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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 629 |
| Acc16I | TGCGCA | 1 cut(s) | 891 |
| Acc65I | GGTACC | 1 cut(s) | 59 |
| AccB1I | GGYRCC | 5 cut(s) | 23, 59, 163, 734, 908 |
| AccBSI | CCGCTC | 3 cut(s) | 315, 391, 902 |
| AclWI | GGATC | 5 cut(s) | 546, 565, 759, 936, 949 |
| AcuI | CTGAAG | 3 cut(s) | 363, 560, 779 |
| AcvI | CACGTG | 1 cut(s) | 872 |
| AcyI | GRCGYC | 1 cut(s) | 24 |
| AdeI | CACNNNGTG | 1 cut(s) | 363 |
| AfaI | GTAC | 5 cut(s) | 61, 235, 658, 701, 789 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 69, 135, 141, 535, 820 |
| AhlI | ACTAGT | 1 cut(s) | 178 |
| AleI | CACNNNNGTG | 1 cut(s) | 671 |
| AluBI | AGCT | 4 cut(s) | 56, 456, 492, 644 |
| AluI | AGCT | 4 cut(s) | 56, 456, 492, 644 |
| Alw26I | GTCTC | 1 cut(s) | 386 |
| AlwI | GGATC | 5 cut(s) | 546, 565, 759, 936, 949 |
| Ama87I | CYCGRG | 2 cut(s) | 240, 897 |
| AoxI | GGCC | 4 cut(s) | 90, 143, 218, 818 |
| ApaI | GGGCCC | 1 cut(s) | 147 |
| ApeKI | GCWGC | 4 cut(s) | 109, 587, 740, 887 |
| Asp718I | GGTACC | 1 cut(s) | 59 |
| AspLEI | GCGC | 4 cut(s) | 26, 103, 127, 892 |
| AspS9I | GGNCC | 5 cut(s) | 91, 143, 144, 417, 818 |
| AsuC2I | CCSGG | 1 cut(s) | 136 |
| AsuHPI | GGTGA | 3 cut(s) | 322, 658, 815 |
| AvaI | CYCGRG | 2 cut(s) | 240, 897 |
| AvaII | GGWCC | 1 cut(s) | 417 |
| AxyI | CCTNAGG | 1 cut(s) | 780 |
| BaeGI | GKGCMC | 2 cut(s) | 147, 168 |
| BamHI | GGATCC | 1 cut(s) | 941 |
| BanI | GGYRCC | 5 cut(s) | 23, 59, 163, 734, 908 |
| BanII | GRGCYC | 3 cut(s) | 147, 929, 959 |
| BbrPI | CACGTG | 1 cut(s) | 872 |
| BbsI | GAAGAC | 1 cut(s) | 303 |
| BbvCI | CCTCAGC | 1 cut(s) | 534 |
| BbvI | GCAGC | 4 cut(s) | 121, 574, 727, 874 |
| BccI | CCATC | 3 cut(s) | 407, 709, 899 |
| BceAI | ACGGC | 4 cut(s) | 187, 212, 433, 570 |
| BcnI | CCSGG | 1 cut(s) | 136 |
| BcoDI | GTCTC | 1 cut(s) | 386 |
| BcuI | ACTAGT | 1 cut(s) | 178 |
| BfaI | CTAG | 2 cut(s) | 179, 395 |
| BfmI | CTRYAG | 1 cut(s) | 222 |
| BfoI | RGCGCY | 2 cut(s) | 27, 128 |
| BisI | GCNGC | 9 cut(s) | 5, 110, 263, 392, 549, 588, 738, 741, 888 |
| BlpI | GCTNAGC | 2 cut(s) | 457, 923 |
| BlsI | GCNGC | 9 cut(s) | 6, 111, 264, 393, 550, 589, 739, 742, 889 |
| Bme1390I | CCNGG | 1 cut(s) | 136 |
| Bme18I | GGWCC | 1 cut(s) | 417 |
| BmeT110I | CYCGRG | 2 cut(s) | 240, 897 |
| BmgT120I | GGNCC | 5 cut(s) | 91, 143, 144, 417, 818 |
| BmrFI | CCNGG | 1 cut(s) | 136 |
| BmsI | GCATC | 2 cut(s) | 198, 574 |
| BoxI | GACNNNNGTC | 1 cut(s) | 472 |
| BpiI | GAAGAC | 1 cut(s) | 303 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 653, 685 |
| BpmI | CTGGAG | 1 cut(s) | 218 |
| Bpu10I | CCTNAGC | 1 cut(s) | 534 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 457, 923 |
| BpuMI | CCSGG | 1 cut(s) | 136 |
| BsaAI | YACGTR | 1 cut(s) | 872 |
| BsaHI | GRCGYC | 1 cut(s) | 24 |
| BsaJI | CCNNGG | 4 cut(s) | 67, 113, 203, 814 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 69, 135, 141, 535, 820 |
| Bse118I | RCCGGY | 1 cut(s) | 820 |
| Bse21I | CCTNAGG | 1 cut(s) | 780 |
| BseDI | CCNNGG | 4 cut(s) | 67, 113, 203, 814 |
| BseGI | GGATG | 4 cut(s) | 213, 418, 832, 910 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 69, 135, 141, 535, 820 |
| BseRI | GAGGAG | 2 cut(s) | 664, 710 |
| BseSI | GKGCMC | 2 cut(s) | 147, 168 |
| BseXI | GCAGC | 4 cut(s) | 121, 574, 727, 874 |
| BseYI | CCCAGC | 1 cut(s) | 637 |
| BshFI | GGCC | 4 cut(s) | 92, 145, 220, 820 |
| BshNI | GGYRCC | 5 cut(s) | 23, 59, 163, 734, 908 |
| BsiHKCI | CYCGRG | 2 cut(s) | 240, 897 |
| BsiSI | CCGG | 2 cut(s) | 136, 821 |
| BslFI | GGGAC | 1 cut(s) | 430 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 69, 135, 141, 535, 820 |
| BsmAI | GTCTC | 1 cut(s) | 386 |
| BsmBI | CGTCTC | 1 cut(s) | 386 |
| BsmFI | GGGAC | 1 cut(s) | 430 |
| BsnI | GGCC | 4 cut(s) | 92, 145, 220, 820 |
| BsoBI | CYCGRG | 2 cut(s) | 240, 897 |
| Bsp120I | GGGCCC | 1 cut(s) | 143 |
| Bsp1286I | GDGCHC | 4 cut(s) | 147, 168, 929, 959 |
| Bsp143I | GATC | 4 cut(s) | 538, 570, 751, 941 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 457, 923 |
| Bsp19I | CCATGG | 1 cut(s) | 814 |
| BspANI | GGCC | 4 cut(s) | 92, 145, 220, 820 |
| BspHI | TCATGA | 1 cut(s) | 486 |
| BspPI | GGATC | 5 cut(s) | 546, 565, 759, 936, 949 |
| BspT107I | GGYRCC | 5 cut(s) | 23, 59, 163, 734, 908 |
| BsrBI | CCGCTC | 3 cut(s) | 315, 391, 902 |
| BsrFI | RCCGGY | 1 cut(s) | 820 |
| BssAI | RCCGGY | 1 cut(s) | 820 |
| BssECI | CCNNGG | 4 cut(s) | 67, 113, 203, 814 |
| BssMI | GATC | 4 cut(s) | 538, 570, 751, 941 |
| BssNI | GRCGYC | 1 cut(s) | 24 |
| BssT1I | CCWWGG | 2 cut(s) | 67, 814 |
| Bst4CI | ACNGT | 6 cut(s) | 32, 64, 421, 444, 858, 934 |
| Bst6I | CTCTTC | 1 cut(s) | 380 |
| BstACI | GRCGYC | 1 cut(s) | 24 |
| BstBAI | YACGTR | 1 cut(s) | 872 |
| BstC8I | GCNNGC | 3 cut(s) | 129, 708, 822 |
| BstDSI | CCRYGG | 2 cut(s) | 203, 814 |
| BstEII | GGTNACC | 1 cut(s) | 664 |
| BstF5I | GGATG | 4 cut(s) | 213, 418, 832, 910 |
| BstH2I | RGCGCY | 2 cut(s) | 27, 128 |
| BstHHI | GCGC | 4 cut(s) | 26, 103, 127, 892 |
| BstKTI | GATC | 4 cut(s) | 541, 573, 754, 944 |
| BstMAI | GTCTC | 1 cut(s) | 386 |
| BstMBI | GATC | 4 cut(s) | 538, 570, 751, 941 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 98, 109, 208, 217, 489, 554, 737 |
| BstNSI | RCATGY | 1 cut(s) | 706 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 472 |
| BstPI | GGTNACC | 1 cut(s) | 664 |
| BstSCI | CCNGG | 1 cut(s) | 134 |
| BstSFI | CTRYAG | 1 cut(s) | 222 |
| BstSLI | GKGCMC | 2 cut(s) | 147, 168 |
| BstV1I | GCAGC | 4 cut(s) | 121, 574, 727, 874 |
| BstV2I | GAAGAC | 1 cut(s) | 303 |
| BstX2I | RGATCY | 3 cut(s) | 570, 751, 941 |
| BstYI | RGATCY | 3 cut(s) | 570, 751, 941 |
| Bsu36I | CCTNAGG | 1 cut(s) | 780 |
| BsuRI | GGCC | 4 cut(s) | 92, 145, 220, 820 |
| BtgI | CCRYGG | 2 cut(s) | 203, 814 |
| BtsCI | GGATG | 4 cut(s) | 213, 418, 832, 910 |
| BtsIMutI | CAGTG | 1 cut(s) | 357 |
| Cac8I | GCNNGC | 3 cut(s) | 129, 708, 822 |
| CciI | TCATGA | 1 cut(s) | 486 |
| CfoI | GCGC | 4 cut(s) | 26, 103, 127, 892 |
| Cfr10I | RCCGGY | 1 cut(s) | 820 |
| Cfr13I | GGNCC | 5 cut(s) | 91, 143, 144, 417, 818 |
| Csp6I | GTAC | 5 cut(s) | 60, 234, 657, 700, 788 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 919, 954 |
| CviAII | CATG | 5 cut(s) | 487, 703, 712, 815, 919 |
| CviQI | GTAC | 5 cut(s) | 60, 234, 657, 700, 788 |
| DinI | GGCGCC | 1 cut(s) | 25 |
| DpnI | GATC | 4 cut(s) | 540, 572, 753, 943 |
| DpnII | GATC | 4 cut(s) | 538, 570, 751, 941 |
| DraIII | CACNNNGTG | 1 cut(s) | 363 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 629 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 629 |
| Eam1104I | CTCTTC | 1 cut(s) | 380 |
| EarI | CTCTTC | 1 cut(s) | 380 |
| EciI | GGCGGA | 2 cut(s) | 413, 839 |
| Eco130I | CCWWGG | 2 cut(s) | 67, 814 |
| Eco147I | AGGCCT | 1 cut(s) | 220 |
| Eco24I | GRGCYC | 3 cut(s) | 147, 929, 959 |
| Eco47I | GGWCC | 1 cut(s) | 417 |
| Eco57I | CTGAAG | 3 cut(s) | 363, 560, 779 |
| Eco72I | CACGTG | 1 cut(s) | 872 |
| Eco81I | CCTNAGG | 1 cut(s) | 780 |
| Eco88I | CYCGRG | 2 cut(s) | 240, 897 |
| Eco91I | GGTNACC | 1 cut(s) | 664 |
| EcoO109I | RGGNCCY | 2 cut(s) | 91, 144 |
| EcoO65I | GGTNACC | 1 cut(s) | 664 |
| EcoT14I | CCWWGG | 2 cut(s) | 67, 814 |
| EcoT38I | GRGCYC | 3 cut(s) | 147, 929, 959 |
| EgeI | GGCGCC | 1 cut(s) | 25 |
| EheI | GGCGCC | 1 cut(s) | 25 |
| ErhI | CCWWGG | 2 cut(s) | 67, 814 |
| Esp3I | CGTCTC | 1 cut(s) | 386 |
| FaeI | CATG | 5 cut(s) | 490, 706, 715, 818, 922 |
| FaiI | YATR | 9 cut(s) | 107, 339, 488, 525, 704, 713, 765, 816, 920 |
| FaqI | GGGAC | 1 cut(s) | 430 |
| FatI | CATG | 5 cut(s) | 486, 702, 711, 814, 918 |
| FauI | CCCGC | 2 cut(s) | 136, 184 |
| Fnu4HI | GCNGC | 9 cut(s) | 5, 110, 263, 392, 549, 588, 738, 741, 888 |
| FokI | GGATG | 4 cut(s) | 220, 425, 839, 917 |
| FriOI | GRGCYC | 3 cut(s) | 147, 929, 959 |
| Fsp4HI | GCNGC | 9 cut(s) | 5, 110, 263, 392, 549, 588, 738, 741, 888 |
| FspBI | CTAG | 2 cut(s) | 179, 395 |
| FspI | TGCGCA | 1 cut(s) | 891 |
| GlaI | GCGC | 4 cut(s) | 25, 102, 126, 891 |
| GluI | GCNGC | 9 cut(s) | 5, 110, 263, 392, 549, 588, 738, 741, 888 |
| GsaI | CCCAGC | 1 cut(s) | 641 |
| GsuI | CTGGAG | 1 cut(s) | 218 |
| HaeII | RGCGCY | 2 cut(s) | 27, 128 |
| HaeIII | GGCC | 4 cut(s) | 92, 145, 220, 820 |
| HapII | CCGG | 2 cut(s) | 136, 821 |
| HhaI | GCGC | 4 cut(s) | 26, 103, 127, 892 |
| Hin1I | GRCGYC | 1 cut(s) | 24 |
| Hin1II | CATG | 5 cut(s) | 490, 706, 715, 818, 922 |
| Hin6I | GCGC | 4 cut(s) | 24, 101, 125, 890 |
| HinP1I | GCGC | 4 cut(s) | 24, 101, 125, 890 |
| HincII | GTYRAC | 1 cut(s) | 776 |
| HindII | GTYRAC | 1 cut(s) | 776 |
| HinfI | GANTC | 3 cut(s) | 323, 652, 841 |
| HpaII | CCGG | 2 cut(s) | 136, 821 |
| HphI | GGTGA | 3 cut(s) | 322, 658, 815 |
| Hpy166II | GTNNAC | 2 cut(s) | 776, 788 |
| Hpy188I | TCNGA | 6 cut(s) | 255, 510, 521, 694, 862, 946 |
| Hpy188III | TCNNGA | 3 cut(s) | 320, 349, 487 |
| Hpy8I | GTNNAC | 2 cut(s) | 776, 788 |
| Hpy99I | CGWCG | 2 cut(s) | 32, 233 |
| HpyAV | CCTTC | 3 cut(s) | 145, 584, 721 |
| HpyCH4III | ACNGT | 6 cut(s) | 32, 64, 421, 444, 858, 934 |
| HpyCH4IV | ACGT | 1 cut(s) | 871 |
| HpyCH4V | TGCA | 3 cut(s) | 109, 211, 590 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 98, 109, 208, 217, 489, 554, 737 |
| HpySE526I | ACGT | 1 cut(s) | 871 |
| Hsp92I | GRCGYC | 1 cut(s) | 24 |
| Hsp92II | CATG | 5 cut(s) | 490, 706, 715, 818, 922 |
| HspAI | GCGC | 4 cut(s) | 24, 101, 125, 890 |
| KasI | GGCGCC | 1 cut(s) | 23 |
| KpnI | GGTACC | 1 cut(s) | 63 |
| KroI | GCCGGC | 1 cut(s) | 820 |
| KroNI | GCCGGC | 1 cut(s) | 822 |
| Kzo9I | GATC | 4 cut(s) | 538, 570, 751, 941 |
| LmnI | GCTCC | 3 cut(s) | 199, 332, 641 |
| Lsp1109I | GCAGC | 4 cut(s) | 121, 574, 727, 874 |
| LweI | GCATC | 2 cut(s) | 198, 574 |
| MaeI | CTAG | 2 cut(s) | 179, 395 |
| MaeII | ACGT | 1 cut(s) | 871 |
| MaeIII | GTNAC | 4 cut(s) | 181, 664, 809, 867 |
| MalI | GATC | 4 cut(s) | 540, 572, 753, 943 |
| MbiI | CCGCTC | 3 cut(s) | 315, 391, 902 |
| MboI | GATC | 4 cut(s) | 538, 570, 751, 941 |
| MboII | GAAGA | 6 cut(s) | 268, 296, 299, 308, 367, 622 |
| MfeI | CAATTG | 1 cut(s) | 212 |
| MflI | RGATCY | 3 cut(s) | 570, 751, 941 |
| MhlI | GDGCHC | 4 cut(s) | 147, 168, 929, 959 |
| MluCI | AATT | 1 cut(s) | 212 |
| Mly113I | GGCGCC | 1 cut(s) | 24 |
| MlyI | GAGTC | 3 cut(s) | 317, 661, 835 |
| MmeI | TCCRAC | 2 cut(s) | 390, 597 |
| MroNI | GCCGGC | 1 cut(s) | 820 |
| MseI | TTAA | 2 cut(s) | 567, 684 |
| MslI | CAYNNNNRTG | 1 cut(s) | 671 |
| MspA1I | CMGCKG | 2 cut(s) | 740, 838 |
| MspI | CCGG | 2 cut(s) | 136, 821 |
| MspR9I | CCNGG | 1 cut(s) | 136 |
| MunI | CAATTG | 1 cut(s) | 212 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 98, 109, 208, 217, 489, 554, 737 |
| NaeI | GCCGGC | 1 cut(s) | 822 |
| NarI | GGCGCC | 1 cut(s) | 24 |
| NciI | CCSGG | 1 cut(s) | 136 |
| NcoI | CCATGG | 1 cut(s) | 814 |
| NdeII | GATC | 4 cut(s) | 538, 570, 751, 941 |
| NgoMIV | GCCGGC | 1 cut(s) | 820 |
| NlaIII | CATG | 5 cut(s) | 490, 706, 715, 818, 922 |
| NmeAIII | GCCGAG | 1 cut(s) | 138 |
| NmuCI | GTSAC | 4 cut(s) | 181, 664, 809, 867 |
| NsbI | TGCGCA | 1 cut(s) | 891 |
| NspI | RCATGY | 1 cut(s) | 706 |
| OliI | CACNNNNGTG | 1 cut(s) | 671 |
| PagI | TCATGA | 1 cut(s) | 486 |
| PceI | AGGCCT | 1 cut(s) | 220 |
| PdiI | GCCGGC | 1 cut(s) | 822 |
| PkrI | GCNGC | 9 cut(s) | 6, 111, 264, 393, 550, 589, 739, 742, 889 |
| PleI | GAGTC | 3 cut(s) | 317, 660, 835 |
| PluTI | GGCGCC | 1 cut(s) | 27 |
| PmaCI | CACGTG | 1 cut(s) | 872 |
| PmlI | CACGTG | 1 cut(s) | 872 |
| PpsI | GAGTC | 3 cut(s) | 317, 660, 835 |
| Ppu21I | YACGTR | 1 cut(s) | 872 |
| PshAI | GACNNNNGTC | 1 cut(s) | 472 |
| PspCI | CACGTG | 1 cut(s) | 872 |
| PspEI | GGTNACC | 1 cut(s) | 664 |
| PspFI | CCCAGC | 1 cut(s) | 637 |
| PspOMI | GGGCCC | 1 cut(s) | 143 |
| PspPI | GGNCC | 5 cut(s) | 91, 143, 144, 417, 818 |
| PsuI | RGATCY | 3 cut(s) | 570, 751, 941 |
| RsaI | GTAC | 5 cut(s) | 61, 235, 658, 701, 789 |
| RsaNI | GTAC | 5 cut(s) | 60, 234, 657, 700, 788 |
| RseI | CAYNNNNRTG | 1 cut(s) | 671 |
| SaqAI | TTAA | 2 cut(s) | 567, 684 |
| SatI | GCNGC | 9 cut(s) | 5, 110, 263, 392, 549, 588, 738, 741, 888 |
| Sau3AI | GATC | 4 cut(s) | 538, 570, 751, 941 |
| Sau96I | GGNCC | 5 cut(s) | 91, 143, 144, 417, 818 |
| SchI | GAGTC | 3 cut(s) | 317, 661, 835 |
| ScrFI | CCNGG | 1 cut(s) | 136 |
| SduI | GDGCHC | 4 cut(s) | 147, 168, 929, 959 |
| SfaNI | GCATC | 2 cut(s) | 198, 574 |
| SfcI | CTRYAG | 1 cut(s) | 222 |
| SfoI | GGCGCC | 1 cut(s) | 25 |
| SinI | GGWCC | 1 cut(s) | 417 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 671 |
| SpeI | ACTAGT | 1 cut(s) | 178 |
| Sse9I | AATT | 1 cut(s) | 212 |
| SseBI | AGGCCT | 1 cut(s) | 220 |
| SspDI | GGCGCC | 1 cut(s) | 23 |
| SspMI | CTAG | 2 cut(s) | 179, 395 |
| StuI | AGGCCT | 1 cut(s) | 220 |
| StyD4I | CCNGG | 1 cut(s) | 134 |
| StyI | CCWWGG | 2 cut(s) | 67, 814 |
| TaaI | ACNGT | 6 cut(s) | 32, 64, 421, 444, 858, 934 |
| TaiI | ACGT | 1 cut(s) | 874 |
| TaqII | GACCGA | 1 cut(s) | 368 |
| TasI | AATT | 1 cut(s) | 212 |
| TatI | WGTACW | 1 cut(s) | 699 |
| TauI | GCSGC | 5 cut(s) | 7, 265, 394, 551, 740 |
| Tru1I | TTAA | 2 cut(s) | 567, 684 |
| Tru9I | TTAA | 2 cut(s) | 567, 684 |
| TscAI | CASTG | 1 cut(s) | 364 |
| TseFI | GTSAC | 4 cut(s) | 181, 664, 809, 867 |
| TseI | GCWGC | 4 cut(s) | 109, 587, 740, 887 |
| Tsp45I | GTSAC | 4 cut(s) | 181, 664, 809, 867 |
| TspDTI | ATGAA | 2 cut(s) | 297, 475 |
| TspGWI | ACGGA | 1 cut(s) | 368 |
| TspRI | CASTG | 1 cut(s) | 364 |
| VpaK11BI | GGWCC | 1 cut(s) | 417 |
| XceI | RCATGY | 1 cut(s) | 706 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 718 |
| XspI | CTAG | 2 cut(s) | 179, 395 |