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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 375 |
| AccB1I | GGYRCC | 3 cut(s) | 659, 695, 788 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 159 |
| AccBSI | CCGCTC | 1 cut(s) | 466 |
| AccII | CGCG | 5 cut(s) | 62, 145, 378, 452, 731 |
| AccIII | TCCGGA | 1 cut(s) | 190 |
| AclI | AACGTT | 1 cut(s) | 306 |
| AclWI | GGATC | 1 cut(s) | 414 |
| AcoI | YGGCCR | 1 cut(s) | 393 |
| AcyI | GRCGYC | 3 cut(s) | 372, 660, 696 |
| AfaI | GTAC | 1 cut(s) | 580 |
| AfeI | AGCGCT | 1 cut(s) | 245 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 159, 231, 402, 785, 798 |
| AflIII | ACRYGT | 3 cut(s) | 48, 424, 678 |
| AgsI | TTSAA | 3 cut(s) | 140, 602, 610 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 174 |
| AjiI | CACGTC | 2 cut(s) | 49, 427 |
| AjnI | CCWGG | 1 cut(s) | 200 |
| AluBI | AGCT | 5 cut(s) | 230, 436, 490, 613, 716 |
| AluI | AGCT | 5 cut(s) | 230, 436, 490, 613, 716 |
| Alw26I | GTCTC | 2 cut(s) | 433, 524 |
| AlwI | GGATC | 1 cut(s) | 414 |
| Ama87I | CYCGRG | 1 cut(s) | 779 |
| Aor13HI | TCCGGA | 1 cut(s) | 190 |
| Aor51HI | AGCGCT | 1 cut(s) | 245 |
| AoxI | GGCC | 1 cut(s) | 393 |
| ApeKI | GCWGC | 7 cut(s) | 215, 218, 263, 454, 457, 502, 593 |
| AspLEI | GCGC | 6 cut(s) | 62, 246, 454, 662, 698, 733 |
| AsuC2I | CCSGG | 2 cut(s) | 40, 329 |
| AsuHPI | GGTGA | 2 cut(s) | 221, 560 |
| AsuNHI | GCTAGC | 1 cut(s) | 5 |
| AvaI | CYCGRG | 1 cut(s) | 779 |
| BaeGI | GKGCMC | 1 cut(s) | 793 |
| BalI | TGGCCA | 1 cut(s) | 395 |
| BanI | GGYRCC | 3 cut(s) | 659, 695, 788 |
| BbvI | GCAGC | 7 cut(s) | 202, 205, 250, 441, 444, 514, 580 |
| BccI | CCATC | 5 cut(s) | 62, 161, 326, 404, 707 |
| BceAI | ACGGC | 2 cut(s) | 326, 752 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 770, 804 |
| BciT130I | CCWGG | 1 cut(s) | 202 |
| BcnI | CCSGG | 2 cut(s) | 40, 329 |
| BcoDI | GTCTC | 2 cut(s) | 433, 524 |
| BfaI | CTAG | 4 cut(s) | 6, 131, 231, 824 |
| BfmI | CTRYAG | 1 cut(s) | 458 |
| BfoI | RGCGCY | 3 cut(s) | 247, 663, 699 |
| BlpI | GCTNAGC | 1 cut(s) | 56 |
| Bme1390I | CCNGG | 3 cut(s) | 40, 202, 329 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 174 |
| BmeT110I | CYCGRG | 1 cut(s) | 779 |
| BmgBI | CACGTC | 2 cut(s) | 49, 427 |
| BmiI | GGNNCC | 6 cut(s) | 112, 274, 323, 661, 697, 790 |
| BmrFI | CCNGG | 3 cut(s) | 40, 202, 329 |
| BmsI | GCATC | 2 cut(s) | 196, 756 |
| BmtI | GCTAGC | 1 cut(s) | 9 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 800, 832 |
| BpmI | CTGGAG | 2 cut(s) | 431, 458 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 56 |
| BpuMI | CCSGG | 2 cut(s) | 40, 329 |
| BsaHI | GRCGYC | 3 cut(s) | 372, 660, 696 |
| BsaJI | CCNNGG | 4 cut(s) | 201, 376, 780, 816 |
| BsaWI | WCCGGW | 1 cut(s) | 190 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 159, 231, 402, 785, 798 |
| Bse1I | ACTGG | 1 cut(s) | 528 |
| BseAI | TCCGGA | 1 cut(s) | 190 |
| BseBI | CCWGG | 1 cut(s) | 202 |
| BseDI | CCNNGG | 4 cut(s) | 201, 376, 780, 816 |
| BseGI | GGATG | 8 cut(s) | 73, 153, 187, 337, 369, 396, 532, 747 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 159, 231, 402, 785, 798 |
| BseMII | CTCAG | 2 cut(s) | 70, 633 |
| BseNI | ACTGG | 1 cut(s) | 528 |
| BseSI | GKGCMC | 1 cut(s) | 793 |
| BseXI | GCAGC | 7 cut(s) | 202, 205, 250, 441, 444, 514, 580 |
| BseYI | CCCAGC | 2 cut(s) | 278, 541 |
| BsgI | GTGCAG | 1 cut(s) | 521 |
| Bsh1236I | CGCG | 5 cut(s) | 62, 145, 378, 452, 731 |
| Bsh1285I | CGRYCG | 1 cut(s) | 591 |
| BshFI | GGCC | 1 cut(s) | 395 |
| BshNI | GGYRCC | 3 cut(s) | 659, 695, 788 |
| BsiEI | CGRYCG | 1 cut(s) | 591 |
| BsiHKCI | CYCGRG | 1 cut(s) | 779 |
| BsiSI | CCGG | 4 cut(s) | 39, 191, 329, 400 |
| BslFI | GGGAC | 1 cut(s) | 349 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 159, 231, 402, 785, 798 |
| BsmAI | GTCTC | 2 cut(s) | 433, 524 |
| BsmBI | CGTCTC | 2 cut(s) | 433, 524 |
| BsmFI | GGGAC | 1 cut(s) | 349 |
| BsnI | GGCC | 1 cut(s) | 395 |
| BsoBI | CYCGRG | 1 cut(s) | 779 |
| Bsp1286I | GDGCHC | 1 cut(s) | 793 |
| Bsp13I | TCCGGA | 1 cut(s) | 190 |
| Bsp143I | GATC | 2 cut(s) | 406, 447 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 56 |
| BspANI | GGCC | 1 cut(s) | 395 |
| BspCNI | CTCAG | 2 cut(s) | 69, 634 |
| BspEI | TCCGGA | 1 cut(s) | 190 |
| BspFNI | CGCG | 5 cut(s) | 62, 145, 378, 452, 731 |
| BspLI | GGNNCC | 6 cut(s) | 112, 274, 323, 661, 697, 790 |
| BspMAI | CTGCAG | 1 cut(s) | 462 |
| BspOI | GCTAGC | 1 cut(s) | 9 |
| BspPI | GGATC | 1 cut(s) | 414 |
| BspT107I | GGYRCC | 3 cut(s) | 659, 695, 788 |
| BsrBI | CCGCTC | 1 cut(s) | 466 |
| BsrI | ACTGG | 1 cut(s) | 528 |
| BssECI | CCNNGG | 4 cut(s) | 201, 376, 780, 816 |
| BssMI | GATC | 2 cut(s) | 406, 447 |
| BssNI | GRCGYC | 3 cut(s) | 372, 660, 696 |
| Bst2UI | CCWGG | 1 cut(s) | 202 |
| BstACI | GRCGYC | 3 cut(s) | 372, 660, 696 |
| BstC8I | GCNNGC | 5 cut(s) | 7, 253, 268, 563, 658 |
| BstDEI | CTNAG | 2 cut(s) | 56, 642 |
| BstDSI | CCRYGG | 1 cut(s) | 376 |
| BstF5I | GGATG | 8 cut(s) | 73, 153, 187, 337, 369, 396, 532, 747 |
| BstFNI | CGCG | 5 cut(s) | 62, 145, 378, 452, 731 |
| BstH2I | RGCGCY | 3 cut(s) | 247, 663, 699 |
| BstHHI | GCGC | 6 cut(s) | 62, 246, 454, 662, 698, 733 |
| BstKTI | GATC | 2 cut(s) | 409, 450 |
| BstMAI | GTCTC | 2 cut(s) | 433, 524 |
| BstMBI | GATC | 2 cut(s) | 406, 447 |
| BstMCI | CGRYCG | 1 cut(s) | 591 |
| BstNI | CCWGG | 1 cut(s) | 202 |
| BstNSI | RCATGY | 1 cut(s) | 682 |
| BstSCI | CCNGG | 3 cut(s) | 38, 200, 327 |
| BstSFI | CTRYAG | 1 cut(s) | 458 |
| BstSLI | GKGCMC | 1 cut(s) | 793 |
| BstUI | CGCG | 5 cut(s) | 62, 145, 378, 452, 731 |
| BstV1I | GCAGC | 7 cut(s) | 202, 205, 250, 441, 444, 514, 580 |
| BstX2I | RGATCY | 1 cut(s) | 406 |
| BstYI | RGATCY | 1 cut(s) | 406 |
| BsuRI | GGCC | 1 cut(s) | 395 |
| BtgI | CCRYGG | 1 cut(s) | 376 |
| BtgZI | GCGATG | 1 cut(s) | 650 |
| BtrI | CACGTC | 2 cut(s) | 49, 427 |
| BtsCI | GGATG | 8 cut(s) | 73, 153, 187, 337, 369, 396, 532, 747 |
| BtsI | GCAGTG | 2 cut(s) | 34, 116 |
| BtsIMutI | CAGTG | 2 cut(s) | 34, 116 |
| Cac8I | GCNNGC | 5 cut(s) | 7, 253, 268, 563, 658 |
| CfoI | GCGC | 6 cut(s) | 62, 246, 454, 662, 698, 733 |
| Cfr42I | CCGCGG | 1 cut(s) | 379 |
| CseI | GACGC | 2 cut(s) | 80, 737 |
| Csp6I | GTAC | 1 cut(s) | 579 |
| CviAII | CATG | 2 cut(s) | 104, 679 |
| CviQI | GTAC | 1 cut(s) | 579 |
| DdeI | CTNAG | 2 cut(s) | 56, 642 |
| DinI | GGCGCC | 2 cut(s) | 661, 697 |
| DpnI | GATC | 2 cut(s) | 408, 449 |
| DpnII | GATC | 2 cut(s) | 406, 447 |
| DriI | GACNNNNNGTC | 1 cut(s) | 174 |
| EaeI | YGGCCR | 1 cut(s) | 393 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 174 |
| EciI | GGCGGA | 2 cut(s) | 80, 635 |
| Eco47III | AGCGCT | 1 cut(s) | 245 |
| Eco88I | CYCGRG | 1 cut(s) | 779 |
| EcoRII | CCWGG | 1 cut(s) | 200 |
| EgeI | GGCGCC | 2 cut(s) | 661, 697 |
| EheI | GGCGCC | 2 cut(s) | 661, 697 |
| Esp3I | CGTCTC | 2 cut(s) | 433, 524 |
| FaeI | CATG | 2 cut(s) | 107, 682 |
| FaiI | YATR | 4 cut(s) | 14, 105, 627, 680 |
| FaqI | GGGAC | 1 cut(s) | 349 |
| FatI | CATG | 2 cut(s) | 103, 678 |
| FauI | CCCGC | 4 cut(s) | 199, 371, 396, 498 |
| FokI | GGATG | 8 cut(s) | 80, 140, 174, 344, 376, 383, 539, 734 |
| FspBI | CTAG | 4 cut(s) | 6, 131, 231, 824 |
| GlaI | GCGC | 6 cut(s) | 61, 245, 453, 661, 697, 732 |
| GsaI | CCCAGC | 2 cut(s) | 282, 545 |
| GsuI | CTGGAG | 2 cut(s) | 431, 458 |
| HaeII | RGCGCY | 3 cut(s) | 247, 663, 699 |
| HaeIII | GGCC | 1 cut(s) | 395 |
| HapII | CCGG | 4 cut(s) | 39, 191, 329, 400 |
| HgaI | GACGC | 2 cut(s) | 80, 737 |
| HhaI | GCGC | 6 cut(s) | 62, 246, 454, 662, 698, 733 |
| Hin1I | GRCGYC | 3 cut(s) | 372, 660, 696 |
| Hin1II | CATG | 2 cut(s) | 107, 682 |
| Hin6I | GCGC | 6 cut(s) | 60, 244, 452, 660, 696, 731 |
| HinP1I | GCGC | 6 cut(s) | 60, 244, 452, 660, 696, 731 |
| HincII | GTYRAC | 1 cut(s) | 346 |
| HindII | GTYRAC | 1 cut(s) | 346 |
| HindIII | AAGCTT | 1 cut(s) | 714 |
| HinfI | GANTC | 4 cut(s) | 35, 83, 311, 509 |
| HpaII | CCGG | 4 cut(s) | 39, 191, 329, 400 |
| HphI | GGTGA | 2 cut(s) | 221, 560 |
| Hpy166II | GTNNAC | 2 cut(s) | 346, 676 |
| Hpy188I | TCNGA | 1 cut(s) | 46 |
| Hpy188III | TCNNGA | 3 cut(s) | 191, 410, 779 |
| Hpy8I | GTNNAC | 2 cut(s) | 346, 676 |
| Hpy99I | CGWCG | 1 cut(s) | 374 |
| HpyAV | CCTTC | 1 cut(s) | 646 |
| HpyCH4IV | ACGT | 5 cut(s) | 48, 306, 372, 426, 672 |
| HpyCH4V | TGCA | 4 cut(s) | 107, 460, 502, 565 |
| HpyF3I | CTNAG | 2 cut(s) | 56, 642 |
| HpySE526I | ACGT | 5 cut(s) | 48, 306, 372, 426, 672 |
| Hsp92I | GRCGYC | 3 cut(s) | 372, 660, 696 |
| Hsp92II | CATG | 2 cut(s) | 107, 682 |
| HspAI | GCGC | 6 cut(s) | 60, 244, 452, 660, 696, 731 |
| KasI | GGCGCC | 2 cut(s) | 659, 695 |
| Kpn2I | TCCGGA | 1 cut(s) | 190 |
| KspI | CCGCGG | 1 cut(s) | 379 |
| Kzo9I | GATC | 2 cut(s) | 406, 447 |
| LmnI | GCTCC | 5 cut(s) | 278, 298, 439, 463, 781 |
| Lsp1109I | GCAGC | 7 cut(s) | 202, 205, 250, 441, 444, 514, 580 |
| LweI | GCATC | 2 cut(s) | 196, 756 |
| MaeI | CTAG | 4 cut(s) | 6, 131, 231, 824 |
| MaeII | ACGT | 5 cut(s) | 48, 306, 372, 426, 672 |
| MaeIII | GTNAC | 3 cut(s) | 166, 236, 832 |
| MalI | GATC | 2 cut(s) | 408, 449 |
| MbiI | CCGCTC | 1 cut(s) | 466 |
| MboI | GATC | 2 cut(s) | 406, 447 |
| MboII | GAAGA | 1 cut(s) | 299 |
| MflI | RGATCY | 1 cut(s) | 406 |
| MhlI | GDGCHC | 1 cut(s) | 793 |
| MlsI | TGGCCA | 1 cut(s) | 395 |
| MluNI | TGGCCA | 1 cut(s) | 395 |
| Mly113I | GGCGCC | 2 cut(s) | 660, 696 |
| MlyI | GAGTC | 2 cut(s) | 320, 518 |
| Mox20I | TGGCCA | 1 cut(s) | 395 |
| MroI | TCCGGA | 1 cut(s) | 190 |
| MscI | TGGCCA | 1 cut(s) | 395 |
| MslI | CAYNNNNRTG | 1 cut(s) | 497 |
| Msp20I | TGGCCA | 1 cut(s) | 395 |
| MspA1I | CMGCKG | 5 cut(s) | 270, 278, 296, 378, 505 |
| MspI | CCGG | 4 cut(s) | 39, 191, 329, 400 |
| MspR9I | CCNGG | 3 cut(s) | 40, 202, 329 |
| MvaI | CCWGG | 1 cut(s) | 202 |
| MvnI | CGCG | 5 cut(s) | 62, 145, 378, 452, 731 |
| NarI | GGCGCC | 2 cut(s) | 660, 696 |
| NciI | CCSGG | 2 cut(s) | 40, 329 |
| NdeII | GATC | 2 cut(s) | 406, 447 |
| NheI | GCTAGC | 1 cut(s) | 5 |
| NlaIII | CATG | 2 cut(s) | 107, 682 |
| NlaIV | GGNNCC | 6 cut(s) | 112, 274, 323, 661, 697, 790 |
| NmuCI | GTSAC | 2 cut(s) | 166, 236 |
| NspI | RCATGY | 1 cut(s) | 682 |
| PciI | ACATGT | 1 cut(s) | 678 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 92 |
| PfeI | GAWTC | 2 cut(s) | 35, 83 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 159 |
| PfoI | TCCNGGA | 1 cut(s) | 327 |
| PleI | GAGTC | 2 cut(s) | 319, 517 |
| PluTI | GGCGCC | 2 cut(s) | 663, 699 |
| PpsI | GAGTC | 2 cut(s) | 319, 517 |
| PscI | ACATGT | 1 cut(s) | 678 |
| Psp1406I | AACGTT | 1 cut(s) | 306 |
| Psp6I | CCWGG | 1 cut(s) | 200 |
| PspFI | CCCAGC | 2 cut(s) | 278, 541 |
| PspGI | CCWGG | 1 cut(s) | 200 |
| PspN4I | GGNNCC | 6 cut(s) | 112, 274, 323, 661, 697, 790 |
| PstI | CTGCAG | 1 cut(s) | 462 |
| PsuI | RGATCY | 1 cut(s) | 406 |
| RsaI | GTAC | 1 cut(s) | 580 |
| RsaNI | GTAC | 1 cut(s) | 579 |
| RseI | CAYNNNNRTG | 1 cut(s) | 497 |
| SacII | CCGCGG | 1 cut(s) | 379 |
| Sau3AI | GATC | 2 cut(s) | 406, 447 |
| SchI | GAGTC | 2 cut(s) | 320, 518 |
| ScrFI | CCNGG | 3 cut(s) | 40, 202, 329 |
| SduI | GDGCHC | 1 cut(s) | 793 |
| SfaNI | GCATC | 2 cut(s) | 196, 756 |
| SfcI | CTRYAG | 1 cut(s) | 458 |
| SfoI | GGCGCC | 2 cut(s) | 661, 697 |
| Sfr303I | CCGCGG | 1 cut(s) | 379 |
| SgrBI | CCGCGG | 1 cut(s) | 379 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 497 |
| SspDI | GGCGCC | 2 cut(s) | 659, 695 |
| SspMI | CTAG | 4 cut(s) | 6, 131, 231, 824 |
| StyD4I | CCNGG | 3 cut(s) | 38, 200, 327 |
| TaiI | ACGT | 5 cut(s) | 51, 309, 375, 429, 675 |
| TaqI | TCGA | 2 cut(s) | 23, 702 |
| TauI | GCSGC | 8 cut(s) | 65, 224, 273, 476, 518, 541, 650, 767 |
| TfiI | GAWTC | 2 cut(s) | 35, 83 |
| TscAI | CASTG | 2 cut(s) | 34, 123 |
| TseFI | GTSAC | 2 cut(s) | 166, 236 |
| TseI | GCWGC | 7 cut(s) | 215, 218, 263, 454, 457, 502, 593 |
| Tsp45I | GTSAC | 2 cut(s) | 166, 236 |
| TspDTI | ATGAA | 1 cut(s) | 435 |
| TspGWI | ACGGA | 1 cut(s) | 84 |
| TspRI | CASTG | 2 cut(s) | 34, 123 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 159 |
| XceI | RCATGY | 1 cut(s) | 682 |
| XspI | CTAG | 4 cut(s) | 6, 131, 231, 824 |
| ZraI | GACGTC | 1 cut(s) | 373 |