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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 707 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 753 |
| AccBSI | CCGCTC | 1 cut(s) | 953 |
| AclWI | GGATC | 2 cut(s) | 12, 538 |
| AcoI | YGGCCR | 5 cut(s) | 231, 435, 519, 573, 636 |
| AcsI | RAATTY | 1 cut(s) | 929 |
| AcuI | CTGAAG | 2 cut(s) | 533, 711 |
| AcyI | GRCGYC | 2 cut(s) | 357, 764 |
| AfaI | GTAC | 2 cut(s) | 41, 780 |
| AgsI | TTSAA | 1 cut(s) | 658 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 975 |
| AhlI | ACTAGT | 1 cut(s) | 182 |
| AjiI | CACGTC | 1 cut(s) | 379 |
| AjnI | CCWGG | 3 cut(s) | 360, 456, 609 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 883, 915 |
| AluBI | AGCT | 5 cut(s) | 317, 349, 385, 484, 788 |
| AluI | AGCT | 5 cut(s) | 317, 349, 385, 484, 788 |
| Alw21I | GWGCWC | 1 cut(s) | 319 |
| Alw26I | GTCTC | 5 cut(s) | 342, 348, 481, 924, 962 |
| AlwI | GGATC | 2 cut(s) | 12, 538 |
| Ama87I | CYCGRG | 3 cut(s) | 844, 948, 987 |
| AoxI | GGCC | 7 cut(s) | 198, 231, 285, 435, 519, 573, 636 |
| ApeKI | GCWGC | 3 cut(s) | 413, 505, 632 |
| ApoI | RAATTY | 1 cut(s) | 929 |
| AspLEI | GCGC | 3 cut(s) | 94, 685, 746 |
| AspS9I | GGNCC | 2 cut(s) | 454, 817 |
| AsuC2I | CCSGG | 1 cut(s) | 49 |
| AsuHPI | GGTGA | 5 cut(s) | 239, 341, 556, 599, 608 |
| AvaI | CYCGRG | 3 cut(s) | 844, 948, 987 |
| AvaII | GGWCC | 2 cut(s) | 454, 817 |
| BalI | TGGCCA | 1 cut(s) | 437 |
| BanI | GGYRCC | 1 cut(s) | 707 |
| BanII | GRGCYC | 1 cut(s) | 319 |
| BauI | CACGAG | 1 cut(s) | 921 |
| Bbv12I | GWGCWC | 1 cut(s) | 319 |
| BbvCI | CCTCAGC | 2 cut(s) | 273, 731 |
| BbvI | GCAGC | 3 cut(s) | 425, 492, 619 |
| BccI | CCATC | 4 cut(s) | 872, 950, 1028, 1043 |
| BceAI | ACGGC | 4 cut(s) | 185, 324, 695, 761 |
| BciT130I | CCWGG | 3 cut(s) | 362, 458, 611 |
| BcnI | CCSGG | 1 cut(s) | 49 |
| BcoDI | GTCTC | 5 cut(s) | 342, 348, 481, 924, 962 |
| BcuI | ACTAGT | 1 cut(s) | 182 |
| BfaI | CTAG | 2 cut(s) | 183, 192 |
| BfmI | CTRYAG | 1 cut(s) | 963 |
| BfoI | RGCGCY | 2 cut(s) | 95, 686 |
| BlpI | GCTNAGC | 1 cut(s) | 60 |
| Bme1390I | CCNGG | 4 cut(s) | 49, 362, 458, 611 |
| Bme18I | GGWCC | 2 cut(s) | 454, 817 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 975 |
| BmeT110I | CYCGRG | 3 cut(s) | 844, 948, 987 |
| BmgBI | CACGTC | 1 cut(s) | 379 |
| BmgT120I | GGNCC | 2 cut(s) | 454, 817 |
| BmiI | GGNNCC | 5 cut(s) | 111, 265, 455, 709, 819 |
| BmrFI | CCNGG | 4 cut(s) | 49, 362, 458, 611 |
| BmrI | ACTGGG | 1 cut(s) | 969 |
| BmsI | GCATC | 5 cut(s) | 53, 400, 409, 717, 784 |
| BmuI | ACTGGG | 1 cut(s) | 969 |
| BpmI | CTGGAG | 2 cut(s) | 479, 506 |
| Bpu10I | CCTNAGC | 3 cut(s) | 273, 731, 789 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 60 |
| BpuMI | CCSGG | 1 cut(s) | 49 |
| Bsa29I | ATCGAT | 1 cut(s) | 18 |
| BsaHI | GRCGYC | 2 cut(s) | 357, 764 |
| BsaI | GGTCTC | 1 cut(s) | 342 |
| BsaJI | CCNNGG | 7 cut(s) | 105, 360, 396, 424, 525, 576, 610 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 883, 913 |
| Bse118I | RCCGGY | 1 cut(s) | 802 |
| Bse1I | ACTGG | 4 cut(s) | 93, 234, 576, 975 |
| Bse3DI | GCAATG | 1 cut(s) | 250 |
| BseBI | CCWGG | 3 cut(s) | 362, 458, 611 |
| BseCI | ATCGAT | 1 cut(s) | 18 |
| BseDI | CCNNGG | 7 cut(s) | 105, 360, 396, 424, 525, 576, 610 |
| BseGI | GGATG | 5 cut(s) | 44, 799, 883, 961, 1015 |
| BseMI | GCAATG | 1 cut(s) | 250 |
| BseMII | CTCAG | 6 cut(s) | 74, 264, 353, 722, 839, 899 |
| BseNI | ACTGG | 4 cut(s) | 93, 234, 576, 975 |
| BseRI | GAGGAG | 2 cut(s) | 339, 888 |
| BseX3I | CGGCCG | 1 cut(s) | 636 |
| BseXI | GCAGC | 3 cut(s) | 425, 492, 619 |
| BseYI | CCCAGC | 2 cut(s) | 255, 349 |
| Bsh1285I | CGRYCG | 1 cut(s) | 639 |
| BshFI | GGCC | 7 cut(s) | 200, 233, 287, 437, 521, 575, 638 |
| BshNI | GGYRCC | 1 cut(s) | 707 |
| BshVI | ATCGAT | 1 cut(s) | 18 |
| BsiEI | CGRYCG | 1 cut(s) | 639 |
| BsiHKAI | GWGCWC | 1 cut(s) | 319 |
| BsiHKCI | CYCGRG | 3 cut(s) | 844, 948, 987 |
| BsiSI | CCGG | 3 cut(s) | 48, 803, 872 |
| BslFI | GGGAC | 5 cut(s) | 193, 467, 484, 803, 963 |
| BsmAI | GTCTC | 5 cut(s) | 342, 348, 481, 924, 962 |
| BsmBI | CGTCTC | 1 cut(s) | 348 |
| BsmFI | GGGAC | 5 cut(s) | 193, 467, 484, 803, 963 |
| BsnI | GGCC | 7 cut(s) | 200, 233, 287, 437, 521, 575, 638 |
| Bso31I | GGTCTC | 1 cut(s) | 342 |
| BsoBI | CYCGRG | 3 cut(s) | 844, 948, 987 |
| Bsp1286I | GDGCHC | 1 cut(s) | 319 |
| Bsp143I | GATC | 4 cut(s) | 4, 15, 511, 543 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 60 |
| BspANI | GGCC | 7 cut(s) | 200, 233, 287, 437, 521, 575, 638 |
| BspCNI | CTCAG | 7 cut(s) | 4, 73, 265, 352, 723, 838, 898 |
| BspDI | ATCGAT | 1 cut(s) | 18 |
| BspLI | GGNNCC | 5 cut(s) | 111, 265, 455, 709, 819 |
| BspPI | GGATC | 2 cut(s) | 12, 538 |
| BspT107I | GGYRCC | 1 cut(s) | 707 |
| BspTNI | GGTCTC | 1 cut(s) | 342 |
| BsrBI | CCGCTC | 1 cut(s) | 953 |
| BsrDI | GCAATG | 1 cut(s) | 250 |
| BsrFI | RCCGGY | 1 cut(s) | 802 |
| BsrI | ACTGG | 4 cut(s) | 93, 234, 576, 975 |
| BssAI | RCCGGY | 1 cut(s) | 802 |
| BssECI | CCNNGG | 7 cut(s) | 105, 360, 396, 424, 525, 576, 610 |
| BssMI | GATC | 4 cut(s) | 4, 15, 511, 543 |
| BssNI | GRCGYC | 2 cut(s) | 357, 764 |
| BssSI | CACGAG | 1 cut(s) | 921 |
| BssT1I | CCWWGG | 3 cut(s) | 105, 396, 525 |
| Bst2BI | CACGAG | 1 cut(s) | 921 |
| Bst2UI | CCWGG | 3 cut(s) | 362, 458, 611 |
| Bst4CI | ACNGT | 6 cut(s) | 70, 158, 227, 245, 407, 836 |
| BstACI | GRCGYC | 2 cut(s) | 357, 764 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 419 |
| BstC8I | GCNNGC | 8 cut(s) | 34, 54, 289, 372, 774, 786, 804, 841 |
| BstDEI | CTNAG | 9 cut(s) | 12, 60, 95, 273, 339, 731, 789, 825, 885 |
| BstDSI | CCRYGG | 1 cut(s) | 424 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 395 |
| BstF5I | GGATG | 5 cut(s) | 44, 799, 883, 961, 1015 |
| BstH2I | RGCGCY | 2 cut(s) | 95, 686 |
| BstHHI | GCGC | 3 cut(s) | 94, 685, 746 |
| BstKTI | GATC | 4 cut(s) | 7, 18, 514, 546 |
| BstMAI | GTCTC | 5 cut(s) | 342, 348, 481, 924, 962 |
| BstMBI | GATC | 4 cut(s) | 4, 15, 511, 543 |
| BstMCI | CGRYCG | 1 cut(s) | 639 |
| BstNI | CCWGG | 3 cut(s) | 362, 458, 611 |
| BstNSI | RCATGY | 1 cut(s) | 40 |
| BstSCI | CCNGG | 4 cut(s) | 47, 360, 456, 609 |
| BstSFI | CTRYAG | 1 cut(s) | 963 |
| BstV1I | GCAGC | 3 cut(s) | 425, 492, 619 |
| BstX2I | RGATCY | 1 cut(s) | 543 |
| BstYI | RGATCY | 1 cut(s) | 543 |
| BstZI | CGGCCG | 1 cut(s) | 636 |
| Bsu15I | ATCGAT | 1 cut(s) | 18 |
| BsuRI | GGCC | 7 cut(s) | 200, 233, 287, 437, 521, 575, 638 |
| BsuTUI | ATCGAT | 1 cut(s) | 18 |
| BtgI | CCRYGG | 1 cut(s) | 424 |
| BtrI | CACGTC | 1 cut(s) | 379 |
| BtsCI | GGATG | 5 cut(s) | 44, 799, 883, 961, 1015 |
| BtsI | GCAGTG | 1 cut(s) | 868 |
| BtsIMutI | CAGTG | 4 cut(s) | 86, 206, 241, 868 |
| Cac8I | GCNNGC | 8 cut(s) | 34, 54, 289, 372, 774, 786, 804, 841 |
| CciNI | GCGGCCGC | 1 cut(s) | 636 |
| CfoI | GCGC | 3 cut(s) | 94, 685, 746 |
| Cfr10I | RCCGGY | 1 cut(s) | 802 |
| Cfr13I | GGNCC | 2 cut(s) | 454, 817 |
| ClaI | ATCGAT | 1 cut(s) | 18 |
| CseI | GACGC | 3 cut(s) | 365, 753, 1052 |
| Csp6I | GTAC | 2 cut(s) | 40, 779 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 811, 846 |
| CviAII | CATG | 4 cut(s) | 37, 320, 473, 769 |
| CviQI | GTAC | 2 cut(s) | 40, 779 |
| DdeI | CTNAG | 9 cut(s) | 12, 60, 95, 273, 339, 731, 789, 825, 885 |
| DpnI | GATC | 4 cut(s) | 6, 17, 513, 545 |
| DpnII | GATC | 4 cut(s) | 4, 15, 511, 543 |
| DriI | GACNNNNNGTC | 1 cut(s) | 975 |
| EaeI | YGGCCR | 5 cut(s) | 231, 435, 519, 573, 636 |
| EagI | CGGCCG | 1 cut(s) | 636 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 975 |
| EciI | GGCGGA | 5 cut(s) | 389, 683, 789, 890, 1008 |
| Ecl136II | GAGCTC | 1 cut(s) | 317 |
| EclXI | CGGCCG | 1 cut(s) | 636 |
| Eco130I | CCWWGG | 3 cut(s) | 105, 396, 525 |
| Eco147I | AGGCCT | 1 cut(s) | 287 |
| Eco24I | GRGCYC | 1 cut(s) | 319 |
| Eco31I | GGTCTC | 1 cut(s) | 342 |
| Eco47I | GGWCC | 2 cut(s) | 454, 817 |
| Eco52I | CGGCCG | 1 cut(s) | 636 |
| Eco53kI | GAGCTC | 1 cut(s) | 317 |
| Eco57I | CTGAAG | 2 cut(s) | 533, 711 |
| Eco88I | CYCGRG | 3 cut(s) | 844, 948, 987 |
| EcoICRI | GAGCTC | 1 cut(s) | 317 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 395 |
| EcoO109I | RGGNCCY | 1 cut(s) | 454 |
| EcoRII | CCWGG | 3 cut(s) | 360, 456, 609 |
| EcoT14I | CCWWGG | 3 cut(s) | 105, 396, 525 |
| EcoT38I | GRGCYC | 1 cut(s) | 319 |
| ErhI | CCWWGG | 3 cut(s) | 105, 396, 525 |
| Esp3I | CGTCTC | 1 cut(s) | 348 |
| FaeI | CATG | 4 cut(s) | 40, 323, 476, 772 |
| FaqI | GGGAC | 5 cut(s) | 193, 467, 484, 803, 963 |
| FatI | CATG | 4 cut(s) | 36, 319, 472, 768 |
| FauI | CCCGC | 3 cut(s) | 169, 304, 546 |
| FokI | GGATG | 5 cut(s) | 31, 806, 890, 968, 1002 |
| FriOI | GRGCYC | 1 cut(s) | 319 |
| FspBI | CTAG | 2 cut(s) | 183, 192 |
| GlaI | GCGC | 3 cut(s) | 93, 684, 745 |
| GsaI | CCCAGC | 2 cut(s) | 259, 353 |
| GsuI | CTGGAG | 2 cut(s) | 479, 506 |
| HaeII | RGCGCY | 2 cut(s) | 95, 686 |
| HaeIII | GGCC | 7 cut(s) | 200, 233, 287, 437, 521, 575, 638 |
| HapII | CCGG | 3 cut(s) | 48, 803, 872 |
| HgaI | GACGC | 3 cut(s) | 365, 753, 1052 |
| HhaI | GCGC | 3 cut(s) | 94, 685, 746 |
| Hin1I | GRCGYC | 2 cut(s) | 357, 764 |
| Hin1II | CATG | 4 cut(s) | 40, 323, 476, 772 |
| Hin6I | GCGC | 3 cut(s) | 92, 683, 744 |
| HinP1I | GCGC | 3 cut(s) | 92, 683, 744 |
| HincII | GTYRAC | 1 cut(s) | 832 |
| HindII | GTYRAC | 1 cut(s) | 832 |
| HinfI | GANTC | 3 cut(s) | 77, 557, 970 |
| HpaII | CCGG | 3 cut(s) | 48, 803, 872 |
| HphI | GGTGA | 5 cut(s) | 239, 341, 556, 599, 608 |
| Hpy166II | GTNNAC | 1 cut(s) | 832 |
| Hpy188I | TCNGA | 4 cut(s) | 82, 342, 913, 997 |
| Hpy188III | TCNNGA | 1 cut(s) | 298 |
| Hpy8I | GTNNAC | 1 cut(s) | 832 |
| Hpy99I | CGWCG | 2 cut(s) | 158, 170 |
| HpyAV | CCTTC | 6 cut(s) | 529, 557, 673, 694, 754, 802 |
| HpyCH4III | ACNGT | 6 cut(s) | 70, 158, 227, 245, 407, 836 |
| HpyCH4IV | ACGT | 2 cut(s) | 378, 720 |
| HpyCH4V | TGCA | 3 cut(s) | 413, 508, 866 |
| HpyF3I | CTNAG | 9 cut(s) | 12, 60, 95, 273, 339, 731, 789, 825, 885 |
| HpySE526I | ACGT | 2 cut(s) | 378, 720 |
| Hsp92I | GRCGYC | 2 cut(s) | 357, 764 |
| Hsp92II | CATG | 4 cut(s) | 40, 323, 476, 772 |
| HspAI | GCGC | 3 cut(s) | 92, 683, 744 |
| KroI | GCCGGC | 1 cut(s) | 802 |
| KroNI | GCCGGC | 1 cut(s) | 804 |
| Kzo9I | GATC | 4 cut(s) | 4, 15, 511, 543 |
| LmnI | GCTCC | 8 cut(s) | 263, 296, 314, 346, 382, 460, 487, 802 |
| Lsp1109I | GCAGC | 3 cut(s) | 425, 492, 619 |
| LweI | GCATC | 5 cut(s) | 53, 400, 409, 717, 784 |
| MaeI | CTAG | 2 cut(s) | 183, 192 |
| MaeII | ACGT | 2 cut(s) | 378, 720 |
| MaeIII | GTNAC | 3 cut(s) | 245, 329, 562 |
| MalI | GATC | 4 cut(s) | 6, 17, 513, 545 |
| MbiI | CCGCTC | 1 cut(s) | 953 |
| MboI | GATC | 4 cut(s) | 4, 15, 511, 543 |
| MboII | GAAGA | 1 cut(s) | 313 |
| MfeI | CAATTG | 1 cut(s) | 444 |
| MflI | RGATCY | 1 cut(s) | 543 |
| MhlI | GDGCHC | 1 cut(s) | 319 |
| MlsI | TGGCCA | 1 cut(s) | 437 |
| MluCI | AATT | 3 cut(s) | 22, 444, 929 |
| MluNI | TGGCCA | 1 cut(s) | 437 |
| MlyI | GAGTC | 2 cut(s) | 566, 964 |
| MmeI | TCCRAC | 1 cut(s) | 241 |
| Mox20I | TGGCCA | 1 cut(s) | 437 |
| MreI | CGCCGGCG | 1 cut(s) | 802 |
| MroNI | GCCGGC | 1 cut(s) | 802 |
| MscI | TGGCCA | 1 cut(s) | 437 |
| MseI | TTAA | 1 cut(s) | 582 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1032 |
| Msp20I | TGGCCA | 1 cut(s) | 437 |
| MspA1I | CMGCKG | 3 cut(s) | 272, 553, 644 |
| MspI | CCGG | 3 cut(s) | 48, 803, 872 |
| MspR9I | CCNGG | 4 cut(s) | 49, 362, 458, 611 |
| MunI | CAATTG | 1 cut(s) | 444 |
| MvaI | CCWGG | 3 cut(s) | 362, 458, 611 |
| NaeI | GCCGGC | 1 cut(s) | 804 |
| NciI | CCSGG | 1 cut(s) | 49 |
| NdeII | GATC | 4 cut(s) | 4, 15, 511, 543 |
| NgoMIV | GCCGGC | 1 cut(s) | 802 |
| NlaIII | CATG | 4 cut(s) | 40, 323, 476, 772 |
| NlaIV | GGNNCC | 5 cut(s) | 111, 265, 455, 709, 819 |
| NmeAIII | GCCGAG | 1 cut(s) | 601 |
| NmuCI | GTSAC | 3 cut(s) | 245, 329, 562 |
| NotI | GCGGCCGC | 1 cut(s) | 636 |
| NspI | RCATGY | 1 cut(s) | 40 |
| PaeR7I | CTCGAG | 1 cut(s) | 987 |
| PceI | AGGCCT | 1 cut(s) | 287 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 162 |
| PdiI | GCCGGC | 1 cut(s) | 804 |
| PfeI | GAWTC | 1 cut(s) | 77 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 753 |
| PleI | GAGTC | 2 cut(s) | 565, 964 |
| PpsI | GAGTC | 2 cut(s) | 565, 964 |
| PpuMI | RGGWCCY | 1 cut(s) | 454 |
| Psp124BI | GAGCTC | 1 cut(s) | 319 |
| Psp5II | RGGWCCY | 1 cut(s) | 454 |
| Psp6I | CCWGG | 3 cut(s) | 360, 456, 609 |
| PspFI | CCCAGC | 2 cut(s) | 255, 349 |
| PspGI | CCWGG | 3 cut(s) | 360, 456, 609 |
| PspN4I | GGNNCC | 5 cut(s) | 111, 265, 455, 709, 819 |
| PspPI | GGNCC | 2 cut(s) | 454, 817 |
| PspPPI | RGGWCCY | 1 cut(s) | 454 |
| PspXI | VCTCGAGB | 1 cut(s) | 987 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 142, 174 |
| PsuI | RGATCY | 1 cut(s) | 543 |
| RsaI | GTAC | 2 cut(s) | 41, 780 |
| RsaNI | GTAC | 2 cut(s) | 40, 779 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1032 |
| SacI | GAGCTC | 1 cut(s) | 319 |
| SaqAI | TTAA | 1 cut(s) | 582 |
| Sau3AI | GATC | 4 cut(s) | 4, 15, 511, 543 |
| Sau96I | GGNCC | 2 cut(s) | 454, 817 |
| SchI | GAGTC | 2 cut(s) | 566, 964 |
| ScrFI | CCNGG | 4 cut(s) | 49, 362, 458, 611 |
| SduI | GDGCHC | 1 cut(s) | 319 |
| SfaNI | GCATC | 5 cut(s) | 53, 400, 409, 717, 784 |
| SfcI | CTRYAG | 1 cut(s) | 963 |
| Sfr274I | CTCGAG | 1 cut(s) | 987 |
| SgrAI | CRCCGGYG | 1 cut(s) | 802 |
| SinI | GGWCC | 2 cut(s) | 454, 817 |
| SlaI | CTCGAG | 1 cut(s) | 987 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1032 |
| SmlI | CTYRAG | 1 cut(s) | 987 |
| SmoI | CTYRAG | 1 cut(s) | 987 |
| SpeI | ACTAGT | 1 cut(s) | 182 |
| Sse9I | AATT | 3 cut(s) | 22, 444, 929 |
| SseBI | AGGCCT | 1 cut(s) | 287 |
| SspMI | CTAG | 2 cut(s) | 183, 192 |
| SstI | GAGCTC | 1 cut(s) | 319 |
| StuI | AGGCCT | 1 cut(s) | 287 |
| StyD4I | CCNGG | 4 cut(s) | 47, 360, 456, 609 |
| StyI | CCWWGG | 3 cut(s) | 105, 396, 525 |
| TaaI | ACNGT | 6 cut(s) | 70, 158, 227, 245, 407, 836 |
| TaiI | ACGT | 2 cut(s) | 381, 723 |
| TaqI | TCGA | 2 cut(s) | 18, 988 |
| TasI | AATT | 3 cut(s) | 22, 444, 929 |
| TfiI | GAWTC | 1 cut(s) | 77 |
| Tru1I | TTAA | 1 cut(s) | 582 |
| Tru9I | TTAA | 1 cut(s) | 582 |
| TscAI | CASTG | 4 cut(s) | 93, 213, 241, 868 |
| TseFI | GTSAC | 3 cut(s) | 245, 329, 562 |
| TseI | GCWGC | 3 cut(s) | 413, 505, 632 |
| Tsp45I | GTSAC | 3 cut(s) | 245, 329, 562 |
| TspGWI | ACGGA | 1 cut(s) | 359 |
| TspRI | CASTG | 4 cut(s) | 93, 213, 241, 868 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 753 |
| VpaK11BI | GGWCC | 2 cut(s) | 454, 817 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 395 |
| XapI | RAATTY | 1 cut(s) | 929 |
| XceI | RCATGY | 1 cut(s) | 40 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 112, 143, 213, 257 |
| XhoI | CTCGAG | 1 cut(s) | 987 |
| XspI | CTAG | 2 cut(s) | 183, 192 |