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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 396 |
| AccBSI | CCGCTC | 3 cut(s) | 181, 319, 472 |
| AccI | GTMKAC | 1 cut(s) | 674 |
| AccII | CGCG | 1 cut(s) | 125 |
| AclWI | GGATC | 2 cut(s) | 528, 547 |
| AcoI | YGGCCR | 1 cut(s) | 705 |
| AcsI | RAATTY | 1 cut(s) | 134 |
| AcuI | CTGAAG | 2 cut(s) | 536, 542 |
| AfaI | GTAC | 2 cut(s) | 65, 128 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 154, 406, 459, 562, 602, 643 |
| AgsI | TTSAA | 2 cut(s) | 667, 742 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 484 |
| AjnI | CCWGG | 1 cut(s) | 108 |
| AleI | CACNNNNGTG | 1 cut(s) | 174 |
| AluBI | AGCT | 6 cut(s) | 17, 246, 325, 358, 379, 442 |
| AluI | AGCT | 6 cut(s) | 17, 246, 325, 358, 379, 442 |
| Alw26I | GTCTC | 2 cut(s) | 350, 492 |
| AlwI | GGATC | 2 cut(s) | 528, 547 |
| Ama87I | CYCGRG | 1 cut(s) | 467 |
| AoxI | GGCC | 4 cut(s) | 271, 408, 645, 705 |
| ApeKI | GCWGC | 3 cut(s) | 8, 322, 592 |
| ApoI | RAATTY | 1 cut(s) | 134 |
| AspLEI | GCGC | 2 cut(s) | 216, 755 |
| AspS9I | GGNCC | 1 cut(s) | 463 |
| AsuC2I | CCSGG | 1 cut(s) | 310 |
| AsuHPI | GGTGA | 1 cut(s) | 161 |
| AvaI | CYCGRG | 1 cut(s) | 467 |
| AvaII | GGWCC | 1 cut(s) | 463 |
| BanI | GGYRCC | 1 cut(s) | 396 |
| BbvI | GCAGC | 3 cut(s) | 20, 334, 604 |
| BccI | CCATC | 2 cut(s) | 461, 691 |
| BceAI | ACGGC | 4 cut(s) | 223, 580, 693, 775 |
| BciT130I | CCWGG | 1 cut(s) | 110 |
| BclI | TGATCA | 1 cut(s) | 229 |
| BcnI | CCSGG | 1 cut(s) | 310 |
| BcoDI | GTCTC | 2 cut(s) | 350, 492 |
| BfaI | CTAG | 1 cut(s) | 359 |
| BfoI | RGCGCY | 1 cut(s) | 756 |
| BlpI | GCTNAGC | 2 cut(s) | 247, 786 |
| Bme1390I | CCNGG | 2 cut(s) | 110, 310 |
| Bme18I | GGWCC | 1 cut(s) | 463 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 484 |
| BmeT110I | CYCGRG | 1 cut(s) | 467 |
| BmgT120I | GGNCC | 1 cut(s) | 463 |
| BmiI | GGNNCC | 3 cut(s) | 398, 464, 635 |
| BmrFI | CCNGG | 2 cut(s) | 110, 310 |
| BmrI | ACTGGG | 1 cut(s) | 772 |
| BmsI | GCATC | 6 cut(s) | 20, 92, 268, 305, 418, 706 |
| BmuI | ACTGGG | 1 cut(s) | 772 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 635, 667 |
| BpmI | CTGGAG | 2 cut(s) | 332, 515 |
| Bpu10I | CCTNAGC | 1 cut(s) | 326 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 247, 786 |
| BpuEI | CTTGAG | 1 cut(s) | 221 |
| BpuMI | CCSGG | 1 cut(s) | 310 |
| BsaI | GGTCTC | 1 cut(s) | 350 |
| BsaJI | CCNNGG | 5 cut(s) | 308, 405, 582, 654, 708 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 154, 406, 459, 562, 602, 643 |
| Bse1I | ACTGG | 3 cut(s) | 498, 531, 778 |
| BseBI | CCWGG | 1 cut(s) | 110 |
| BseDI | CCNNGG | 5 cut(s) | 308, 405, 582, 654, 708 |
| BseGI | GGATG | 1 cut(s) | 718 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 154, 406, 459, 562, 602, 643 |
| BseMII | CTCAG | 2 cut(s) | 306, 777 |
| BseNI | ACTGG | 3 cut(s) | 498, 531, 778 |
| BseRI | GAGGAG | 2 cut(s) | 347, 646 |
| BseXI | GCAGC | 3 cut(s) | 20, 334, 604 |
| BseYI | CCCAGC | 1 cut(s) | 615 |
| BsgI | GTGCAG | 2 cut(s) | 116, 611 |
| Bsh1236I | CGCG | 1 cut(s) | 125 |
| BshFI | GGCC | 4 cut(s) | 273, 410, 647, 707 |
| BshNI | GGYRCC | 1 cut(s) | 396 |
| BsiHKCI | CYCGRG | 1 cut(s) | 467 |
| BsiSI | CCGG | 1 cut(s) | 310 |
| BslFI | GGGAC | 2 cut(s) | 476, 760 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 154, 406, 459, 562, 602, 643 |
| BsmAI | GTCTC | 2 cut(s) | 350, 492 |
| BsmFI | GGGAC | 2 cut(s) | 476, 760 |
| BsnI | GGCC | 4 cut(s) | 273, 410, 647, 707 |
| Bso31I | GGTCTC | 1 cut(s) | 350 |
| BsoBI | CYCGRG | 1 cut(s) | 467 |
| Bsp143I | GATC | 4 cut(s) | 196, 229, 520, 552 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 247, 786 |
| Bsp19I | CCATGG | 1 cut(s) | 654 |
| BspANI | GGCC | 4 cut(s) | 273, 410, 647, 707 |
| BspCNI | CTCAG | 2 cut(s) | 307, 778 |
| BspFNI | CGCG | 1 cut(s) | 125 |
| BspLI | GGNNCC | 3 cut(s) | 398, 464, 635 |
| BspPI | GGATC | 2 cut(s) | 528, 547 |
| BspT107I | GGYRCC | 1 cut(s) | 396 |
| BspTNI | GGTCTC | 1 cut(s) | 350 |
| BsrBI | CCGCTC | 3 cut(s) | 181, 319, 472 |
| BsrI | ACTGG | 3 cut(s) | 498, 531, 778 |
| BssECI | CCNNGG | 5 cut(s) | 308, 405, 582, 654, 708 |
| BssMI | GATC | 4 cut(s) | 196, 229, 520, 552 |
| BssT1I | CCWWGG | 3 cut(s) | 405, 654, 708 |
| Bst2UI | CCWGG | 1 cut(s) | 110 |
| Bst4CI | ACNGT | 2 cut(s) | 63, 738 |
| BstC8I | GCNNGC | 6 cut(s) | 275, 305, 381, 433, 440, 690 |
| BstDEI | CTNAG | 5 cut(s) | 38, 247, 315, 326, 786 |
| BstDSI | CCRYGG | 1 cut(s) | 654 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 404, 560, 641 |
| BstF5I | GGATG | 1 cut(s) | 718 |
| BstFNI | CGCG | 1 cut(s) | 125 |
| BstH2I | RGCGCY | 1 cut(s) | 756 |
| BstHHI | GCGC | 2 cut(s) | 216, 755 |
| BstKTI | GATC | 4 cut(s) | 199, 232, 523, 555 |
| BstMAI | GTCTC | 2 cut(s) | 350, 492 |
| BstMBI | GATC | 4 cut(s) | 196, 229, 520, 552 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 14 |
| BstNI | CCWGG | 1 cut(s) | 110 |
| BstSCI | CCNGG | 2 cut(s) | 108, 308 |
| BstUI | CGCG | 1 cut(s) | 125 |
| BstV1I | GCAGC | 3 cut(s) | 20, 334, 604 |
| BstX2I | RGATCY | 1 cut(s) | 552 |
| BstYI | RGATCY | 1 cut(s) | 552 |
| BsuRI | GGCC | 4 cut(s) | 273, 410, 647, 707 |
| BtgI | CCRYGG | 1 cut(s) | 654 |
| BtgZI | GCGATG | 2 cut(s) | 439, 707 |
| BtsCI | GGATG | 1 cut(s) | 718 |
| BtsIMutI | CAGTG | 1 cut(s) | 59 |
| Cac8I | GCNNGC | 6 cut(s) | 275, 305, 381, 433, 440, 690 |
| CfoI | GCGC | 2 cut(s) | 216, 755 |
| Cfr13I | GGNCC | 1 cut(s) | 463 |
| Csp6I | GTAC | 2 cut(s) | 64, 127 |
| CviAII | CATG | 4 cut(s) | 30, 278, 482, 655 |
| CviQI | GTAC | 2 cut(s) | 64, 127 |
| DdeI | CTNAG | 5 cut(s) | 38, 247, 315, 326, 786 |
| DpnI | GATC | 4 cut(s) | 198, 231, 522, 554 |
| DpnII | GATC | 4 cut(s) | 196, 229, 520, 552 |
| DriI | GACNNNNNGTC | 1 cut(s) | 484 |
| EaeI | YGGCCR | 1 cut(s) | 705 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 484 |
| EciI | GGCGGA | 1 cut(s) | 398 |
| Eco130I | CCWWGG | 3 cut(s) | 405, 654, 708 |
| Eco31I | GGTCTC | 1 cut(s) | 350 |
| Eco47I | GGWCC | 1 cut(s) | 463 |
| Eco57I | CTGAAG | 2 cut(s) | 536, 542 |
| Eco88I | CYCGRG | 1 cut(s) | 467 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 404, 560, 641 |
| EcoO109I | RGGNCCY | 1 cut(s) | 463 |
| EcoRI | GAATTC | 1 cut(s) | 134 |
| EcoRII | CCWGG | 1 cut(s) | 108 |
| EcoT14I | CCWWGG | 3 cut(s) | 405, 654, 708 |
| ErhI | CCWWGG | 3 cut(s) | 405, 654, 708 |
| FaeI | CATG | 4 cut(s) | 33, 281, 485, 658 |
| FaiI | YATR | 8 cut(s) | 6, 31, 77, 279, 483, 506, 656, 682 |
| FaqI | GGGAC | 2 cut(s) | 476, 760 |
| FatI | CATG | 4 cut(s) | 29, 277, 481, 654 |
| FauI | CCCGC | 1 cut(s) | 612 |
| FbaI | TGATCA | 1 cut(s) | 229 |
| FblI | GTMKAC | 1 cut(s) | 674 |
| FokI | GGATG | 1 cut(s) | 725 |
| FspBI | CTAG | 1 cut(s) | 359 |
| GlaI | GCGC | 2 cut(s) | 215, 754 |
| GsaI | CCCAGC | 1 cut(s) | 619 |
| GsuI | CTGGAG | 2 cut(s) | 332, 515 |
| HaeII | RGCGCY | 1 cut(s) | 756 |
| HaeIII | GGCC | 4 cut(s) | 273, 410, 647, 707 |
| HapII | CCGG | 1 cut(s) | 310 |
| HhaI | GCGC | 2 cut(s) | 216, 755 |
| Hin1II | CATG | 4 cut(s) | 33, 281, 485, 658 |
| Hin6I | GCGC | 2 cut(s) | 214, 753 |
| HinP1I | GCGC | 2 cut(s) | 214, 753 |
| HinfI | GANTC | 2 cut(s) | 113, 566 |
| HpaII | CCGG | 1 cut(s) | 310 |
| HphI | GGTGA | 1 cut(s) | 161 |
| Hpy166II | GTNNAC | 1 cut(s) | 675 |
| Hpy188I | TCNGA | 2 cut(s) | 133, 586 |
| Hpy188III | TCNNGA | 5 cut(s) | 139, 200, 349, 541, 731 |
| Hpy8I | GTNNAC | 1 cut(s) | 675 |
| Hpy99I | CGWCG | 1 cut(s) | 422 |
| HpyAV | CCTTC | 4 cut(s) | 262, 511, 566, 742 |
| HpyCH4III | ACNGT | 2 cut(s) | 63, 738 |
| HpyCH4IV | ACGT | 2 cut(s) | 387, 420 |
| HpyCH4V | TGCA | 5 cut(s) | 8, 23, 97, 277, 592 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 14 |
| HpyF3I | CTNAG | 5 cut(s) | 38, 247, 315, 326, 786 |
| HpySE526I | ACGT | 2 cut(s) | 387, 420 |
| Hsp92II | CATG | 4 cut(s) | 33, 281, 485, 658 |
| HspAI | GCGC | 2 cut(s) | 214, 753 |
| Ksp22I | TGATCA | 1 cut(s) | 229 |
| Kzo9I | GATC | 4 cut(s) | 196, 229, 520, 552 |
| LmnI | GCTCC | 3 cut(s) | 355, 496, 633 |
| Lsp1109I | GCAGC | 3 cut(s) | 20, 334, 604 |
| LweI | GCATC | 6 cut(s) | 20, 92, 268, 305, 418, 706 |
| MaeI | CTAG | 1 cut(s) | 359 |
| MaeII | ACGT | 2 cut(s) | 387, 420 |
| MalI | GATC | 4 cut(s) | 198, 231, 522, 554 |
| MbiI | CCGCTC | 3 cut(s) | 181, 319, 472 |
| MboI | GATC | 4 cut(s) | 196, 229, 520, 552 |
| MboII | GAAGA | 2 cut(s) | 619, 635 |
| MflI | RGATCY | 1 cut(s) | 552 |
| MluCI | AATT | 2 cut(s) | 134, 546 |
| MlyI | GAGTC | 1 cut(s) | 107 |
| MmeI | TCCRAC | 1 cut(s) | 579 |
| MslI | CAYNNNNRTG | 1 cut(s) | 174 |
| MspA1I | CMGCKG | 1 cut(s) | 619 |
| MspI | CCGG | 1 cut(s) | 310 |
| MspR9I | CCNGG | 2 cut(s) | 110, 310 |
| MvaI | CCWGG | 1 cut(s) | 110 |
| MvnI | CGCG | 1 cut(s) | 125 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 14 |
| NciI | CCSGG | 1 cut(s) | 310 |
| NcoI | CCATGG | 1 cut(s) | 654 |
| NdeII | GATC | 4 cut(s) | 196, 229, 520, 552 |
| NlaIII | CATG | 4 cut(s) | 33, 281, 485, 658 |
| NlaIV | GGNNCC | 3 cut(s) | 398, 464, 635 |
| OliI | CACNNNNGTG | 1 cut(s) | 174 |
| PaeR7I | CTCGAG | 1 cut(s) | 467 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 122 |
| PfeI | GAWTC | 1 cut(s) | 566 |
| PleI | GAGTC | 1 cut(s) | 107 |
| PpsI | GAGTC | 1 cut(s) | 107 |
| PpuMI | RGGWCCY | 1 cut(s) | 463 |
| Psp5II | RGGWCCY | 1 cut(s) | 463 |
| Psp6I | CCWGG | 1 cut(s) | 108 |
| PspFI | CCCAGC | 1 cut(s) | 615 |
| PspGI | CCWGG | 1 cut(s) | 108 |
| PspN4I | GGNNCC | 3 cut(s) | 398, 464, 635 |
| PspPI | GGNCC | 1 cut(s) | 463 |
| PspPPI | RGGWCCY | 1 cut(s) | 463 |
| PspXI | VCTCGAGB | 1 cut(s) | 467 |
| PsuI | RGATCY | 1 cut(s) | 552 |
| RsaI | GTAC | 2 cut(s) | 65, 128 |
| RsaNI | GTAC | 2 cut(s) | 64, 127 |
| RseI | CAYNNNNRTG | 1 cut(s) | 174 |
| Sau3AI | GATC | 4 cut(s) | 196, 229, 520, 552 |
| Sau96I | GGNCC | 1 cut(s) | 463 |
| SchI | GAGTC | 1 cut(s) | 107 |
| ScrFI | CCNGG | 2 cut(s) | 110, 310 |
| SfaNI | GCATC | 6 cut(s) | 20, 92, 268, 305, 418, 706 |
| Sfr274I | CTCGAG | 1 cut(s) | 467 |
| SinI | GGWCC | 1 cut(s) | 463 |
| SlaI | CTCGAG | 1 cut(s) | 467 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 174 |
| SmlI | CTYRAG | 2 cut(s) | 200, 467 |
| SmoI | CTYRAG | 2 cut(s) | 200, 467 |
| Sse9I | AATT | 2 cut(s) | 134, 546 |
| SspMI | CTAG | 1 cut(s) | 359 |
| StyD4I | CCNGG | 2 cut(s) | 108, 308 |
| StyI | CCWWGG | 3 cut(s) | 405, 654, 708 |
| TaaI | ACNGT | 2 cut(s) | 63, 738 |
| TaiI | ACGT | 2 cut(s) | 390, 423 |
| TaqI | TCGA | 3 cut(s) | 218, 299, 468 |
| TasI | AATT | 2 cut(s) | 134, 546 |
| TatI | WGTACW | 1 cut(s) | 63 |
| TauI | GCSGC | 7 cut(s) | 125, 296, 322, 438, 533, 650, 707 |
| TfiI | GAWTC | 1 cut(s) | 566 |
| TscAI | CASTG | 1 cut(s) | 66 |
| TseI | GCWGC | 3 cut(s) | 8, 322, 592 |
| TspDTI | ATGAA | 1 cut(s) | 61 |
| TspRI | CASTG | 1 cut(s) | 66 |
| VpaK11BI | GGWCC | 1 cut(s) | 463 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 404, 560, 641 |
| XapI | RAATTY | 1 cut(s) | 134 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 376, 727 |
| XhoI | CTCGAG | 1 cut(s) | 467 |
| XmiI | GTMKAC | 1 cut(s) | 674 |
| XspI | CTAG | 1 cut(s) | 359 |