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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1518 |
| AccB1I | GGYRCC | 2 cut(s) | 890, 1453 |
| AccBSI | CCGCTC | 2 cut(s) | 1129, 1604 |
| AccII | CGCG | 4 cut(s) | 242, 720, 1164, 1355 |
| AcoI | YGGCCR | 2 cut(s) | 1204, 1561 |
| AcsI | RAATTY | 5 cut(s) | 80, 214, 594, 850, 1284 |
| AcuI | CTGAAG | 2 cut(s) | 1160, 1530 |
| AcyI | GRCGYC | 2 cut(s) | 1428, 1454 |
| AdeI | CACNNNGTG | 1 cut(s) | 1591 |
| AfaI | GTAC | 4 cut(s) | 208, 394, 1076, 1343 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 194, 943, 1052, 1246, 1402, 1450, 1463, 1485 |
| AflIII | ACRYGT | 1 cut(s) | 642 |
| AgeI | ACCGGT | 1 cut(s) | 53 |
| AgsI | TTSAA | 7 cut(s) | 80, 96, 113, 586, 608, 731, 770 |
| AjnI | CCWGG | 3 cut(s) | 146, 700, 1259 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 205, 237, 681, 713 |
| Alw21I | GWGCWC | 1 cut(s) | 1254 |
| Alw26I | GTCTC | 1 cut(s) | 1571 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 26 |
| Ama87I | CYCGRG | 2 cut(s) | 1133, 1239 |
| AoxI | GGCC | 9 cut(s) | 196, 343, 485, 1054, 1204, 1392, 1440, 1466, 1561 |
| ApaI | GGGCCC | 1 cut(s) | 200 |
| ApeKI | GCWGC | 6 cut(s) | 722, 784, 808, 922, 1028, 1303 |
| ApoI | RAATTY | 5 cut(s) | 80, 214, 594, 850, 1284 |
| AseI | ATTAAT | 1 cut(s) | 438 |
| AsiGI | ACCGGT | 1 cut(s) | 53 |
| AspLEI | GCGC | 6 cut(s) | 664, 722, 1166, 1456, 1502, 1519 |
| AspS9I | GGNCC | 7 cut(s) | 196, 197, 344, 416, 1393, 1441, 1466 |
| AsuC2I | CCSGG | 2 cut(s) | 468, 938 |
| AsuHPI | GGTGA | 2 cut(s) | 1030, 1373 |
| AvaI | CYCGRG | 2 cut(s) | 1133, 1239 |
| AvaII | GGWCC | 1 cut(s) | 416 |
| BaeGI | GKGCMC | 1 cut(s) | 200 |
| BalI | TGGCCA | 2 cut(s) | 1206, 1563 |
| BanI | GGYRCC | 2 cut(s) | 890, 1453 |
| BanII | GRGCYC | 1 cut(s) | 200 |
| BauI | CACGAG | 1 cut(s) | 542 |
| BbsI | GAAGAC | 2 cut(s) | 84, 251 |
| Bbv12I | GWGCWC | 1 cut(s) | 1254 |
| BbvCI | CCTCAGC | 1 cut(s) | 828 |
| BbvI | GCAGC | 6 cut(s) | 734, 771, 795, 934, 1015, 1315 |
| BccI | CCATC | 7 cut(s) | 733, 871, 1054, 1215, 1241, 1512, 1520 |
| BceAI | ACGGC | 2 cut(s) | 447, 1086 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 220, 254 |
| BciT130I | CCWGG | 3 cut(s) | 148, 702, 1261 |
| BciVI | GTATCC | 1 cut(s) | 259 |
| BcnI | CCSGG | 2 cut(s) | 468, 938 |
| BcoDI | GTCTC | 1 cut(s) | 1571 |
| BfaI | CTAG | 2 cut(s) | 318, 1497 |
| BfmI | CTRYAG | 3 cut(s) | 270, 843, 1448 |
| BfoI | RGCGCY | 3 cut(s) | 665, 1457, 1503 |
| BfuI | GTATCC | 1 cut(s) | 259 |
| BmcAI | AGTACT | 1 cut(s) | 394 |
| Bme1390I | CCNGG | 5 cut(s) | 148, 468, 702, 938, 1261 |
| Bme18I | GGWCC | 1 cut(s) | 416 |
| BmeT110I | CYCGRG | 2 cut(s) | 1133, 1239 |
| BmgT120I | GGNCC | 7 cut(s) | 196, 197, 344, 416, 1393, 1441, 1466 |
| BmiI | GGNNCC | 9 cut(s) | 198, 325, 346, 572, 775, 858, 892, 1455, 1477 |
| BmrFI | CCNGG | 5 cut(s) | 148, 468, 702, 938, 1261 |
| BmsI | GCATC | 6 cut(s) | 120, 518, 943, 997, 1040, 1336 |
| BpiI | GAAGAC | 2 cut(s) | 84, 251 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1241, 1273 |
| BpmI | CTGGAG | 4 cut(s) | 980, 1243, 1328, 1421 |
| Bpu10I | CCTNAGC | 3 cut(s) | 828, 1605, 1629 |
| BpuEI | CTTGAG | 1 cut(s) | 155 |
| BpuMI | CCSGG | 2 cut(s) | 468, 938 |
| BsaHI | GRCGYC | 2 cut(s) | 1428, 1454 |
| BsaJI | CCNNGG | 7 cut(s) | 147, 249, 559, 1260, 1437, 1480, 1558 |
| BsaWI | WCCGGW | 2 cut(s) | 53, 350 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 281, 311, 953, 983 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 194, 943, 1052, 1246, 1402, 1450, 1463, 1485 |
| Bse118I | RCCGGY | 1 cut(s) | 53 |
| Bse1I | ACTGG | 1 cut(s) | 1461 |
| Bse3DI | GCAATG | 1 cut(s) | 908 |
| BseBI | CCWGG | 3 cut(s) | 148, 702, 1261 |
| BseDI | CCNNGG | 7 cut(s) | 147, 249, 559, 1260, 1437, 1480, 1558 |
| BseGI | GGATG | 6 cut(s) | 409, 657, 958, 1147, 1231, 1504 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 194, 943, 1052, 1246, 1402, 1450, 1463, 1485 |
| BseMI | GCAATG | 1 cut(s) | 908 |
| BseMII | CTCAG | 4 cut(s) | 24, 819, 1602, 1619 |
| BseNI | ACTGG | 1 cut(s) | 1461 |
| BseRI | GAGGAG | 3 cut(s) | 845, 956, 1418 |
| BseSI | GKGCMC | 1 cut(s) | 200 |
| BseXI | GCAGC | 6 cut(s) | 734, 771, 795, 934, 1015, 1315 |
| BseYI | CCCAGC | 3 cut(s) | 257, 1395, 1443 |
| Bsh1236I | CGCG | 4 cut(s) | 242, 720, 1164, 1355 |
| BshFI | GGCC | 9 cut(s) | 198, 345, 487, 1056, 1206, 1394, 1442, 1468, 1563 |
| BshNI | GGYRCC | 2 cut(s) | 890, 1453 |
| BshTI | ACCGGT | 1 cut(s) | 53 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1254 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1133, 1239 |
| BsiSI | CCGG | 4 cut(s) | 54, 351, 468, 938 |
| BsiWI | CGTACG | 1 cut(s) | 1074 |
| BslFI | GGGAC | 2 cut(s) | 1533, 1543 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 194, 943, 1052, 1246, 1402, 1450, 1463, 1485 |
| BsmAI | GTCTC | 1 cut(s) | 1571 |
| BsmFI | GGGAC | 2 cut(s) | 1533, 1543 |
| BsnI | GGCC | 9 cut(s) | 198, 345, 487, 1056, 1206, 1394, 1442, 1468, 1563 |
| BsoBI | CYCGRG | 2 cut(s) | 1133, 1239 |
| Bsp120I | GGGCCC | 1 cut(s) | 196 |
| Bsp1286I | GDGCHC | 2 cut(s) | 200, 1254 |
| Bsp143I | GATC | 1 cut(s) | 175 |
| Bsp19I | CCATGG | 1 cut(s) | 1558 |
| Bsp68I | TCGCGA | 1 cut(s) | 242 |
| BspANI | GGCC | 9 cut(s) | 198, 345, 487, 1056, 1206, 1394, 1442, 1468, 1563 |
| BspCNI | CTCAG | 4 cut(s) | 23, 820, 1601, 1618 |
| BspFNI | CGCG | 4 cut(s) | 242, 720, 1164, 1355 |
| BspLI | GGNNCC | 9 cut(s) | 198, 325, 346, 572, 775, 858, 892, 1455, 1477 |
| BspQI | GCTCTTC | 1 cut(s) | 1293 |
| BspT107I | GGYRCC | 2 cut(s) | 890, 1453 |
| BsrBI | CCGCTC | 2 cut(s) | 1129, 1604 |
| BsrDI | GCAATG | 1 cut(s) | 908 |
| BsrFI | RCCGGY | 1 cut(s) | 53 |
| BsrI | ACTGG | 1 cut(s) | 1461 |
| BssAI | RCCGGY | 1 cut(s) | 53 |
| BssECI | CCNNGG | 7 cut(s) | 147, 249, 559, 1260, 1437, 1480, 1558 |
| BssMI | GATC | 1 cut(s) | 175 |
| BssNI | GRCGYC | 2 cut(s) | 1428, 1454 |
| BssSI | CACGAG | 1 cut(s) | 542 |
| BssT1I | CCWWGG | 4 cut(s) | 249, 559, 1480, 1558 |
| Bst2BI | CACGAG | 1 cut(s) | 542 |
| Bst2UI | CCWGG | 3 cut(s) | 148, 702, 1261 |
| Bst4CI | ACNGT | 4 cut(s) | 271, 311, 1018, 1171 |
| Bst6I | CTCTTC | 1 cut(s) | 1293 |
| BstACI | GRCGYC | 2 cut(s) | 1428, 1454 |
| BstC8I | GCNNGC | 7 cut(s) | 169, 522, 782, 986, 1127, 1162, 1322 |
| BstDEI | CTNAG | 5 cut(s) | 10, 828, 1588, 1605, 1629 |
| BstDSI | CCRYGG | 1 cut(s) | 1558 |
| BstF5I | GGATG | 6 cut(s) | 409, 657, 958, 1147, 1231, 1504 |
| BstFNI | CGCG | 4 cut(s) | 242, 720, 1164, 1355 |
| BstH2I | RGCGCY | 3 cut(s) | 665, 1457, 1503 |
| BstHHI | GCGC | 6 cut(s) | 664, 722, 1166, 1456, 1502, 1519 |
| BstKTI | GATC | 1 cut(s) | 178 |
| BstMAI | GTCTC | 1 cut(s) | 1571 |
| BstMBI | GATC | 1 cut(s) | 175 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 670, 919, 1300, 1453 |
| BstNI | CCWGG | 3 cut(s) | 148, 702, 1261 |
| BstNSI | RCATGY | 2 cut(s) | 475, 646 |
| BstSCI | CCNGG | 5 cut(s) | 146, 466, 700, 936, 1259 |
| BstSFI | CTRYAG | 3 cut(s) | 270, 843, 1448 |
| BstSLI | GKGCMC | 1 cut(s) | 200 |
| BstUI | CGCG | 4 cut(s) | 242, 720, 1164, 1355 |
| BstV1I | GCAGC | 6 cut(s) | 734, 771, 795, 934, 1015, 1315 |
| BstV2I | GAAGAC | 2 cut(s) | 84, 251 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 645, 1267 |
| BsuI | GTATCC | 1 cut(s) | 259 |
| BsuRI | GGCC | 9 cut(s) | 198, 345, 487, 1056, 1206, 1394, 1442, 1468, 1563 |
| BtgI | CCRYGG | 1 cut(s) | 1558 |
| BtgZI | GCGATG | 1 cut(s) | 752 |
| BtsCI | GGATG | 6 cut(s) | 409, 657, 958, 1147, 1231, 1504 |
| BtsI | GCAGTG | 2 cut(s) | 1431, 1630 |
| BtsIMutI | CAGTG | 6 cut(s) | 316, 1167, 1431, 1468, 1596, 1630 |
| BtuMI | TCGCGA | 1 cut(s) | 242 |
| Cac8I | GCNNGC | 7 cut(s) | 169, 522, 782, 986, 1127, 1162, 1322 |
| CaiI | CAGNNNCTG | 1 cut(s) | 26 |
| CfoI | GCGC | 6 cut(s) | 664, 722, 1166, 1456, 1502, 1519 |
| Cfr10I | RCCGGY | 1 cut(s) | 53 |
| Cfr13I | GGNCC | 7 cut(s) | 196, 197, 344, 416, 1393, 1441, 1466 |
| CseI | GACGC | 1 cut(s) | 1417 |
| Csp6I | GTAC | 4 cut(s) | 207, 393, 1075, 1342 |
| CspAI | ACCGGT | 1 cut(s) | 53 |
| CviAII | CATG | 5 cut(s) | 329, 375, 472, 643, 1559 |
| CviQI | GTAC | 4 cut(s) | 207, 393, 1075, 1342 |
| DdeI | CTNAG | 5 cut(s) | 10, 828, 1588, 1605, 1629 |
| DinI | GGCGCC | 1 cut(s) | 1455 |
| DpnI | GATC | 1 cut(s) | 177 |
| DpnII | GATC | 1 cut(s) | 175 |
| DraIII | CACNNNGTG | 1 cut(s) | 1591 |
| EaeI | YGGCCR | 2 cut(s) | 1204, 1561 |
| Eam1104I | CTCTTC | 1 cut(s) | 1293 |
| EarI | CTCTTC | 1 cut(s) | 1293 |
| EciI | GGCGGA | 3 cut(s) | 545, 971, 1424 |
| Eco130I | CCWWGG | 4 cut(s) | 249, 559, 1480, 1558 |
| Eco24I | GRGCYC | 1 cut(s) | 200 |
| Eco32I | GATATC | 1 cut(s) | 692 |
| Eco47I | GGWCC | 1 cut(s) | 416 |
| Eco57I | CTGAAG | 2 cut(s) | 1160, 1530 |
| Eco88I | CYCGRG | 2 cut(s) | 1133, 1239 |
| EcoO109I | RGGNCCY | 2 cut(s) | 196, 197 |
| EcoRI | GAATTC | 1 cut(s) | 214 |
| EcoRII | CCWGG | 3 cut(s) | 146, 700, 1259 |
| EcoRV | GATATC | 1 cut(s) | 692 |
| EcoT14I | CCWWGG | 4 cut(s) | 249, 559, 1480, 1558 |
| EcoT38I | GRGCYC | 1 cut(s) | 200 |
| EgeI | GGCGCC | 1 cut(s) | 1455 |
| EheI | GGCGCC | 1 cut(s) | 1455 |
| ErhI | CCWWGG | 4 cut(s) | 249, 559, 1480, 1558 |
| FaeI | CATG | 5 cut(s) | 332, 378, 475, 646, 1562 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 604, 636 |
| FaqI | GGGAC | 2 cut(s) | 1533, 1543 |
| FatI | CATG | 5 cut(s) | 328, 374, 471, 642, 1558 |
| FauI | CCCGC | 5 cut(s) | 517, 582, 785, 1169, 1478 |
| FauNDI | CATATG | 1 cut(s) | 1121 |
| FokI | GGATG | 6 cut(s) | 416, 664, 965, 1154, 1238, 1491 |
| FriOI | GRGCYC | 1 cut(s) | 200 |
| FspBI | CTAG | 2 cut(s) | 318, 1497 |
| FspI | TGCGCA | 1 cut(s) | 1518 |
| GlaI | GCGC | 6 cut(s) | 663, 721, 1165, 1455, 1501, 1518 |
| GsaI | CCCAGC | 3 cut(s) | 261, 1399, 1447 |
| GsuI | CTGGAG | 4 cut(s) | 980, 1243, 1328, 1421 |
| HaeII | RGCGCY | 3 cut(s) | 665, 1457, 1503 |
| HaeIII | GGCC | 9 cut(s) | 198, 345, 487, 1056, 1206, 1394, 1442, 1468, 1563 |
| HapII | CCGG | 4 cut(s) | 54, 351, 468, 938 |
| HgaI | GACGC | 1 cut(s) | 1417 |
| HhaI | GCGC | 6 cut(s) | 664, 722, 1166, 1456, 1502, 1519 |
| Hin1I | GRCGYC | 2 cut(s) | 1428, 1454 |
| Hin1II | CATG | 5 cut(s) | 332, 378, 475, 646, 1562 |
| Hin6I | GCGC | 6 cut(s) | 662, 720, 1164, 1454, 1500, 1517 |
| HinP1I | GCGC | 6 cut(s) | 662, 720, 1164, 1454, 1500, 1517 |
| HindIII | AAGCTT | 1 cut(s) | 461 |
| HinfI | GANTC | 4 cut(s) | 586, 715, 1061, 1546 |
| HpaII | CCGG | 4 cut(s) | 54, 351, 468, 938 |
| HphI | GGTGA | 2 cut(s) | 1030, 1373 |
| Hpy166II | GTNNAC | 2 cut(s) | 541, 1612 |
| Hpy188I | TCNGA | 5 cut(s) | 13, 143, 388, 420, 1492 |
| Hpy188III | TCNNGA | 6 cut(s) | 241, 542, 687, 959, 1239, 1508 |
| Hpy8I | GTNNAC | 2 cut(s) | 541, 1612 |
| Hpy99I | CGWCG | 1 cut(s) | 877 |
| HpyAV | CCTTC | 9 cut(s) | 109, 350, 407, 791, 988, 1184, 1351, 1467, 1505 |
| HpyCH4III | ACNGT | 4 cut(s) | 271, 311, 1018, 1171 |
| HpyCH4IV | ACGT | 2 cut(s) | 451, 1077 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 670, 919, 1300, 1453 |
| HpyF3I | CTNAG | 5 cut(s) | 10, 828, 1588, 1605, 1629 |
| HpySE526I | ACGT | 2 cut(s) | 451, 1077 |
| Hsp92I | GRCGYC | 2 cut(s) | 1428, 1454 |
| Hsp92II | CATG | 5 cut(s) | 332, 378, 475, 646, 1562 |
| HspAI | GCGC | 6 cut(s) | 662, 720, 1164, 1454, 1500, 1517 |
| KasI | GGCGCC | 1 cut(s) | 1453 |
| Kzo9I | GATC | 1 cut(s) | 175 |
| LguI | GCTCTTC | 1 cut(s) | 1293 |
| LmnI | GCTCC | 5 cut(s) | 832, 856, 1105, 1249, 1270 |
| Lsp1109I | GCAGC | 6 cut(s) | 734, 771, 795, 934, 1015, 1315 |
| LweI | GCATC | 6 cut(s) | 120, 518, 943, 997, 1040, 1336 |
| MaeI | CTAG | 2 cut(s) | 318, 1497 |
| MaeII | ACGT | 2 cut(s) | 451, 1077 |
| MaeIII | GTNAC | 6 cut(s) | 305, 704, 838, 1018, 1429, 1583 |
| MalI | GATC | 1 cut(s) | 177 |
| MbiI | CCGCTC | 2 cut(s) | 1129, 1604 |
| MboI | GATC | 1 cut(s) | 175 |
| MboII | GAAGA | 8 cut(s) | 84, 101, 256, 344, 758, 928, 1310, 1535 |
| MhlI | GDGCHC | 2 cut(s) | 200, 1254 |
| MlsI | TGGCCA | 2 cut(s) | 1206, 1563 |
| MluCI | AATT | 9 cut(s) | 80, 214, 435, 594, 608, 850, 1284, 1536, 1568 |
| MluNI | TGGCCA | 2 cut(s) | 1206, 1563 |
| Mly113I | GGCGCC | 1 cut(s) | 1454 |
| MlyI | GAGTC | 3 cut(s) | 724, 1055, 1555 |
| MmeI | TCCRAC | 3 cut(s) | 1119, 1203, 1248 |
| Mox20I | TGGCCA | 2 cut(s) | 1206, 1563 |
| MscI | TGGCCA | 2 cut(s) | 1206, 1563 |
| MseI | TTAA | 7 cut(s) | 32, 66, 105, 234, 438, 482, 611 |
| MslI | CAYNNNNRTG | 1 cut(s) | 333 |
| Msp20I | TGGCCA | 2 cut(s) | 1206, 1563 |
| MspA1I | CMGCKG | 4 cut(s) | 780, 925, 1306, 1399 |
| MspI | CCGG | 4 cut(s) | 54, 351, 468, 938 |
| MspR9I | CCNGG | 5 cut(s) | 148, 468, 702, 938, 1261 |
| MvaI | CCWGG | 3 cut(s) | 148, 702, 1261 |
| MvnI | CGCG | 4 cut(s) | 242, 720, 1164, 1355 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 670, 919, 1300, 1453 |
| NarI | GGCGCC | 1 cut(s) | 1454 |
| NciI | CCSGG | 2 cut(s) | 468, 938 |
| NcoI | CCATGG | 1 cut(s) | 1558 |
| NdeI | CATATG | 1 cut(s) | 1121 |
| NdeII | GATC | 1 cut(s) | 175 |
| NlaIII | CATG | 5 cut(s) | 332, 378, 475, 646, 1562 |
| NlaIV | GGNNCC | 9 cut(s) | 198, 325, 346, 572, 775, 858, 892, 1455, 1477 |
| NmeAIII | GCCGAG | 2 cut(s) | 1270, 1462 |
| NmuCI | GTSAC | 4 cut(s) | 838, 1018, 1429, 1583 |
| NruI | TCGCGA | 1 cut(s) | 242 |
| NsbI | TGCGCA | 1 cut(s) | 1518 |
| NspI | RCATGY | 2 cut(s) | 475, 646 |
| PciI | ACATGT | 1 cut(s) | 642 |
| PciSI | GCTCTTC | 1 cut(s) | 1293 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 540 |
| PfeI | GAWTC | 1 cut(s) | 586 |
| Pfl23II | CGTACG | 1 cut(s) | 1074 |
| PinAI | ACCGGT | 1 cut(s) | 53 |
| PleI | GAGTC | 3 cut(s) | 723, 1055, 1554 |
| PluTI | GGCGCC | 1 cut(s) | 1457 |
| PpsI | GAGTC | 3 cut(s) | 723, 1055, 1554 |
| PscI | ACATGT | 1 cut(s) | 642 |
| PshBI | ATTAAT | 1 cut(s) | 438 |
| Psp6I | CCWGG | 3 cut(s) | 146, 700, 1259 |
| PspFI | CCCAGC | 3 cut(s) | 257, 1395, 1443 |
| PspGI | CCWGG | 3 cut(s) | 146, 700, 1259 |
| PspLI | CGTACG | 1 cut(s) | 1074 |
| PspN4I | GGNNCC | 9 cut(s) | 198, 325, 346, 572, 775, 858, 892, 1455, 1477 |
| PspOMI | GGGCCC | 1 cut(s) | 196 |
| PspPI | GGNCC | 7 cut(s) | 196, 197, 344, 416, 1393, 1441, 1466 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 1067, 1092, 1099, 1124 |
| PstNI | CAGNNNCTG | 1 cut(s) | 26 |
| PvuII | CAGCTG | 2 cut(s) | 1306, 1399 |
| RruI | TCGCGA | 1 cut(s) | 242 |
| RsaI | GTAC | 4 cut(s) | 208, 394, 1076, 1343 |
| RsaNI | GTAC | 4 cut(s) | 207, 393, 1075, 1342 |
| RseI | CAYNNNNRTG | 1 cut(s) | 333 |
| SapI | GCTCTTC | 1 cut(s) | 1293 |
| SaqAI | TTAA | 7 cut(s) | 32, 66, 105, 234, 438, 482, 611 |
| Sau3AI | GATC | 1 cut(s) | 175 |
| Sau96I | GGNCC | 7 cut(s) | 196, 197, 344, 416, 1393, 1441, 1466 |
| ScaI | AGTACT | 1 cut(s) | 394 |
| SchI | GAGTC | 3 cut(s) | 724, 1055, 1555 |
| ScrFI | CCNGG | 5 cut(s) | 148, 468, 702, 938, 1261 |
| SduI | GDGCHC | 2 cut(s) | 200, 1254 |
| SfaNI | GCATC | 6 cut(s) | 120, 518, 943, 997, 1040, 1336 |
| SfcI | CTRYAG | 3 cut(s) | 270, 843, 1448 |
| SfoI | GGCGCC | 1 cut(s) | 1455 |
| SinI | GGWCC | 1 cut(s) | 416 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 333 |
| SmlI | CTYRAG | 1 cut(s) | 134 |
| SmoI | CTYRAG | 1 cut(s) | 134 |
| Sse9I | AATT | 9 cut(s) | 80, 214, 435, 594, 608, 850, 1284, 1536, 1568 |
| SspDI | GGCGCC | 1 cut(s) | 1453 |
| SspMI | CTAG | 2 cut(s) | 318, 1497 |
| StyD4I | CCNGG | 5 cut(s) | 146, 466, 700, 936, 1259 |
| StyI | CCWWGG | 4 cut(s) | 249, 559, 1480, 1558 |
| TaaI | ACNGT | 4 cut(s) | 271, 311, 1018, 1171 |
| TaiI | ACGT | 2 cut(s) | 454, 1080 |
| TaqI | TCGA | 2 cut(s) | 178, 1572 |
| TasI | AATT | 9 cut(s) | 80, 214, 435, 594, 608, 850, 1284, 1536, 1568 |
| TatI | WGTACW | 2 cut(s) | 206, 392 |
| TauI | GCSGC | 9 cut(s) | 167, 257, 490, 928, 1056, 1132, 1352, 1355, 1394 |
| TfiI | GAWTC | 1 cut(s) | 586 |
| Tru1I | TTAA | 7 cut(s) | 32, 66, 105, 234, 438, 482, 611 |
| Tru9I | TTAA | 7 cut(s) | 32, 66, 105, 234, 438, 482, 611 |
| TscAI | CASTG | 6 cut(s) | 316, 1174, 1438, 1468, 1596, 1630 |
| TseFI | GTSAC | 4 cut(s) | 838, 1018, 1429, 1583 |
| TseI | GCWGC | 6 cut(s) | 722, 784, 808, 922, 1028, 1303 |
| Tsp45I | GTSAC | 4 cut(s) | 838, 1018, 1429, 1583 |
| TspDTI | ATGAA | 3 cut(s) | 75, 345, 1113 |
| TspGWI | ACGGA | 1 cut(s) | 764 |
| TspRI | CASTG | 6 cut(s) | 316, 1174, 1438, 1468, 1596, 1630 |
| VpaK11BI | GGWCC | 1 cut(s) | 416 |
| VspI | ATTAAT | 1 cut(s) | 438 |
| XapI | RAATTY | 5 cut(s) | 80, 214, 594, 850, 1284 |
| XceI | RCATGY | 2 cut(s) | 475, 646 |
| XspI | CTAG | 2 cut(s) | 318, 1497 |
| ZrmI | AGTACT | 1 cut(s) | 394 |