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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 777, 1401 |
| Acc65I | GGTACC | 1 cut(s) | 1190 |
| AccB1I | GGYRCC | 3 cut(s) | 436, 1097, 1190 |
| AccBSI | CCGCTC | 5 cut(s) | 184, 499, 526, 868, 1197 |
| AccI | GTMKAC | 1 cut(s) | 382 |
| AccII | CGCG | 5 cut(s) | 559, 780, 805, 828, 1342 |
| AclWI | GGATC | 1 cut(s) | 878 |
| AcoI | YGGCCR | 6 cut(s) | 138, 323, 747, 795, 990, 1351 |
| AcuI | CTGAAG | 3 cut(s) | 951, 993, 1106 |
| AcvI | CACGTG | 1 cut(s) | 1277 |
| AcyI | GRCGYC | 5 cut(s) | 437, 641, 774, 1098, 1398 |
| AfaI | GTAC | 3 cut(s) | 982, 1150, 1192 |
| AflIII | ACRYGT | 1 cut(s) | 826 |
| AgsI | TTSAA | 4 cut(s) | 332, 1004, 1012, 1388 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1329 |
| AjnI | CCWGG | 1 cut(s) | 1287 |
| AleI | CACNNNNGTG | 1 cut(s) | 201 |
| AluBI | AGCT | 7 cut(s) | 404, 454, 591, 670, 787, 1142, 1184 |
| AluI | AGCT | 7 cut(s) | 404, 454, 591, 670, 787, 1142, 1184 |
| Alw21I | GWGCWC | 1 cut(s) | 672 |
| Alw26I | GTCTC | 6 cut(s) | 26, 695, 835, 842, 1154, 1316 |
| AlwI | GGATC | 1 cut(s) | 878 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 19, 655 |
| Ama87I | CYCGRG | 4 cut(s) | 29, 1065, 1198, 1302 |
| ApaI | GGGCCC | 2 cut(s) | 379, 1066 |
| ApeKI | GCWGC | 5 cut(s) | 70, 649, 859, 904, 986 |
| Asp718I | GGTACC | 1 cut(s) | 1190 |
| AspLEI | GCGC | 8 cut(s) | 43, 307, 439, 561, 1100, 1220, 1297, 1342 |
| AsuC2I | CCSGG | 4 cut(s) | 292, 674, 1303, 1304 |
| AsuHPI | GGTGA | 6 cut(s) | 34, 110, 286, 379, 506, 962 |
| AvaI | CYCGRG | 4 cut(s) | 29, 1065, 1198, 1302 |
| AvaII | GGWCC | 5 cut(s) | 129, 206, 282, 1236, 1347 |
| AxyI | CCTNAGG | 1 cut(s) | 965 |
| BaeGI | GKGCMC | 2 cut(s) | 379, 1066 |
| BalI | TGGCCA | 2 cut(s) | 749, 797 |
| BanI | GGYRCC | 3 cut(s) | 436, 1097, 1190 |
| BanII | GRGCYC | 3 cut(s) | 379, 672, 1066 |
| BbrPI | CACGTG | 1 cut(s) | 1277 |
| BbsI | GAAGAC | 1 cut(s) | 1040 |
| Bbv12I | GWGCWC | 1 cut(s) | 672 |
| BbvI | GCAGC | 5 cut(s) | 57, 661, 846, 916, 973 |
| BccI | CCATC | 7 cut(s) | 98, 99, 485, 522, 806, 919, 1304 |
| BceAI | ACGGC | 6 cut(s) | 153, 428, 568, 582, 755, 1363 |
| BciT130I | CCWGG | 1 cut(s) | 1289 |
| BcnI | CCSGG | 4 cut(s) | 292, 674, 1303, 1304 |
| BcoDI | GTCTC | 6 cut(s) | 26, 695, 835, 842, 1154, 1316 |
| BfmI | CTRYAG | 1 cut(s) | 860 |
| BfoI | RGCGCY | 4 cut(s) | 44, 308, 440, 1101 |
| BlpI | GCTNAGC | 1 cut(s) | 44 |
| Bme1390I | CCNGG | 5 cut(s) | 292, 674, 1289, 1303, 1304 |
| Bme18I | GGWCC | 5 cut(s) | 129, 206, 282, 1236, 1347 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1329 |
| BmeT110I | CYCGRG | 4 cut(s) | 29, 1065, 1198, 1302 |
| BmrFI | CCNGG | 5 cut(s) | 292, 674, 1289, 1303, 1304 |
| BmrI | ACTGGG | 1 cut(s) | 1323 |
| BmsI | GCATC | 2 cut(s) | 66, 177 |
| BmuI | ACTGGG | 1 cut(s) | 1323 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1166 |
| BpiI | GAAGAC | 1 cut(s) | 1040 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 443, 475 |
| BpmI | CTGGAG | 4 cut(s) | 329, 677, 1206, 1310 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 44 |
| BpuMI | CCSGG | 4 cut(s) | 292, 674, 1303, 1304 |
| Bsa29I | ATCGAT | 1 cut(s) | 1367 |
| BsaAI | YACGTR | 1 cut(s) | 1277 |
| BsaHI | GRCGYC | 5 cut(s) | 437, 641, 774, 1098, 1398 |
| BsaI | GGTCTC | 3 cut(s) | 695, 842, 1316 |
| BsaJI | CCNNGG | 8 cut(s) | 54, 685, 750, 778, 879, 1044, 1302, 1402 |
| BsaWI | WCCGGW | 1 cut(s) | 61 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 345, 375 |
| Bse118I | RCCGGY | 4 cut(s) | 140, 229, 321, 325 |
| Bse1I | ACTGG | 4 cut(s) | 49, 266, 729, 1329 |
| Bse21I | CCTNAGG | 1 cut(s) | 965 |
| BseBI | CCWGG | 1 cut(s) | 1289 |
| BseCI | ATCGAT | 1 cut(s) | 1367 |
| BseDI | CCNNGG | 8 cut(s) | 54, 685, 750, 778, 879, 1044, 1302, 1402 |
| BseGI | GGATG | 5 cut(s) | 192, 244, 930, 1222, 1315 |
| BseMII | CTCAG | 3 cut(s) | 35, 956, 1134 |
| BseNI | ACTGG | 4 cut(s) | 49, 266, 729, 1329 |
| BseRI | GAGGAG | 3 cut(s) | 161, 272, 371 |
| BseSI | GKGCMC | 2 cut(s) | 379, 1066 |
| BseX3I | CGGCCG | 3 cut(s) | 138, 323, 990 |
| BseXI | GCAGC | 5 cut(s) | 57, 661, 846, 916, 973 |
| BseYI | CCCAGC | 7 cut(s) | 9, 167, 529, 943, 1058, 1180, 1239 |
| BsgI | GTGCAG | 2 cut(s) | 140, 923 |
| Bsh1236I | CGCG | 5 cut(s) | 559, 780, 805, 828, 1342 |
| Bsh1285I | CGRYCG | 5 cut(s) | 141, 326, 993, 1367, 1371 |
| BshNI | GGYRCC | 3 cut(s) | 436, 1097, 1190 |
| BshVI | ATCGAT | 1 cut(s) | 1367 |
| BsiEI | CGRYCG | 5 cut(s) | 141, 326, 993, 1367, 1371 |
| BsiHKAI | GWGCWC | 1 cut(s) | 672 |
| BsiHKCI | CYCGRG | 4 cut(s) | 29, 1065, 1198, 1302 |
| BslFI | GGGAC | 3 cut(s) | 142, 821, 1222 |
| BsmAI | GTCTC | 6 cut(s) | 26, 695, 835, 842, 1154, 1316 |
| BsmBI | CGTCTC | 2 cut(s) | 26, 835 |
| BsmFI | GGGAC | 3 cut(s) | 142, 821, 1222 |
| BsmI | GAATGC | 1 cut(s) | 1007 |
| Bso31I | GGTCTC | 3 cut(s) | 695, 842, 1316 |
| BsoBI | CYCGRG | 4 cut(s) | 29, 1065, 1198, 1302 |
| Bsp120I | GGGCCC | 2 cut(s) | 375, 1062 |
| Bsp1286I | GDGCHC | 3 cut(s) | 379, 672, 1066 |
| Bsp143I | GATC | 4 cut(s) | 369, 870, 1364, 1368 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 44 |
| BspCNI | CTCAG | 3 cut(s) | 36, 957, 1135 |
| BspDI | ATCGAT | 1 cut(s) | 1367 |
| BspFNI | CGCG | 5 cut(s) | 559, 780, 805, 828, 1342 |
| BspMAI | CTGCAG | 1 cut(s) | 864 |
| BspPI | GGATC | 1 cut(s) | 878 |
| BspT107I | GGYRCC | 3 cut(s) | 436, 1097, 1190 |
| BspTNI | GGTCTC | 3 cut(s) | 695, 842, 1316 |
| BsrBI | CCGCTC | 5 cut(s) | 184, 499, 526, 868, 1197 |
| BsrFI | RCCGGY | 4 cut(s) | 140, 229, 321, 325 |
| BsrI | ACTGG | 4 cut(s) | 49, 266, 729, 1329 |
| BssAI | RCCGGY | 4 cut(s) | 140, 229, 321, 325 |
| BssECI | CCNNGG | 8 cut(s) | 54, 685, 750, 778, 879, 1044, 1302, 1402 |
| BssMI | GATC | 4 cut(s) | 369, 870, 1364, 1368 |
| BssNI | GRCGYC | 5 cut(s) | 437, 641, 774, 1098, 1398 |
| BssT1I | CCWWGG | 5 cut(s) | 685, 750, 879, 1044, 1402 |
| Bst2UI | CCWGG | 1 cut(s) | 1289 |
| Bst4CI | ACNGT | 3 cut(s) | 118, 418, 480 |
| Bst6I | CTCTTC | 2 cut(s) | 342, 515 |
| BstACI | GRCGYC | 5 cut(s) | 437, 641, 774, 1098, 1398 |
| BstBAI | YACGTR | 1 cut(s) | 1277 |
| BstDEI | CTNAG | 3 cut(s) | 44, 965, 1143 |
| BstDSI | CCRYGG | 1 cut(s) | 778 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 659, 860 |
| BstF5I | GGATG | 5 cut(s) | 192, 244, 930, 1222, 1315 |
| BstFNI | CGCG | 5 cut(s) | 559, 780, 805, 828, 1342 |
| BstH2I | RGCGCY | 4 cut(s) | 44, 308, 440, 1101 |
| BstHHI | GCGC | 8 cut(s) | 43, 307, 439, 561, 1100, 1220, 1297, 1342 |
| BstKTI | GATC | 4 cut(s) | 372, 873, 1367, 1371 |
| BstMAI | GTCTC | 6 cut(s) | 26, 695, 835, 842, 1154, 1316 |
| BstMBI | GATC | 4 cut(s) | 369, 870, 1364, 1368 |
| BstMCI | CGRYCG | 5 cut(s) | 141, 326, 993, 1367, 1371 |
| BstNI | CCWGG | 1 cut(s) | 1289 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1166 |
| BstSCI | CCNGG | 5 cut(s) | 290, 672, 1287, 1301, 1302 |
| BstSFI | CTRYAG | 1 cut(s) | 860 |
| BstSLI | GKGCMC | 2 cut(s) | 379, 1066 |
| BstUI | CGCG | 5 cut(s) | 559, 780, 805, 828, 1342 |
| BstV1I | GCAGC | 5 cut(s) | 57, 661, 846, 916, 973 |
| BstV2I | GAAGAC | 1 cut(s) | 1040 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 203 |
| BstZI | CGGCCG | 3 cut(s) | 138, 323, 990 |
| Bsu15I | ATCGAT | 1 cut(s) | 1367 |
| Bsu36I | CCTNAGG | 1 cut(s) | 965 |
| BsuTUI | ATCGAT | 1 cut(s) | 1367 |
| BtgI | CCRYGG | 1 cut(s) | 778 |
| BtsCI | GGATG | 5 cut(s) | 192, 244, 930, 1222, 1315 |
| BtsIMutI | CAGTG | 2 cut(s) | 273, 454 |
| CaiI | CAGNNNCTG | 2 cut(s) | 19, 655 |
| CciNI | GCGGCCGC | 1 cut(s) | 990 |
| CfoI | GCGC | 8 cut(s) | 43, 307, 439, 561, 1100, 1220, 1297, 1342 |
| Cfr10I | RCCGGY | 4 cut(s) | 140, 229, 321, 325 |
| Cfr42I | CCGCGG | 1 cut(s) | 781 |
| Cfr9I | CCCGGG | 1 cut(s) | 1302 |
| ClaI | ATCGAT | 1 cut(s) | 1367 |
| CseI | GACGC | 5 cut(s) | 25, 630, 817, 1045, 1139 |
| Csp6I | GTAC | 3 cut(s) | 981, 1149, 1191 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 399, 434 |
| CviAII | CATG | 1 cut(s) | 623 |
| CviQI | GTAC | 3 cut(s) | 981, 1149, 1191 |
| DdeI | CTNAG | 3 cut(s) | 44, 965, 1143 |
| DinI | GGCGCC | 2 cut(s) | 438, 1099 |
| DpnI | GATC | 4 cut(s) | 371, 872, 1366, 1370 |
| DpnII | GATC | 4 cut(s) | 369, 870, 1364, 1368 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1329 |
| EaeI | YGGCCR | 6 cut(s) | 138, 323, 747, 795, 990, 1351 |
| EagI | CGGCCG | 3 cut(s) | 138, 323, 990 |
| Eam1104I | CTCTTC | 2 cut(s) | 342, 515 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1329 |
| EarI | CTCTTC | 2 cut(s) | 342, 515 |
| EciI | GGCGGA | 6 cut(s) | 248, 722, 743, 770, 1037, 1322 |
| Ecl136II | GAGCTC | 1 cut(s) | 670 |
| EclXI | CGGCCG | 3 cut(s) | 138, 323, 990 |
| Eco130I | CCWWGG | 5 cut(s) | 685, 750, 879, 1044, 1402 |
| Eco24I | GRGCYC | 3 cut(s) | 379, 672, 1066 |
| Eco31I | GGTCTC | 3 cut(s) | 695, 842, 1316 |
| Eco47I | GGWCC | 5 cut(s) | 129, 206, 282, 1236, 1347 |
| Eco52I | CGGCCG | 3 cut(s) | 138, 323, 990 |
| Eco53kI | GAGCTC | 1 cut(s) | 670 |
| Eco57I | CTGAAG | 3 cut(s) | 951, 993, 1106 |
| Eco72I | CACGTG | 1 cut(s) | 1277 |
| Eco81I | CCTNAGG | 1 cut(s) | 965 |
| Eco88I | CYCGRG | 4 cut(s) | 29, 1065, 1198, 1302 |
| EcoICRI | GAGCTC | 1 cut(s) | 670 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 659, 860 |
| EcoO109I | RGGNCCY | 4 cut(s) | 129, 375, 1062, 1236 |
| EcoRII | CCWGG | 1 cut(s) | 1287 |
| EcoT14I | CCWWGG | 5 cut(s) | 685, 750, 879, 1044, 1402 |
| EcoT38I | GRGCYC | 3 cut(s) | 379, 672, 1066 |
| EgeI | GGCGCC | 2 cut(s) | 438, 1099 |
| EheI | GGCGCC | 2 cut(s) | 438, 1099 |
| ErhI | CCWWGG | 5 cut(s) | 685, 750, 879, 1044, 1402 |
| Esp3I | CGTCTC | 2 cut(s) | 26, 835 |
| FaeI | CATG | 1 cut(s) | 626 |
| FaqI | GGGAC | 3 cut(s) | 142, 821, 1222 |
| FatI | CATG | 1 cut(s) | 622 |
| FauI | CCCGC | 9 cut(s) | 118, 448, 492, 541, 607, 798, 900, 1161, 1202 |
| FblI | GTMKAC | 1 cut(s) | 382 |
| FokI | GGATG | 5 cut(s) | 199, 251, 937, 1209, 1322 |
| FriOI | GRGCYC | 3 cut(s) | 379, 672, 1066 |
| GlaI | GCGC | 8 cut(s) | 42, 306, 438, 560, 1099, 1219, 1296, 1341 |
| GsaI | CCCAGC | 7 cut(s) | 13, 171, 533, 947, 1062, 1184, 1243 |
| GsuI | CTGGAG | 4 cut(s) | 329, 677, 1206, 1310 |
| HaeII | RGCGCY | 4 cut(s) | 44, 308, 440, 1101 |
| HgaI | GACGC | 5 cut(s) | 25, 630, 817, 1045, 1139 |
| HhaI | GCGC | 8 cut(s) | 43, 307, 439, 561, 1100, 1220, 1297, 1342 |
| Hin1I | GRCGYC | 5 cut(s) | 437, 641, 774, 1098, 1398 |
| Hin1II | CATG | 1 cut(s) | 626 |
| Hin6I | GCGC | 8 cut(s) | 41, 305, 437, 559, 1098, 1218, 1295, 1340 |
| HinP1I | GCGC | 8 cut(s) | 41, 305, 437, 559, 1098, 1218, 1295, 1340 |
| HincII | GTYRAC | 1 cut(s) | 383 |
| HindII | GTYRAC | 1 cut(s) | 383 |
| HinfI | GANTC | 6 cut(s) | 332, 458, 911, 1246, 1284, 1360 |
| HphI | GGTGA | 6 cut(s) | 34, 110, 286, 379, 506, 962 |
| Hpy166II | GTNNAC | 3 cut(s) | 25, 383, 427 |
| Hpy188I | TCNGA | 3 cut(s) | 55, 1267, 1335 |
| Hpy188III | TCNNGA | 2 cut(s) | 338, 694 |
| Hpy8I | GTNNAC | 3 cut(s) | 25, 383, 427 |
| Hpy99I | CGWCG | 5 cut(s) | 118, 384, 568, 646, 1267 |
| HpyAV | CCTTC | 6 cut(s) | 172, 385, 968, 1048, 1087, 1226 |
| HpyCH4III | ACNGT | 3 cut(s) | 118, 418, 480 |
| HpyCH4IV | ACGT | 5 cut(s) | 35, 774, 792, 1276, 1398 |
| HpyCH4V | TGCA | 6 cut(s) | 121, 226, 410, 476, 862, 904 |
| HpyF3I | CTNAG | 3 cut(s) | 44, 965, 1143 |
| HpySE526I | ACGT | 5 cut(s) | 35, 774, 792, 1276, 1398 |
| Hsp92I | GRCGYC | 5 cut(s) | 437, 641, 774, 1098, 1398 |
| Hsp92II | CATG | 1 cut(s) | 626 |
| HspAI | GCGC | 8 cut(s) | 41, 305, 437, 559, 1098, 1218, 1295, 1340 |
| KasI | GGCGCC | 2 cut(s) | 436, 1097 |
| KflI | GGGWCCC | 2 cut(s) | 129, 1236 |
| KpnI | GGTACC | 1 cut(s) | 1194 |
| KroI | GCCGGC | 2 cut(s) | 140, 321 |
| KroNI | GCCGGC | 2 cut(s) | 142, 323 |
| KspI | CCGCGG | 1 cut(s) | 781 |
| Kzo9I | GATC | 4 cut(s) | 369, 870, 1364, 1368 |
| LmnI | GCTCC | 7 cut(s) | 181, 259, 409, 667, 675, 841, 865 |
| Lsp1109I | GCAGC | 5 cut(s) | 57, 661, 846, 916, 973 |
| LweI | GCATC | 2 cut(s) | 66, 177 |
| MaeII | ACGT | 5 cut(s) | 35, 774, 792, 1276, 1398 |
| MaeIII | GTNAC | 6 cut(s) | 247, 274, 761, 1119, 1272, 1313 |
| MalI | GATC | 4 cut(s) | 371, 872, 1366, 1370 |
| MbiI | CCGCTC | 5 cut(s) | 184, 499, 526, 868, 1197 |
| MboI | GATC | 4 cut(s) | 369, 870, 1364, 1368 |
| MboII | GAAGA | 6 cut(s) | 113, 359, 400, 502, 689, 1045 |
| MfeI | CAATTG | 1 cut(s) | 570 |
| MhlI | GDGCHC | 3 cut(s) | 379, 672, 1066 |
| MlsI | TGGCCA | 2 cut(s) | 749, 797 |
| MluCI | AATT | 1 cut(s) | 570 |
| MluI | ACGCGT | 1 cut(s) | 826 |
| MluNI | TGGCCA | 2 cut(s) | 749, 797 |
| Mly113I | GGCGCC | 2 cut(s) | 437, 1098 |
| MlyI | GAGTC | 4 cut(s) | 452, 920, 1240, 1369 |
| MmeI | TCCRAC | 3 cut(s) | 819, 1245, 1250 |
| Mox20I | TGGCCA | 2 cut(s) | 749, 797 |
| MroNI | GCCGGC | 2 cut(s) | 140, 321 |
| MscI | TGGCCA | 2 cut(s) | 749, 797 |
| MseI | TTAA | 1 cut(s) | 1029 |
| MslI | CAYNNNNRTG | 3 cut(s) | 96, 201, 899 |
| Msp20I | TGGCCA | 2 cut(s) | 749, 797 |
| MspA1I | CMGCKG | 6 cut(s) | 780, 907, 986, 998, 1142, 1184 |
| MspR9I | CCNGG | 5 cut(s) | 292, 674, 1289, 1303, 1304 |
| MunI | CAATTG | 1 cut(s) | 570 |
| Mva1269I | GAATGC | 1 cut(s) | 1007 |
| MvaI | CCWGG | 1 cut(s) | 1289 |
| MvnI | CGCG | 5 cut(s) | 559, 780, 805, 828, 1342 |
| NaeI | GCCGGC | 2 cut(s) | 142, 323 |
| NarI | GGCGCC | 2 cut(s) | 437, 1098 |
| NciI | CCSGG | 4 cut(s) | 292, 674, 1303, 1304 |
| NdeII | GATC | 4 cut(s) | 369, 870, 1364, 1368 |
| NgoMIV | GCCGGC | 2 cut(s) | 140, 321 |
| NlaIII | CATG | 1 cut(s) | 626 |
| NmeAIII | GCCGAG | 1 cut(s) | 572 |
| NmuCI | GTSAC | 5 cut(s) | 247, 274, 761, 1119, 1272 |
| NotI | GCGGCCGC | 1 cut(s) | 990 |
| OliI | CACNNNNGTG | 1 cut(s) | 201 |
| PctI | GAATGC | 1 cut(s) | 1007 |
| PdiI | GCCGGC | 2 cut(s) | 142, 323 |
| PfeI | GAWTC | 2 cut(s) | 332, 1284 |
| PfoI | TCCNGGA | 2 cut(s) | 672, 1287 |
| Ple19I | CGATCG | 2 cut(s) | 1367, 1371 |
| PleI | GAGTC | 4 cut(s) | 452, 919, 1240, 1368 |
| PluTI | GGCGCC | 2 cut(s) | 440, 1101 |
| PmaCI | CACGTG | 1 cut(s) | 1277 |
| PmlI | CACGTG | 1 cut(s) | 1277 |
| PpsI | GAGTC | 4 cut(s) | 452, 919, 1240, 1368 |
| Ppu21I | YACGTR | 1 cut(s) | 1277 |
| PpuMI | RGGWCCY | 2 cut(s) | 129, 1236 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1166 |
| Psp124BI | GAGCTC | 1 cut(s) | 672 |
| Psp5II | RGGWCCY | 2 cut(s) | 129, 1236 |
| Psp6I | CCWGG | 1 cut(s) | 1287 |
| PspCI | CACGTG | 1 cut(s) | 1277 |
| PspFI | CCCAGC | 7 cut(s) | 9, 167, 529, 943, 1058, 1180, 1239 |
| PspGI | CCWGG | 1 cut(s) | 1287 |
| PspOMI | GGGCCC | 2 cut(s) | 375, 1062 |
| PspPPI | RGGWCCY | 2 cut(s) | 129, 1236 |
| PstI | CTGCAG | 1 cut(s) | 864 |
| PstNI | CAGNNNCTG | 2 cut(s) | 19, 655 |
| PvuI | CGATCG | 2 cut(s) | 1367, 1371 |
| PvuII | CAGCTG | 2 cut(s) | 1142, 1184 |
| RsaI | GTAC | 3 cut(s) | 982, 1150, 1192 |
| RsaNI | GTAC | 3 cut(s) | 981, 1149, 1191 |
| RseI | CAYNNNNRTG | 3 cut(s) | 96, 201, 899 |
| SacI | GAGCTC | 1 cut(s) | 672 |
| SacII | CCGCGG | 1 cut(s) | 781 |
| SalI | GTCGAC | 1 cut(s) | 381 |
| SaqAI | TTAA | 1 cut(s) | 1029 |
| Sau3AI | GATC | 4 cut(s) | 369, 870, 1364, 1368 |
| SchI | GAGTC | 4 cut(s) | 452, 920, 1240, 1369 |
| ScrFI | CCNGG | 5 cut(s) | 292, 674, 1289, 1303, 1304 |
| SduI | GDGCHC | 3 cut(s) | 379, 672, 1066 |
| SfaNI | GCATC | 2 cut(s) | 66, 177 |
| SfcI | CTRYAG | 1 cut(s) | 860 |
| SfoI | GGCGCC | 2 cut(s) | 438, 1099 |
| Sfr303I | CCGCGG | 1 cut(s) | 781 |
| SgrBI | CCGCGG | 1 cut(s) | 781 |
| SinI | GGWCC | 5 cut(s) | 129, 206, 282, 1236, 1347 |
| SmaI | CCCGGG | 1 cut(s) | 1304 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 96, 201, 899 |
| Sse9I | AATT | 1 cut(s) | 570 |
| SspDI | GGCGCC | 2 cut(s) | 436, 1097 |
| SstI | GAGCTC | 1 cut(s) | 672 |
| StyD4I | CCNGG | 5 cut(s) | 290, 672, 1287, 1301, 1302 |
| StyI | CCWWGG | 5 cut(s) | 685, 750, 879, 1044, 1402 |
| TaaI | ACNGT | 3 cut(s) | 118, 418, 480 |
| TaiI | ACGT | 5 cut(s) | 38, 777, 795, 1279, 1401 |
| TaqI | TCGA | 5 cut(s) | 382, 563, 644, 1363, 1367 |
| TasI | AATT | 1 cut(s) | 570 |
| TfiI | GAWTC | 2 cut(s) | 332, 1284 |
| Tru1I | TTAA | 1 cut(s) | 1029 |
| Tru9I | TTAA | 1 cut(s) | 1029 |
| TscAI | CASTG | 2 cut(s) | 273, 454 |
| TseFI | GTSAC | 5 cut(s) | 247, 274, 761, 1119, 1272 |
| TseI | GCWGC | 5 cut(s) | 70, 649, 859, 904, 986 |
| Tsp45I | GTSAC | 5 cut(s) | 247, 274, 761, 1119, 1272 |
| TspDTI | ATGAA | 1 cut(s) | 837 |
| TspGWI | ACGGA | 3 cut(s) | 444, 1244, 1372 |
| TspMI | CCCGGG | 1 cut(s) | 1302 |
| TspRI | CASTG | 2 cut(s) | 273, 454 |
| VpaK11BI | GGWCC | 5 cut(s) | 129, 206, 282, 1236, 1347 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 659, 860 |
| XmaI | CCCGGG | 1 cut(s) | 1302 |
| XmiI | GTMKAC | 1 cut(s) | 382 |
| ZraI | GACGTC | 2 cut(s) | 775, 1399 |