | CASTG | 2 cut(s) | 195, 334 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 258 |
| VpaK11BI | GGWCC | 1 cut(s) | 16 |